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Pull requests: MouseLand/cellpose

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Pull requests list

Fix: Exit early from update_orthos() when orthos are off
#1458 opened May 22, 2026 by mrariden Collaborator • Draft
1 of 2 tasks
Feature: Add large slider popup
#1457 opened May 21, 2026 by mrariden Collaborator Loading…
8 tasks done
1
add weights and biases to cellpose training
#1456 opened May 21, 2026 by jefromson Loading…
adding dino models and gpu-accelerated augmentations
#1454 opened May 17, 2026 by carsen-stringer Member Loading…
Fix IndexError when loading image with auto-adjust saturation unchecked
#1453 opened May 14, 2026 by chenyenchung Loading…
4
Add SLURM cluster support (cellpose 3.x backport)
#1444 opened May 5, 2026 by karimi-ali Loading…
Add SLURM cluster support to distributed_segmentation
#1443 opened May 5, 2026 by karimi-ali Loading…
Views box color choose
#1439 opened Apr 28, 2026 by mrariden Collaborator • Draft
make merging cells faster
#1433 opened Apr 12, 2026 by Turu-Tamas Loading…
feat: Add Flash-Attention Support
#1429 opened Apr 6, 2026 by bobqianic Loading…
Add MLX backend support and optimize inference for Apple Silicon
#1426 opened Apr 1, 2026 by hkmoon Loading…
7
fix: autoload _cp_masks and escape glob metacharacters in paths
#1421 opened Mar 29, 2026 by skpalan Loading…
3 tasks
Speed up multi-ROI deletion in the GUI
#1420 opened Mar 24, 2026 by chenyenchung Loading…
3
3D GUI: compute ortho cell outlines separately
#1418 opened Mar 20, 2026 by mrariden Collaborator Loading…
2 tasks
1
optimise dev env: use pre-built binaries and align with setup.py
#1410 opened Feb 24, 2026 by qin-yu Contributor Loading…
2
feat(plot): add share_axes to show_segmentation for synced viewing
#1405 opened Feb 11, 2026 by shcrela Loading…
2
support channel_axis in _get_batch
#1399 opened Jan 26, 2026 by piever Loading…
Refactored the distributed_eval from the contrib package
#1382 opened Dec 13, 2025 by cgoina Loading…
1
feat: fix training when load_files=False
#1381 opened Dec 11, 2025 by spkgyk Loading…
feat: Enable custom loss callbacks for integration with wandb/mlflow/tensorboard with early stopping
#1380 opened Dec 10, 2025 by yuguerten Loading…
Fix to issue #1375 to make it also zarr v3 compatible
#1379 opened Dec 9, 2025 by felixS27 Loading…
2
Faster TensorRT Runtime for CellposeSAM
#1356 opened Oct 24, 2025 by chaichontat Contributor Loading…
1
Fix: io.omread_3D used when channel_axis > 0
#1344 opened Oct 9, 2025 by dimitri-fabreges Loading…
Proof-of-concept: Cellpose distributed on Slurm cluster with AMD GPUs
#1334 opened Sep 29, 2025 by erjel Contributor Loading…
1
2
Update gui.py for
#1295 opened Aug 5, 2025 by derekthirstrup Loading…
2
ProTip! Adding no:label will show everything without a label.