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sagizty/README.md

Hi there 👋

  • 📫 email me at: zhangtianyi@u.nus.edu

  • 🔭 I’m currently working on Computational Pathology, at/with:

CVPD group at Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore

PuzzleLogic & IMVR at National University of Singapore (NUS), Singapore

Anurag's GitHub stats

Reviewer: IEEE T-PAMI, IEEE TNNLS, IEEE JBHI, IEEE TBME, CMPB, CVPR, AAAI, MICCAI

Recent Works:

Tianyi Zhang*, Sicheng Chen*, Dankai Liao, Dandan Li, Low Chang Han, Yanqin Jiang, Yueming Jin, Shangqing Lyu, "PathRWKV: Enabling Whole Slide Prediction with Recurrent-Transformer" IEEE Transactions on Medical Imaging, accepted, 2026.

Chi Phan*, Tianyi Zhang*, Qiaochu Xue, Yufeng Wu, Dan Hu, Zeyu Liu, Sudong Wang, and Yueming Jin, "Enhancing Pathological VLMs with Cross-scale Reasoning" In International Conference on Medical Image Computing and Computer-Assisted Intervention. MICCAI 2026. accepted.

Bochong Zhang*, Tianyi Zhang*, Qiaochu Xue, Zeyu Liu, Dankai Liao, Timothy Antoni, YEO HUI TING GRACE, Sicheng Chen, Hwee Kuan LEE, Shangqing Lyu, and Yueming Jin, "DiffBulk: Enhancing Spatial Transcriptomic Prediction with Diffusion-Based Training" IEEE Transactions on Medical Imaging, accepted, 2026.

Zeyu Liu*, Tianyi Zhang*, Yufang He, Bo Wen, Haoran Guo, Peng Zhang, Chenbin Ma, Shangqing Lyu, Yunlu Feng, Yu Zhao, Yueming Jin, Dachun Zhao, Guanglei Zhang, "Cellflow: Advancing pathological image augmentation from spatial views to temporal trajectories" Medical Image Analysis, vol 110, 103995.

Enhui Chai, Sicheng Chen, Tianyi Zhang, Xingyu Li and Tianxiang Cui, "SSMamba: A Self-Supervised Hybrid State Space Model for Pathological Image Classification" Medical Image Analysis, vol 111, 104080.

Zeyu Liu, Yufang He, Tianyi Zhang, Chenbin Ma, Fan Song, Huijie Wu, Ruxin Cai, Haoran Guo, Haonan Zhang, Bo Wen, Peng Zhang, Dachun Zhao and Guanglei Zhang, "StainExpert: A Unified Multi-Expert Diffusion Framework for Multi-Target Pathological Stain Translation", IEEE Transactions on Medical Imaging, accepted, 2026.

Highlighted Previous Works:

Tianyi Zhang, Zhiling Yan, Chunhui li, Nan Ying, Yanli Lei, Shangqing Lyu, Yunlu Feng, Yu Zhao, Guanglei Zhang, “CellMix: A general instance relationship based method for data augmentation towards pathology image analysis,” IEEE Transactions on Neural Networks and Learning Systems, 2025, 36(9), pp.16020 - 16034.

Zeyu Liu*, Tianyi Zhang*, Yufang He, Yunlu Feng, Yu Zhao, and Guanglei Zhang, “Generating Progressive Images from Pathological Transitions via Diffusion Model,” In International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), pp. 308-318, 2024.

Yufang He, Zeyu Liu, Mingxin Qi, Shengwei Ding, Peng Zhang, Fan Song, Chenbin Ma, Huijie Wu, Ruxin Cai, Youdan Feng, Haonan Zhang, Tianyi Zhang, Guanglei Zhang, “PST-Diff: Achieving High-consistency Stain Transfer by Diffusion Models with Pathological and Structural Constraints,” IEEE Transactions on Medical Imaging, 2024, 43(10), pp.3634-3647.

Tianyi Zhang, Shangqing Lyu, Yanli Lei, Sicheng Chen, Nan Ying, Yufang He, Yu Zhao, Yunlu Feng, Guanglei Zhang, “PuzzleTuning: explicit bridge pathological and natural image with puzzles,” arXiv: 2311.06712, 2023.

Tianyi Zhang, Youdan Feng, Yu Zhao, Yunlu Feng, Yanli Lei, Nan Ying, Fan Song, Zhiling Yan, Yufang He, Aiming Yang, and Guanglei Zhang, “SI-ViT: Shuffle instance-based Vision Transformer for pancreatic cancer ROSE image classification” Computer Methods and Programs in Biomedicine, 244, p. 107969.

Tianyi Zhang, Yunlu Feng, Yu Zhao, Guangda Fan, Aiming Yang, Shangqing Lyu, Peng Zhang, Fan Song, Chenbin Ma, Yangyang Sun, Youdan Feng, and Guanglei Zhang, “MSHT: Multi-stage hybrid transformer for the ROSE image analysis of pancreatic cancer,” IEEE Journal of Biomedical and Health Informatics, 2023, 27(4), pp.1946 - 1957.

Pinned Loading

  1. PuzzleTuning PuzzleTuning Public

    The official repo of PuzzleTuning: Explicitly Bridge Pathological and Natural Image with Puzzles (arXiv: 2311.06712)

    Jupyter Notebook 17 3

  2. Multi-Stage-Hybrid-Transformer Multi-Stage-Hybrid-Transformer Public

    Official release of MSHT: Multi-stage Hybrid Transformer for the ROSE Image Analysis of Pancreatic Cancer IEEE JBHI https://ieeexplore.ieee.org/document/10006398

    Jupyter Notebook 78 7

  3. CellMix CellMix Public

    Official release of CellMix: A general instance relationship based method for data augmentation towards pathology image analysis IEEE TNNLS (arXiv:2301.11513)

    Jupyter Notebook 20

  4. MIL-SI MIL-SI Public

    Official release of Shuffle Instances-based Vision Transformer for Pancreatic Cancer ROSE Image Classification CMPB

    Jupyter Notebook 27 3

  5. VPT VPT Public

    Unofficial code for VPT(Visual Prompt Tuning) paper of arxiv 2203.12119

    Python 164 10

  6. Insight Insight Public

    learning materials for PyTorch beginners

    Jupyter Notebook 173 22