Skip to content

Refactoring and cran prep v0.1.6#5

Merged
Arvindiyer merged 6 commits into
mainfrom
dev
Jun 5, 2026
Merged

Refactoring and cran prep v0.1.6#5
Arvindiyer merged 6 commits into
mainfrom
dev

Conversation

@Arvindiyer
Copy link
Copy Markdown
Member

  • Removed reshape2 dependency; replaced with base R equivalents (tapply, as.data.frame.table).
  • Fixed theme_ridges() partial argument match (centercenter_axis_labels).
  • Fixed parallel log file leak in null_model_parallel using tempfile() and on.exit().
  • Refactored selectX() to eliminate duplicate verbose/non-verbose code paths.
  • Added utils::globalVariables() declarations to suppress R CMD check NOTEs for ggplot2 aesthetics.
  • Dropped SystemRequirements: C++14 from DESCRIPTION.
  • Added GitHub community health files: CONTRIBUTING.md, CODE_OF_CONDUCT.md, issue templates, PR template, and CI workflow.
  • Expanded test coverage with test-gam_utils.R.
  • Repository migrated: development moved from personal branches to CSOgroup/SelectSim; dev branch merged into main for initial public release.
  • Bumped version to 0.1.6 across all source files

@coderabbitai
Copy link
Copy Markdown

coderabbitai Bot commented Jun 5, 2026

Important

Review skipped

Too many files!

This PR contains 152 files, which is 2 over the limit of 150.

To get a review, narrow the scope:
• coderabbit review --type committed # exclude uncommitted changes
• coderabbit review --dir # limit to a subdirectory
• coderabbit review --base # compare against a closer base

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 09c5bdf5-57d8-4d5e-ba5f-2766fd8c7e64

📥 Commits

Reviewing files that changed from the base of the PR and between b380ebd and 0e6cb92.

⛔ Files ignored due to path filters (148)
  • docs/articles/introduction_files/figure-html/unnamed-chunk-7-1.png is excluded by !**/*.png
  • docs/deps/bootstrap-5.3.8/bootstrap.bundle.min.js is excluded by !**/*.min.js
  • docs/deps/bootstrap-5.3.8/bootstrap.bundle.min.js.map is excluded by !**/*.map, !**/*.min.js.map
  • docs/deps/bootstrap-5.3.8/fonts/07d40e985ad7c747025dabb9f22142c4.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/1Ptug8zYS_SKggPNyC0ITw.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/1Ptug8zYS_SKggPNyCAIT5lu.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/1Ptug8zYS_SKggPNyCIIT5lu.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/1Ptug8zYS_SKggPNyCMIT5lu.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/1Ptug8zYS_SKggPNyCkIT5lu.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/1f5e011d6aae0d98fc0518e1a303e99a.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/4iCs6KVjbNBYlgoKcQ72j00.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/4iCs6KVjbNBYlgoKcg72j00.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/4iCs6KVjbNBYlgoKcw72j00.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/4iCs6KVjbNBYlgoKew72j00.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/4iCs6KVjbNBYlgoKfA72j00.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/4iCs6KVjbNBYlgoKfw72.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/4iCv6KVjbNBYlgoCxCvjs2yNL4U.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/4iCv6KVjbNBYlgoCxCvjsGyN.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/4iCv6KVjbNBYlgoCxCvjtGyNL4U.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/4iCv6KVjbNBYlgoCxCvjvGyNL4U.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/4iCv6KVjbNBYlgoCxCvjvWyNL4U.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/4iCv6KVjbNBYlgoCxCvjvmyNL4U.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/626330658504e338ee86aec8e957426b.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7jsDJT9g.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7ksDJT9g.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7nsDI.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7osDJT9g.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7psDJT9g.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7qsDJT9g.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7rsDJT9g.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xK3dSBYKcSV-LCoeQqfX1RYOo3qN67lqDY.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xK3dSBYKcSV-LCoeQqfX1RYOo3qNK7lqDY.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xK3dSBYKcSV-LCoeQqfX1RYOo3qNa7lqDY.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xK3dSBYKcSV-LCoeQqfX1RYOo3qNq7lqDY.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xK3dSBYKcSV-LCoeQqfX1RYOo3qO67lqDY.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xK3dSBYKcSV-LCoeQqfX1RYOo3qOK7l.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xK3dSBYKcSV-LCoeQqfX1RYOo3qPK7lqDY.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3i54rwkxduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3i54rwlBduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3i54rwlxdu.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3i54rwmBduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3i54rwmRduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3i54rwmhduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3i54rwmxduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwkxduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwlBduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwlxdu.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwmBduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwmRduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwmhduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwmxduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ik4zwkxduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ik4zwlBduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ik4zwlxdu.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ik4zwmBduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ik4zwmRduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ik4zwmhduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ik4zwmxduz8A.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/CSR54z1Qlv-GDxkbKVQ_dFsvWNBeudwk.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/CSR54z1Qlv-GDxkbKVQ_dFsvWNReuQ.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/CSR54z1Qlv-GDxkbKVQ_dFsvWNdeudwk.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/CSR54z1Qlv-GDxkbKVQ_dFsvWNheudwk.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/CSR54z1Qlv-GDxkbKVQ_dFsvWNleudwk.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/CSR54z1Qlv-GDxkbKVQ_dFsvWNpeudwk.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/CSR54z1Qlv-GDxkbKVQ_dFsvWNteudwk.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/CSR64z1Qlv-GDxkbKVQ_fO0KTet_.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/CSR64z1Qlv-GDxkbKVQ_fO4KTet_.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/CSR64z1Qlv-GDxkbKVQ_fO8KTet_.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/CSR64z1Qlv-GDxkbKVQ_fOAKTQ.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/CSR64z1Qlv-GDxkbKVQ_fOMKTet_.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/CSR64z1Qlv-GDxkbKVQ_fOQKTet_.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/CSR64z1Qlv-GDxkbKVQ_fOwKTet_.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/HI_QiYsKILxRpg3hIP6sJ7fM7PqlONvQlMIXxw.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/HI_QiYsKILxRpg3hIP6sJ7fM7PqlONvUlMI.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/HI_QiYsKILxRpg3hIP6sJ7fM7PqlONvXlMIXxw.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/HI_QiYsKILxRpg3hIP6sJ7fM7PqlONvYlMIXxw.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/HI_QiYsKILxRpg3hIP6sJ7fM7PqlONvZlMIXxw.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/HI_QiYsKILxRpg3hIP6sJ7fM7PqlONvalMIXxw.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/HI_QiYsKILxRpg3hIP6sJ7fM7PqlONvblMIXxw.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/HI_SiYsKILxRpg3hIP6sJ7fM7PqlM-vWjMY.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/HI_SiYsKILxRpg3hIP6sJ7fM7PqlMOvWjMY.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/HI_SiYsKILxRpg3hIP6sJ7fM7PqlMevWjMY.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/HI_SiYsKILxRpg3hIP6sJ7fM7PqlMuvWjMY.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/HI_SiYsKILxRpg3hIP6sJ7fM7PqlOevWjMY.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/HI_SiYsKILxRpg3hIP6sJ7fM7PqlPevW.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/HI_SiYsKILxRpg3hIP6sJ7fM7PqlPuvWjMY.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/JTUSjIg1_i6t8kCHKm459W1hyzbi.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/JTUSjIg1_i6t8kCHKm459WRhyzbi.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/JTUSjIg1_i6t8kCHKm459WZhyzbi.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/JTUSjIg1_i6t8kCHKm459Wdhyzbi.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/JTUSjIg1_i6t8kCHKm459Wlhyw.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/KFO7CnqEu92Fr1ME7kSn66aGLdTylUAMa3-UBGEe.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/KFO7CnqEu92Fr1ME7kSn66aGLdTylUAMa3CUBGEe.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/KFO7CnqEu92Fr1ME7kSn66aGLdTylUAMa3GUBGEe.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/KFO7CnqEu92Fr1ME7kSn66aGLdTylUAMa3KUBGEe.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/KFO7CnqEu92Fr1ME7kSn66aGLdTylUAMa3OUBGEe.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/KFO7CnqEu92Fr1ME7kSn66aGLdTylUAMa3iUBGEe.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/KFO7CnqEu92Fr1ME7kSn66aGLdTylUAMa3yUBA.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/KFO7CnqEu92Fr1ME7kSn66aGLdTylUAMawCUBGEe.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/KFO7CnqEu92Fr1ME7kSn66aGLdTylUAMaxKUBGEe.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/QGYpz_kZZAGCONcK2A4bGOj8mNhN.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/S6u8w4BMUTPHjxsAUi-qJCY.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/S6u8w4BMUTPHjxsAXC-q.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/S6u9w4BMUTPHh6UVSwaPGR_p.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/S6u9w4BMUTPHh6UVSwiPGQ.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/S6u9w4BMUTPHh7USSwaPGR_p.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/S6u9w4BMUTPHh7USSwiPGQ.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/S6uyw4BMUTPHjx4wXg.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/S6uyw4BMUTPHjxAwXjeu.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/UcC73FwrK3iLTeHuS_nVMrMxCp50SjIa0ZL7SUc.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/UcC73FwrK3iLTeHuS_nVMrMxCp50SjIa1ZL7.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/UcC73FwrK3iLTeHuS_nVMrMxCp50SjIa1pL7SUc.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/UcC73FwrK3iLTeHuS_nVMrMxCp50SjIa25L7SUc.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/UcC73FwrK3iLTeHuS_nVMrMxCp50SjIa2JL7SUc.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/UcC73FwrK3iLTeHuS_nVMrMxCp50SjIa2ZL7SUc.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/UcC73FwrK3iLTeHuS_nVMrMxCp50SjIa2pL7SUc.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/XRXV3I6Li01BKofIMeaBXso.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/XRXV3I6Li01BKofINeaB.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/XRXV3I6Li01BKofIO-aBXso.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/XRXV3I6Li01BKofIOOaBXso.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/XRXV3I6Li01BKofIOuaBXso.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/c2f002b3a87d3f9bfeebb23d32cfd9f8.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/ee91700cdbf7ce16c054c2bb8946c736.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqW106F15M.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWt06F15M.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWtE6F15M.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWtU6F15M.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWtk6F15M.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWu06F15M.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWuU6F.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWuk6F15M.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWvU6F15M.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWxU6F15M.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTS-muw.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTS2mu1aB.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTSCmu1aB.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTSGmu1aB.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTSKmu1aB.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTSOmu1aB.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTSumu1aB.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTSymu1aB.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTUGmu1aB.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTVOmu1aB.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/q5uGsou0JOdh94bfuQltOxU.woff2 is excluded by !**/*.woff2
  • docs/deps/bootstrap-5.3.8/fonts/q5uGsou0JOdh94bfvQlt.woff2 is excluded by !**/*.woff2
  • docs/reference/figures/SelectSim_method.png is excluded by !**/*.png
  • docs/reference/obs_exp_scatter-1.png is excluded by !**/*.png
  • docs/reference/ridge_plot_ed-1.png is excluded by !**/*.png
📒 Files selected for processing (152)
  • .Rbuildignore
  • .github/ISSUE_TEMPLATE/bug_report.md
  • .github/ISSUE_TEMPLATE/feature_request.md
  • .github/PULL_REQUEST_TEMPLATE.md
  • .github/workflows/R-CMD-check.yaml
  • .gitignore
  • CODE_OF_CONDUCT.md
  • CONTRIBUTING.md
  • DESCRIPTION
  • NAMESPACE
  • NEWS.md
  • R/data.R
  • R/gam_utils.r
  • R/selectX_create.r
  • R/selectX_plot.R
  • R/selectX_run.R
  • R/selectX_stats.r
  • README.Rmd
  • README.md
  • _pkgdown.yml
  • cran-comments.md
  • dev/config_attachment.yaml
  • docs/404.html
  • docs/404.md
  • docs/CODE_OF_CONDUCT.html
  • docs/CODE_OF_CONDUCT.md
  • docs/CONTRIBUTING.html
  • docs/CONTRIBUTING.md
  • docs/INSTALLATION.html
  • docs/INSTALLATION.md
  • docs/LICENSE-text.html
  • docs/LICENSE-text.md
  • docs/LICENSE.html
  • docs/LICENSE.md
  • docs/PULL_REQUEST_TEMPLATE.html
  • docs/PULL_REQUEST_TEMPLATE.md
  • docs/articles/data_processing.html
  • docs/articles/data_processing.md
  • docs/articles/doc.css
  • docs/articles/index.html
  • docs/articles/index.md
  • docs/articles/introduction.html
  • docs/articles/introduction.md
  • docs/authors.html
  • docs/authors.md
  • docs/deps/bootstrap-5.3.8/bootstrap.min.css
  • docs/deps/bootstrap-5.3.8/font.css
  • docs/deps/data-deps.txt
  • docs/extra.css
  • docs/index.html
  • docs/index.md
  • docs/katex-auto.js
  • docs/lightswitch.js
  • docs/llms.txt
  • docs/news/index.html
  • docs/news/index.md
  • docs/pkgdown.js
  • docs/pkgdown.yml
  • docs/reference/GENIE_maf_schema.html
  • docs/reference/GENIE_maf_schema.md
  • docs/reference/TCGA_maf_schema.html
  • docs/reference/TCGA_maf_schema.md
  • docs/reference/add.html
  • docs/reference/add.md
  • docs/reference/al.pairwise.alteration.stats.html
  • docs/reference/al.pairwise.alteration.stats.md
  • docs/reference/al.stats.html
  • docs/reference/al.stats.md
  • docs/reference/am.pairwise.alteration.coverage.html
  • docs/reference/am.pairwise.alteration.coverage.md
  • docs/reference/am.pairwise.alteration.overlap.html
  • docs/reference/am.pairwise.alteration.overlap.md
  • docs/reference/am.stats.html
  • docs/reference/am.stats.md
  • docs/reference/am.weight.pairwise.alteration.overlap.html
  • docs/reference/am.weight.pairwise.alteration.overlap.md
  • docs/reference/binary.yule.html
  • docs/reference/binary.yule.md
  • docs/reference/effectSize.html
  • docs/reference/effectSize.md
  • docs/reference/estimateFDR2.html
  • docs/reference/estimateFDR2.md
  • docs/reference/estimate_p_val.html
  • docs/reference/estimate_p_val.md
  • docs/reference/estimate_pairwise_p.html
  • docs/reference/estimate_pairwise_p.md
  • docs/reference/filter_maf_column.html
  • docs/reference/filter_maf_column.md
  • docs/reference/filter_maf_complex.html
  • docs/reference/filter_maf_complex.md
  • docs/reference/filter_maf_gene.name.html
  • docs/reference/filter_maf_gene.name.md
  • docs/reference/filter_maf_ignore.html
  • docs/reference/filter_maf_ignore.md
  • docs/reference/filter_maf_missense.html
  • docs/reference/filter_maf_missense.md
  • docs/reference/filter_maf_mutation.type.html
  • docs/reference/filter_maf_mutation.type.md
  • docs/reference/filter_maf_mutations.html
  • docs/reference/filter_maf_mutations.md
  • docs/reference/filter_maf_sample.html
  • docs/reference/filter_maf_sample.md
  • docs/reference/filter_maf_schema.html
  • docs/reference/filter_maf_schema.md
  • docs/reference/filter_maf_truncating.html
  • docs/reference/filter_maf_truncating.md
  • docs/reference/generateS.html
  • docs/reference/generateS.md
  • docs/reference/generateW_block.html
  • docs/reference/generateW_block.md
  • docs/reference/generateW_mean_tmb.html
  • docs/reference/generateW_mean_tmb.md
  • docs/reference/get.blocks.html
  • docs/reference/get.blocks.md
  • docs/reference/index.html
  • docs/reference/index.md
  • docs/reference/interaction.table.html
  • docs/reference/interaction.table.md
  • docs/reference/luad_maf.html
  • docs/reference/luad_maf.md
  • docs/reference/luad_result.html
  • docs/reference/luad_result.md
  • docs/reference/luad_run_data.html
  • docs/reference/luad_run_data.md
  • docs/reference/maf2gam.html
  • docs/reference/maf2gam.md
  • docs/reference/mutation_type.html
  • docs/reference/mutation_type.md
  • docs/reference/new.AL.general.html
  • docs/reference/new.AL.general.md
  • docs/reference/new.ALS.html
  • docs/reference/new.ALS.md
  • docs/reference/new.AMS.html
  • docs/reference/new.AMS.md
  • docs/reference/null_model_parallel.html
  • docs/reference/null_model_parallel.md
  • docs/reference/null_model_parallel_debug.md
  • docs/reference/obs_exp_scatter.html
  • docs/reference/obs_exp_scatter.md
  • docs/reference/oncokb_genes.html
  • docs/reference/oncokb_genes.md
  • docs/reference/oncokb_truncating_genes.html
  • docs/reference/oncokb_truncating_genes.md
  • docs/reference/overlap_pair_extract.html
  • docs/reference/overlap_pair_extract.md
  • docs/reference/r.am.pairwise.alteration.overlap.html
  • docs/reference/r.am.pairwise.alteration.overlap.md
  • docs/reference/r.effectSize.html
  • docs/reference/r.effectSize.md
  • docs/reference/retrieveOutliers.html
  • docs/reference/retrieveOutliers.md
  • docs/reference/ridge_plot_ed.html

You can disable this status message by setting the reviews.review_status to false in the CodeRabbit configuration file.

Use the checkbox below for a quick retry:

  • 🔍 Trigger review
✨ Finishing Touches
🧪 Generate unit tests (beta)
  • Create PR with unit tests
  • Commit unit tests in branch dev

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

Comment @coderabbitai help to get the list of available commands and usage tips.

@Arvindiyer Arvindiyer merged commit bc7dac9 into main Jun 5, 2026
5 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant