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Expose the functionality to suppress the creation of non-executable CWL and snakemake files. - #104

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eladrion wants to merge 4 commits into
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expose_nonexecutable_workflow_filtering
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Expose the functionality to suppress the creation of non-executable CWL and snakemake files.#104
eladrion wants to merge 4 commits into
mainfrom
expose_nonexecutable_workflow_filtering

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@eladrion

@eladrion eladrion commented Jul 29, 2026

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Pull Request Overview

This PR uses the functionality from the APE backend to exclude "partial" scripts creation. If provided by the frontend,
the option create_partial_scripts is used by RestAPE and generation of CWL and Snakemake files for which the tool annotations are lacking the instructions/code to execute is skipped, if create_partial_scripts is set to false.

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How Has This Been Tested?

Checklist

  • I have referenced a related issue.
  • I have followed the project’s style guidelines.
  • My changes include tests, if applicable.
  • All tests pass locally.
  • I have added myself to the CITATION.cff file, if not already present.

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