Installation problem

[123chenshixin]

Hello,

Thank you for developing and sharing Fullscope.

I encountered an issue while following the installation instructions in the README. The documented build commands are:

mkdir build && cd build
cmake .. -DCMAKE_BUILD_TYPE=Release
make -j$(nproc)

However, I could not find a CMakeLists.txt file in the current repository. Therefore, running CMake produces the following error:

The source directory does not appear to contain CMakeLists.txt.

In addition, the file scripts/Fullscope-1.0 is only 2 bytes in size. Running the file command gives:

Fullscope-1.0: very short file (no magic)

Therefore, it does not appear to be a complete Linux executable.

Could you please provide one of the following?

1. The missing CMakeLists.txt or Makefile required to compile the source code;
2. A valid precompiled Linux binary of Fullscope-1.0;
3. More detailed installation instructions, including the required dependencies and versions.

Thank you very much for your help.

[Y0NEKO]

Hello,

Thank you for reporting this issue, and we apologize for the incomplete files and outdated installation instructions.
We have now updated the repository and released Fullscope v1.2.0. The update includes:
A complete CMakeLists.txt;
The full C++ source code;
Conda environment files containing the required dependencies;
A portable installation script;
Updated installation and usage instructions;
A small test dataset and smoke test.
The incomplete scripts/Fullscope-1.0 file has been removed. Fullscope now provides a unified command-line interface, while the compiled C++ engine is installed internally.
The current version requires Linux, a C++23-compatible compiler, CMake, SeqAn3, cereal, and HTSlib. These dependencies are included in environment-core.yml. A complete environment containing the optional R/Bambu dependencies is also provided in environment.yml.
Thank you again for bringing this to our attention. Please let us know if you encounter any further problems.

Best regards,
Hx, Liu