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Ccsmodel #136

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1d877cb
Change epitope sequence to match new triskelion models
jdmartinez24 Jun 16, 2026
09f91e3
Update URL for version 2 of CCS models
jdmartinez24 Jun 16, 2026
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6 changes: 3 additions & 3 deletions examples/article_figures/fig4_ccs.py
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Original file line number Diff line number Diff line change
Expand Up @@ -129,8 +129,8 @@ def download_cif_file(

##########################
random_seed = 24
dome_url = "https://zenodo.org/records/20377070/files/Dome_model.cif"
flat_url = "https://zenodo.org/records/20377070/files/Flat_lattice_model.cif"
dome_url = "https://zenodo.org/records/20719843/files/Dome_model_v2.0.cif"
flat_url = "https://zenodo.org/records/20719843/files/Flat_lattice_model_v2.0.cif"

# Download the CIF files
dome_model = download_cif_file(dome_url)
Expand All @@ -139,7 +139,7 @@ def download_cif_file(
probe_template = "Antibody",
probe_name="custom",
probe_target_type = "Sequence",
probe_target_value = "NNRIA",
probe_target_value = "ATETQ",
probe_distante_to_epitope = 0,
probe_DoL=4,
)
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