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mittelmark/README.md

Mittelmark Repository Index

Editors

R packages

  • enrigo - R package for the Enrichment analysis for Gene Ontology and other terms
  • hanna - R simulation package for social network paper Hermanussen et al. 2023
  • pbi - package for the course Practical Bioinformatics at the University of Potsdam
  • sbi - package for the courses Statistical Bioinformatics and Machine Learning in Bioinformatics at the University of Potsdam
  • snha - Implementation of St. Nicolas House Analysis in R to create correlation networks for interacting variables, see Groth et al. 2019 and Hermanussen et al. 2021
  • tmdoc4r - package for reproducibe research, embed R, Python, Octave, GraphViz etc code in your Markdown documents, used in the courses Statistical Bioinformatics, Practical Bioinformatics and Machine Learning in Bioinformatics at the University of Potsdam
  • trachy - package for analysis of Trachypithecus species microbiome data for the paper "Molecular genetic characterization of the diet of limestone and rainforest langurs" by Truong et al. (in preparation)

Tcl applications and packages

  • chess4tcl - Tcl pakcage to work with PGN files using the chess.js javascript library
  • citer - Tcl package to work with BibTeX files
  • hyperhelp - Hypertext help widget which can be used to display Markdown like help files
  • kroki4tcl - package and CLI and GUI application to create diagrams using the kroki.io webservice
  • mndoc - Markdown to HTML converter package and application, can as well extract Markdown API documentation from source code
  • oowidgets - Tcl package to create megawidgets using TclOO
  • ptlex - Tcl lexer generator to create lexers for Tcl, Perl, Python, Ruby, R ...
  • tblocks - Tcl package and application to create flow chart like diagrams from Markdown code
  • tclmain - package runner using the approach of python3 -m modulename
  • tcrd - Chord diagram and Chord sheet generator
  • thtmlview - hypertext widget to display simple HTML files within your application - not a web browser!
  • tmdoc - Tcl package and application for embedding programming languages like R, Python, Octave etc or diagram languages like GraphViz, PlantUML etc into Markdown document
  • tpack - create single file Tcl scripts from a set of Tcl code files
  • tsvg - Tcl package to write SVG files in an Tcl-way
  • tdot - Tcl package to write GraphViz dot files more easily

Pinned Loading

  1. microemacs microemacs Public

    Modern Jasspa's Microemacs fork - based on Dave Conroy and Daniel Lawrences code. Text editor with GUI and terminal mode, with syntax highlighting, folding, outlines, abbreviations, own extension l…

    C 62 4

  2. snha snha Public

    St. Nicolas House Algorithm implementation in R - predicting correlation networks using association chains

    R 6

  3. hanna hanna Public

    R code for the paper - Hermanussen et.al. Winner-loser effects improve social network efficiency between competitors with equal resource holding power. Sci Rep 13, 14439 (2023).

    R 3 1

  4. dbpp dbpp Public

    Repository for the course Databases and Practical Programming at the University of Potsdam

    Python 7

  5. pandoc-filters pandoc-filters Public

    Various filters in Lua and Tcl for the Pandoc document processor

    Lua 5

  6. tmdoc tmdoc Public

    Literate programming with Tcl code and command line tools by embedding into Markdown or LaTeX documents with code evaluation.

    Tcl 6