IQ-TREE software version 2: phylogenetics by maximum likelihood
Single-cell analysis in Python. Scales to >100M cells.
Foundation Models for Genomics & Transcriptomics
A comprehensive library for computational molecular biology
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
bedtools - the swiss army knife for genome arithmetic
Oxford Nanopore's Basecaller
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
Official git repository for Biopython (originally converted from CVS)
The second version of the Kraken taxonomic sequence classification system
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