Add cached cd hit est reference collapse step to pathoscope#188

ReeceHoffmann wants to merge 6 commits into

virtool:mainvirtool/workflow-pathoscope:mainfrom

ReeceHoffmann:reecehoffmann/vir-2534-add-cached-cd-hit-est-reference-collapse-step-to-pathoscopeReeceHoffmann/workflow-pathoscope:reecehoffmann/vir-2534-add-cached-cd-hit-est-reference-collapse-step-to-pathoscopeCopy head branch name to clipboard