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Fix/migrate zarr v2 to v3 #140

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Merged
dariarom94 merged 8 commits into from
Jun 18, 2026
Merged

Fix/migrate zarr v2 to v3 #140

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9433580
add v2-3 conv
dariarom94 Jun 17, 2026
a74afca
fix deleting a tmp too early
dariarom94 Jun 18, 2026
9e22bf3
Merge branch 'main' into fix/migrate-zarr-v2-to-v3
dariarom94 Jun 18, 2026
cd4e481
adjust memory
dariarom94 Jun 18, 2026
01be8d8
memory change
dariarom94 Jun 18, 2026
d9b7ba7
nebius config adjust
dariarom94 Jun 18, 2026
4ff04ab
Merge branch 'main' into fix/migrate-zarr-v2-to-v3
dariarom94 Jun 18, 2026
7eb2158
fix SPLIT setup
dariarom94 Jun 18, 2026
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7 changes: 4 additions & 3 deletions src/methods_expression_correction/split/config.vsh.yaml
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Expand Up @@ -28,7 +28,7 @@ engines:
setup:
- type: docker
run: |
apt-get update
apt-get update && apt-get install -y libcurl4-openssl-dev libssl-dev libgit2-dev libxml2-dev
# - type: r
# packages: [fs, rlang, lifecycle]
- type: r
Expand All @@ -41,8 +41,9 @@ engines:
# The reinstall of SingleCellExperiment triggers the correct re-install of SpatialExperiment.
- type: r
github: dmcable/spacexr
- type: r
github: bdsc-tds/SPLIT
- type: docker
run: |
Rscript -e 'remotes::install_github("bdsc-tds/SPLIT")'

- type: native

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