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Rat Genome Database

7 followers
rgd.web@mcw.edu

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rgd-core-library rgd-core-library Public

Domain layer and shared components

Java
rgd-web-application rgd-web-application Public

Code used by the RGD web site and tools

JavaScript 2
rgd-web-services rgd-web-services Public

Swagger implementation

Java
rgd-annotation-files rgd-annotation-files Public

GO annotation files in GAF, GPAD and GPI format

Repositories

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Showing 10 of 154 repositories

ortholog-pipeline Public
Load orthologs.

rat-genome-database/ortholog-pipeline’s past year of commit activity

Java 1 GPL-3.0 1 0 0 Updated May 29, 2026
rgd-web-application Public
Code used by the RGD web site and tools

rat-genome-database/rgd-web-application’s past year of commit activity

JavaScript 2 GPL-3.0 0 0 2 Updated May 29, 2026
clinvar-pipeline Public
Loads variants from ClinVar into RGD database. Creates disease annotations to variants and also for genes, based on orthology.

rat-genome-database/clinvar-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 28, 2026
mouse-qtl-pipeline Public
Load qtls for mouse, files from MGI FTP site.

rat-genome-database/mouse-qtl-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 28, 2026
interaction-counts-pipeline Public
Computes "interactions count" for genes and proteins and and stores it in INTERACTION_COUNTS table.

rat-genome-database/interaction-counts-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 28, 2026
phenotype-annotation-pipeline Public
Phenotype annotation pipeline, for mouse and human genes.

rat-genome-database/phenotype-annotation-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 28, 2026
full-record-index-pipeline Public
Precomputes summaries from experiment record data into FULL_RECORD_INDEX table for subsequent use by phenominer tool.

rat-genome-database/full-record-index-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 28, 2026
gene-loading-pipeline Public
Loads gene models from NCBI

rat-genome-database/gene-loading-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 27, 2026
ontology-load-pipeline Public
Load all ontologies used by RGD.

rat-genome-database/ontology-load-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 26, 2026
rgd-annotation-files Public
GO annotation files in GAF, GPAD and GPI format

rat-genome-database/rgd-annotation-files’s past year of commit activity

0 GPL-3.0 0 1 0 Updated May 23, 2026

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