Compatibility layer for EESSI version 2026.06 by bedroge · Pull Request #235 · EESSI/compatibility-layer

bedroge · 2026-05-08T14:39:52Z

Still WIP, but testing some new functionality already...

bedroge · 2026-05-11T09:19:24Z

bot: build repo:eessi.io-2025.06-compat arch:x86_64/generic

bedroge · 2026-05-11T19:48:51Z

bot: build repo:eessi.io-2025.06-compat instance:eessi-bot-mc-aws for:arch=x86_64/generic

eessi-bot-aws · 2026-05-11T19:48:59Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-compat
Building on: generic
Building for: x86_64/generic
Job dir: /project/def-users/SHARED/jobs/2026.05/pr_235/156325

date	job status	comment
May 11 19:48:57 UTC 2026	submitted	job id `156325` awaits release by job manager
May 11 19:49:15 UTC 2026	released	job awaits launch by Slurm scheduler
May 11 19:55:17 UTC 2026	running	job `156325` is running
May 11 19:57:20 UTC 2026	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-156325.out` ❌ some task failed ❌ no tarball found Artefacts Details
May 11 19:57:20 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason Failed for unknown reason Details ✅ job output file `slurm-156325.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

bedroge · 2026-05-11T21:20:12Z

bot: build repo:eessi.io-2025.06-compat instance:eessi-bot-mc-aws for:arch=x86_64/generic

eessi-bot-aws · 2026-05-11T21:20:21Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-compat
Building on: generic
Building for: x86_64/generic
Job dir: /project/def-users/SHARED/jobs/2026.05/pr_235/156326

date	job status	comment
May 11 21:20:19 UTC 2026	submitted	job id `156326` awaits release by job manager
May 11 21:20:30 UTC 2026	released	job awaits launch by Slurm scheduler
May 11 21:25:33 UTC 2026	running	job `156326` is running
May 12 00:33:38 UTC 2026	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-156326.out` ❌ some task failed ✅ found tarball Artefacts `eessi-2026.06-compat-linux-x86_64-1778545846.tar.gz` size: 1316 MiB (1380624192 bytes) entries: 183549
May 12 00:33:38 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason Failed for unknown reason Details ✅ job output file `slurm-156326.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

bedroge · 2026-05-12T07:28:25Z

bot: build repo:eessi.io-2025.06-compat instance:eessi-bot-mc-aws for:arch=x86_64/generic

eessi-bot-aws · 2026-05-12T07:28:33Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-compat
Building on: generic
Building for: x86_64/generic
Job dir: /project/def-users/SHARED/jobs/2026.05/pr_235/156327

date	job status	comment
May 12 07:28:32 UTC 2026	submitted	job id `156327` awaits release by job manager
May 12 07:29:10 UTC 2026	released	job awaits launch by Slurm scheduler
May 12 07:35:13 UTC 2026	running	job `156327` is running
May 12 07:56:42 UTC 2026	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-156327.out` ❌ some task failed ✅ found tarball Artefacts `eessi-2026.06-compat-linux-x86_64-1778572503.tar.gz` size: 389 MiB (408295890 bytes) entries: 173293
May 12 07:56:42 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-156327.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

bedroge · 2026-05-12T08:17:45Z

bot: build repo:eessi.io-2025.06-compat instance:eessi-bot-mc-aws for:arch=x86_64/generic

eessi-bot-aws · 2026-05-12T08:17:54Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-compat
Building on: generic
Building for: x86_64/generic
Job dir: /project/def-users/SHARED/jobs/2026.05/pr_235/156328

date	job status	comment
May 12 08:17:53 UTC 2026	submitted	job id `156328` awaits release by job manager
May 12 08:18:48 UTC 2026	released	job awaits launch by Slurm scheduler
May 12 08:19:51 UTC 2026	running	job `156328` is running
May 12 14:40:14 UTC 2026	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-156328.out` ❌ some task failed ✅ found tarball Artefacts `eessi-2026.06-compat-linux-x86_64-1778596658.tar.gz` size: 1327 MiB (1391465593 bytes) entries: 179430
May 12 14:40:14 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason Failed for unknown reason Details ✅ job output file `slurm-156328.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

bedroge · 2026-05-12T15:00:29Z

bot: build repo:eessi.io-2025.06-compat instance:eessi-bot-mc-aws for:arch=x86_64/generic

eessi-bot-aws · 2026-05-12T15:00:41Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-compat
Building on: generic
Building for: x86_64/generic
Job dir: /project/def-users/SHARED/jobs/2026.05/pr_235/156329

date	job status	comment
May 12 15:00:39 UTC 2026	submitted	job id `156329` awaits release by job manager
May 12 15:01:20 UTC 2026	released	job awaits launch by Slurm scheduler
May 12 15:02:23 UTC 2026	running	job `156329` is running
May 12 19:02:42 UTC 2026	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-156329.out` ❌ some task failed ✅ found tarball Artefacts `eessi-2026.06-compat-linux-x86_64-1778612402.tar.gz` size: 1442 MiB (1512120372 bytes) entries: 196326
May 12 19:02:42 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-156329.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot-aws · 2026-06-30T15:54:41Z

This is the status of all the bot: build commands:

on	for	repo	result	date	status	url
`generic`	`aarch64/generic`	eessi.io-2025.06-compat	😁 SUCCESS	Jun 19 01:49:05 UTC 2026	finished	#235 (comment)
`generic`	`riscv64/generic`	eessi.io-2025.06-compat	😁 SUCCESS	Jun 20 16:33:24 UTC 2026	finished	#235 (comment)
`generic`	`x86_64/generic`	eessi.io-2025.06-compat	😁 SUCCESS	Jun 19 01:22:10 UTC 2026	finished	#235 (comment)

casparvl · 2026-06-30T15:58:29Z

I really don't understand what I'm seeing in the staging PR...

Deployment contents
eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst 🔐
eessi-2025.06-software-linux-riscv64-generic-layer-1780038350.tar.zst 🔐
eessi-2026.06-compat-linux-riscv64-1781972080.tar.gz 🔐

I mean, I see only one uploaded tarball in this PR. #235 (comment) and #235 (comment) don't seem to have been uploaded for some reason.

Yet in the staging PR I see three tarballs, with names ranging from eessi-2023.06 to eessi-2026.06.

What I also don't understand is that our build command is:

bot: build repo:eessi.io-2025.06-compat instance:eessi-bot-riscv for:arch=riscv64/generic

I.e. the target repo is eessi.io-2025.06-compat? Why 2025.06? How does that result in a tarball with 2026.06 in the name? I'm utterly confused...

casparvl · 2026-06-30T16:11:52Z

It seems the AWS cluster uploaded that strange 2023.06 tarball:

upload: ../../project/def-users/SHARED/jobs/2026.05/pr_235/160217/eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst to s3://software.eessi.io-2023.06/2023.06/software/linux/x86_64/amd/zen2/17796967460.tar.zst/eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst
Creating metadata file
create_metadata_file file=/project/def-users/SHARED/jobs/2026.05/pr_235/160217/eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst                                    url=https://software.eessi.io-2023.06.s3.amazonaws.com/2023.06/software/linux/x86_64/amd/zen2/17796967460.tar.zst/eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst                                    github_repository=E
ESSI/compatibility-layer                                    pull_request_number=235                                    pr_comment_id=4532626274
metadata:
{
  "uploader": {
    "username": "bot",
    "ip": "3.123.10.249",
    "hostname": "login1.int.aws-rocky88-202310.eessi.io"
  },
  "payload": {
    "filename": "eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst",
    "size": "25394",
    "ctime": "Mon May 25 08:12:27 UTC 2026",
    "sha256sum": "b99b862cf7d9a0b6893431935ac24c38735f09c364f72cc7f3f121bc5dfcd98d",
    "url": "https://software.eessi.io-2023.06.s3.amazonaws.com/2023.06/software/linux/x86_64/amd/zen2/17796967460.tar.zst/eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst"
  },
  "link2pr": {
    "repo": "EESSI/compatibility-layer",
    "pr": "235",
    "pr_comment_id": "4532626274"
  }
}

And at the end of it, it seems to have crashed (when uploading the metadata file?):

upload: ../../tmp/tmp.NYRpnWVZIe to s3://software.eessi.io-2023.06/2023.06/software/linux/x86_64/amd/zen2/17796967460.tar.zst/eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst.meta.txt
'
           stderr 'INFO:    Environment variable SINGULARITY_TMPDIR is set, but APPTAINER_TMPDIR is preferred
INFO:    Environment variable SINGULARITY_CACHEDIR is set, but APPTAINER_CACHEDIR is preferred
INFO:    Using cached SIF image
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
        LANGUAGE = (unset),
        LC_ALL = (unset),
        LANG = "en_US.UTF-8"
    are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
        LANGUAGE = (unset),
        LC_ALL = (unset),
        LANG = "en_US.UTF-8"
    are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
Signing file /project/def-users/SHARED/jobs/2026.05/pr_235/160217/eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst
Write signature to /project/def-users/SHARED/jobs/2026.05/pr_235/160217/eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst.sig
Signing file /tmp/tmp.NYRpnWVZIe
Write signature to /tmp/tmp.NYRpnWVZIe.sig
'
           exit code 0
[20260630-T15:14:51] WARNING: A crash occurred!
Traceback (most recent call last):
  File "/home/bot/.local/lib/python3.6/site-packages/pyghee/lib.py", line 170, in process_event
    self.handle_event(event_info, log_file=log_file)
  File "/home/bot/.local/lib/python3.6/site-packages/pyghee/lib.py", line 102, in handle_event
    handler(event_info, log_file=log_file)
  File "/home/bot/eessi-bot-software-layer/eessi_bot_event_handler.py", line 465, in handle_pull_request_event
    handler(event_info, pr)
  File "/home/bot/eessi-bot-software-layer/eessi_bot_event_handler.py", line 397, in handle_pull_request_labeled_event
    deploy_built_artefacts(pr, event_info)
  File "/home/bot/eessi-bot-software-layer/tasks/deploy.py", line 689, in deploy_built_artefacts
    upload_artefact(job_dir, artefact, repo_name, pr.number, pr_comment_id)
  File "/home/bot/eessi-bot-software-layer/tasks/deploy.py", line 443, in upload_artefact
    "succeeded")
  File "/home/bot/eessi-bot-software-layer/tasks/deploy.py", line 210, in update_pr_comment
    issue_comment = pr_comments.determine_issue_comment(pull_request, pr_comment_id, artefact)
  File "/home/bot/eessi-bot-software-layer/tools/pr_comments.py", line 94, in determine_issue_comment
    return pull_request.get_issue_comment(pr_comment_id)
  File "/home/bot/.local/lib/python3.6/site-packages/github/PullRequest.py", line 683, in get_issue_comment
    "GET", f"{self._parentUrl(self.issue_url)}/comments/{id}"
  File "/home/bot/.local/lib/python3.6/site-packages/github/Requester.py", line 355, in requestJsonAndCheck
    verb, url, parameters, headers, input, self.__customConnection(url)
  File "/home/bot/.local/lib/python3.6/site-packages/github/Requester.py", line 378, in __check
    raise self.__createException(status, responseHeaders, output)
github.GithubException.UnknownObjectException: 404 {"message": "Not Found", "documentation_url": "https://docs.github.com/rest/issues/comments#get-an-issue-comment", "status": "404"}

This may be why it didn't proceed to the others (?)

casparvl · 2026-06-30T16:15:51Z

Ok, let me first just try to redeploy...

casparvl · 2026-06-30T16:19:37Z

Crash seems to be consistent. I'm thinking: it may be related to the fact that the bot is trying to add to an existing PR comment that got deleted - and that might mess up the entire state. I mean:

upload: ../../tmp/tmp.Oa2jTsZCni to s3://software.eessi.io-2023.06/2023.06/software/linux/x86_64/amd/zen2/17796967460.tar.zst/eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst.meta.txt
'

I mean upload ../../tmp/tmp.<something>, that doesn't sound like a reasonable path for something to upload, right? I guess the state of the bot is just completely messed up.

casparvl · 2026-06-30T16:21:53Z

Renamed the two items it would normally upload, let's see if this prevents it from uploading these...

[bot@login1 160217]$ mv eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst.bak
[bot@login1 160217]$ mv eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst.sig eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst.sig.bak

casparvl · 2026-06-30T16:24:05Z

Even worse:

[20260630-T16:22:08] run_cmd(): Error running '/usr/bin/apptainer exec --contain --no-home --bind /project/60006/SHARED/jobs/2026.05/pr_235/event_74b7f550-5810-11f1-8479-3cc4bc861bd0/run_000/x86_64/amd/zen2
/eessi.io-2023.06-software --bind /project/def-users/SHARED/jobs/2026.05/pr_235 --bind /project/def-users/SHARED/jobs/2026.05/pr_235/160217 --bind /project/60006/SHARED/jobs/2026.05/pr_235 --bind /home/bot/eessi-bot-software-layer/scripts --bind /home/bot docker://ghcr.io/eessi/build-node:debian12 /home/bot/eessi-bot-software-layer/scripts/eessi-upload-to-staging --bucket-name software.eessi.io-2023.06 --pr-c
omment-id 4532626274 --pull-request-number 235 --repository EESSI/compatibility-layer --bot-instance eessi-bot-mc-aws --sign-key /home/bot/eessi-bot-aws.2026-05-12.private-key.pem --sign-script /home/bot/ee
ssi-bot-software-layer/scripts/sign_verify_file_ssh.sh /project/def-users/SHARED/jobs/2026.05/pr_235/160217/eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst' in 'None
           stdout ''/project/def-users/SHARED/jobs/2026.05/pr_235/160217/eessi-2023.06-software-linux-x86_64-amd-zen2-17796967460.tar.zst' is not a readable non zero-sized file.
'
           stderr 'INFO:    Environment variable SINGULARITY_TMPDIR is set, but APPTAINER_TMPDIR is preferred
INFO:    Environment variable SINGULARITY_CACHEDIR is set, but APPTAINER_CACHEDIR is preferred
INFO:    Using cached SIF image
'
           exit code 1
[20260630-T16:22:09] WARNING: A crash occurred!
Traceback (most recent call last):
  File "/home/bot/.local/lib/python3.6/site-packages/pyghee/lib.py", line 170, in process_event
    self.handle_event(event_info, log_file=log_file)
  File "/home/bot/.local/lib/python3.6/site-packages/pyghee/lib.py", line 102, in handle_event
    handler(event_info, log_file=log_file)
  File "/home/bot/eessi-bot-software-layer/eessi_bot_event_handler.py", line 465, in handle_pull_request_event
    handler(event_info, pr)
  File "/home/bot/eessi-bot-software-layer/eessi_bot_event_handler.py", line 397, in handle_pull_request_labeled_event
    deploy_built_artefacts(pr, event_info)
  File "/home/bot/eessi-bot-software-layer/tasks/deploy.py", line 689, in deploy_built_artefacts
    upload_artefact(job_dir, artefact, repo_name, pr.number, pr_comment_id)
  File "/home/bot/eessi-bot-software-layer/tasks/deploy.py", line 447, in upload_artefact
    "failed")
  File "/home/bot/eessi-bot-software-layer/tasks/deploy.py", line 210, in update_pr_comment
    issue_comment = pr_comments.determine_issue_comment(pull_request, pr_comment_id, artefact)
  File "/home/bot/eessi-bot-software-layer/tools/pr_comments.py", line 94, in determine_issue_comment
    return pull_request.get_issue_comment(pr_comment_id)
  File "/home/bot/.local/lib/python3.6/site-packages/github/PullRequest.py", line 683, in get_issue_comment
    "GET", f"{self._parentUrl(self.issue_url)}/comments/{id}"
  File "/home/bot/.local/lib/python3.6/site-packages/github/Requester.py", line 355, in requestJsonAndCheck
    verb, url, parameters, headers, input, self.__customConnection(url)
  File "/home/bot/.local/lib/python3.6/site-packages/github/Requester.py", line 378, in __check
    raise self.__createException(status, responseHeaders, output)
github.GithubException.UnknownObjectException: 404 {"message": "Not Found", "documentation_url": "https://docs.github.com/rest/issues/comments#get-an-issue-comment", "status": "404"}

I guess it doesn't actually check the directory, just reconstruct the name based on the metadata and just assume the file exists. Ok, next option: see if I can make the bot believe this was a failed build so that it will skip it...

casparvl · 2026-06-30T16:26:36Z

Oof, there's another one as well:

upload: ../../project/def-users/SHARED/jobs/2026.05/pr_235/160218/eessi-2023.06-software-linux-x86_64-amd-zen3-17796969570.tar.zst to s3://software.eessi.io-2023.06/2023.06/software/linux/x86_64/amd/zen3/17
796969570.tar.zst/eessi-2023.06-software-linux-x86_64-amd-zen3-17796969570.tar.zst

leads to the same crash. Will try the same workaround.

casparvl · 2026-06-30T16:28:42Z

Btw, the workaround I do is:

[bot@login1 160218]$ cp _bot_job160218.result _bot_job160218.result.bak

and then modify the _bot_job160218.result so that the status is FAILED:

[bot@login1 160218]$ cat _bot_job160218.result | grep status
status = FAILED

casparvl · 2026-06-30T16:31:56Z

Ugh, there are more... It sees 17 successful jobs

[20260630-T16:28:56] determine_successful_jobs(): SUCCESSFUL job in '/project/def-users/SHARED/jobs/2026.06/pr_235/168053'
[20260630-T16:28:56] determine_artefacts_to_deploy(): num successful jobs 17

a number of which seem to be eessi-2023.06 tarballs on a range of CPU architectures. I guess we need to apply the workaround to all.

casparvl · 2026-06-30T16:36:29Z

Ok, did the same for jobs 160219 to 160228... let's see how it goes now.

casparvl · 2026-06-30T16:38:16Z

Now we're getting somewhere. #235 (comment) just uploaded, the other one is on the way. I'll have to go for dinner. But I fully expect these to show up in the staging PR on the next pass by the Stratum 0.

boegel · 2026-07-01T19:37:27Z

@casparvl Since staging PR is merged, we should merge this as is?

Neves-P

The ingest worked fine with @boegel and @casparvl's help in double checking that stray tarballs were not included due to EESSI/eessi-bot-software-layer#381.

It seems to have worked as intended, so this can be merged!

ocaisa

This is already merged so I am ignoring those linting warnings

bedroge added 7 commits May 8, 2026 16:33

move version-specific things to vars files

76da006

vars files for each version

52aba28

do manual git checkouts for git-based overlays

1d6c0f8

fail if there is no vars file for the specified version

e02ecde

set auto-sync

83a51db

fix typo

c0b20c1

use false instead of no

382a88b

bedroge added 2 commits May 11, 2026 23:17

bump default version to 2026.06

70ee3d5

rename auto-sync to autosync

9b86144

use latest commit

da3a27a

use latest bootstrap script

96101cb

use loops for all git-based overlays

b6f8f0a

bedroge added 7 commits May 13, 2026 13:30

dont install set, but just a list of packages

2d798be

add list of packages

5620284

still install set if it's defined

7e0a6d5

empty list of package sets

9704f7c

use correct var name

51740ad

fix syntax

a2cd0f1

fix long line

e161b41

casparvl added bot:deploy Ask bot to deploy built tarballs for compat layer and removed bot:deploy Ask bot to deploy built tarballs for compat layer labels Jun 30, 2026

This was referenced Jul 1, 2026

Add check for the existence of EESSI_SITE_SOFTWARE_PATH in EESSI-extend EESSI/software-layer-scripts#235

Open

Job dir collision when bot is installed on multiple repositories EESSI/eessi-bot-software-layer#381

Open

boegel changed the title ~~[WIP] Compatibility layer for EESSI version 2026.x~~ Compatibility layer for EESSI version 2026.06 Jul 1, 2026

Neves-P mentioned this pull request Jul 1, 2026

cleanup of tarball bucket to fix automated ingestion EESSI/filesystem-layer#185

Open

Neves-P approved these changes Jul 7, 2026

View reviewed changes

ocaisa approved these changes Jul 7, 2026

View reviewed changes

ocaisa merged commit 89f2847 into EESSI:main Jul 7, 2026
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