Rename 000031 to drop "DIET" from its name and filename - #266
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Follow-up to #262, which re-scoped the record after finding the contact-dependent DIET mechanism was never supported by its cited source. The human-readable label and path still asserted it. - kb/communities/Geobacter_Clostridium_DIET.yaml -> kb/communities/Geobacter_Clostridium_Interspecies_Electron_Transfer_Coculture.yaml - name: "Geobacter-Clostridium DIET Community" -> "Geobacter-Clostridium Interspecies Electron Transfer Coculture" The id CommunityMech:000031 is UNCHANGED. It is the stable cross-repo key; only the label and path moved, so external references by id keep resolving. Derived artifacts were regenerated rather than hand-edited: just gen-browser, gen-html (305 communities + browser + landing), gen-umap, gen-community-pages, and scripts/generate_validation_report.py. docs/community_graph.html is the one exception -- no generator recipe exists for it in this repo, so its three references were replaced textually; it should be regenerated from source if a recipe is added. The remaining "DIET" strings in NEXT_TASKS.md are the intentional before -> after notation in the rename note. Verification: record validates; no stale references outside research/ artifacts. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
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- PR #255 Suillus-Bacillus thiamine SynCom: merged after review (id 000312, no collision, validates, no snippet mismatches, dangling-check clean). Record count 305. Logged an optional causal-edge pass as follow-up since it carries no downstream edges. - #258 dangling edges: DONE — 7 retargeted, 7 dropped as self-referential restatements whose claims survive verbatim in the source node descriptions. 40 -> 26 integrity issues, dangling 14 -> 0. No nodes minted. - #257 snippet gates: DONE — fixed two audit cache bugs (a real full text discarded as a stub; the snippet stripper eating full text past a notes section), MISMATCH 166 -> 140, NOCONTENT 794 -> 756, and added the RENDERING bucket so validator errors == RENDERING + MISMATCH. - 000031 rename: DONE (#266), id unchanged, derived artifacts regenerated. Co-authored-by: Claude Opus 5 (1M context) <noreply@anthropic.com>
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Follow-up to #262, which re-scoped this record after finding the contact-dependent DIET mechanism was never supported by its cited source. The human-readable label and path still asserted it.
Geobacter_Clostridium_DIET.yamlGeobacter_Clostridium_Interspecies_Electron_Transfer_Coculture.yamlnameidCommunityMech:000031The id is deliberately untouched — it's the stable cross-repo key, so anything referencing the record by id keeps resolving. Only the label and path moved.
Derived artifacts were regenerated, not hand-edited
just gen-browser,gen-html(305 communities + browser + landing),gen-umap,gen-community-pages, andscripts/generate_validation_report.py.docs/community_graph.htmlhas no generator recipe in this repo, so its three references were replaced textually. If a recipe is added later it should be regenerated from source. Flagging rather than burying it, since a hand-edited derived artifact is exactly the kind of thing that silently drifts.Verification
Geobacter_Clostridium_DIET/ "Geobacter-Clostridium DIET Community" references remain outside gitignoredresearch/artifactsNEXT_TASKS.mdare the intentional before → after notation in the rename noteNote this branch is off
main, so its snippet-audit and network-integrity numbers predate the still-open #264 and #265.🤖 Generated with Claude Code