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10 public repositories
matching this topic...
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
Updated
Jul 10, 2026
Nextflow
Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF
Updated
Jun 12, 2026
Jupyter Notebook
Modern Bio-Formats wrapper with clean lazy Python API
Updated
Jun 25, 2026
Python
A tiny utility module to parse Zeiss CZI files in Python through python-bioformats.
Updated
Dec 9, 2021
Python
Python GUI microscopy file converter for ICS2, IMS, LIF, ND2, ZVI, TIFF, OME-TIFF and OME-Zarr bioimaging datasets.
Updated
Jul 3, 2026
Python
A BioFormats wrapper for Cytomine PIMS
Updated
May 23, 2023
Groovy
Take Olympus vsi stacks. Bleach-correct, write out ome-tiff. Save clicks.
Updated
Jun 24, 2024
Python
(deprecated) meta-package to import bioformats_jar from scyjava
Updated
May 27, 2022
Python
Updated
Jun 27, 2022
Python
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