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openproblems-bio / task_spatial_simulators Public

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Minor updates to description and implementation#15

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rcannood merged 7 commits into

mainopenproblems-bio/task_spatial_simulators:mainfrom

update-metadataopenproblems-bio/task_spatial_simulators:update-metadataCopy head branch name to clipboard

May 26, 2026

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Minor updates to description and implementation#15
rcannood merged 7 commits into
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migrate to anndataR

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Test on: pull_request 19

build / List components to test

build / Test (negative_shuffle, control_methods, src/control_methods/negative_shuffle/config.vsh.yaml, sr...

build / Test (positive, control_methods, src/control_methods/positive/config.vsh.yaml, src/control_method...

build / Test (negative_normal, control_methods, src/control_methods/negative_normal/config.vsh.yaml, src/...

build / Test (convert, process_datasets, src/process_datasets/convert/config.vsh.yaml, src/process_datase...

build / Test (sc_features, process_datasets, src/process_datasets/sc_features/config.vsh.yaml, src/proces...

build / Test (generate_sim_spatialcluster, process_datasets, src/process_datasets/generate_sim_spatialclu...

build / Test (precompute_downstream, process_datasets, src/process_datasets/precompute_downstream/config....

build / Test (scdesign2, methods, src/methods/scdesign2/config.vsh.yaml, src/methods/scdesign2/, r_script...

build / Test (zinbwave, methods, src/methods/zinbwave/config.vsh.yaml, src/methods/zinbwave/, r_script, m...

build / Test (splatter, methods, src/methods/splatter/config.vsh.yaml, src/methods/splatter/, r_script, m...

build / Test (scdesign3_nb, methods, src/methods/scdesign3_nb/config.vsh.yaml, src/methods/scdesign3_nb/,...

build / Test (sparsim, methods, src/methods/sparsim/config.vsh.yaml, src/methods/sparsim/, r_script, meth...

build / Test (symsim, methods, src/methods/symsim/config.vsh.yaml, src/methods/symsim/, r_script, methods...

build / Test (scdesign3_poisson, methods, src/methods/scdesign3_poisson/config.vsh.yaml, src/methods/scde...

build / Test (srtsim, methods, src/methods/srtsim/config.vsh.yaml, src/methods/srtsim/, r_script, methods...

build / Test (downstream, metrics, src/metrics/downstream/config.vsh.yaml, src/metrics/downstream/, r_scr...

build / Test (ks_statistic_sc_features, metrics, src/metrics/ks_statistic_sc_features/config.vsh.yaml, sr...

build / Test (ks_statistic_gene_cell, metrics, src/metrics/ks_statistic_gene_cell/config.vsh.yaml, src/me...

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