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Fix/migrate zarr v2 to v3 #136

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Merged
dariarom94 merged 3 commits into from
Jun 18, 2026
+4 −0
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Fix/migrate zarr v2 to v3 #136

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9433580
add v2-3 conv
dariarom94 Jun 17, 2026
a74afca
fix deleting a tmp too early
dariarom94 Jun 18, 2026
9e22bf3
Merge branch 'main' into fix/migrate-zarr-v2-to-v3
dariarom94 Jun 18, 2026
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4 changes: 4 additions & 0 deletions src/data_processors/process_dataset/script.py
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Expand Up @@ -264,3 +264,7 @@ def subsample_adata_group_balanced(adata, group_key, n_samples, seed=0):

# Save the spatial data
sdata_output.write(par["output_sp"], overwrite=True)

# Clean up zarr v2 migration temp dir only after all writes are complete
if _tmp_dir is not None:
shutil.rmtree(_tmp_dir)
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