From 7ef867e32e8d56752f5e33ca2d03f576a0b2f46d Mon Sep 17 00:00:00 2001
From: Jim Schaff <schaff.jim@gmail.com>
Date: Fri, 3 Jul 2026 07:58:54 -0400
Subject: [PATCH 1/2] Fix title casing: pyvcell -> pyVCell

The .zenodo.json and CITATION.cff titles were lowercased ("pyvcell") while the
published Zenodo record shows "pyVCell". Since archiving uses .zenodo.json
verbatim, the next release would have regressed the published title. Aligns both
files with the displayed title.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BZx7w9BexQc9wWU5JoHYaF
---
 .zenodo.json | 2 +-
 CITATION.cff | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.zenodo.json b/.zenodo.json
index de2512d..b266ed4 100644
--- a/.zenodo.json
+++ b/.zenodo.json
@@ -1,6 +1,6 @@
 {
   "upload_type": "software",
-  "title": "pyvcell",
+  "title": "pyVCell",
   "license": "mit",
   "creators": [
     {
diff --git a/CITATION.cff b/CITATION.cff
index 2ed80f4..2334d84 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -1,6 +1,6 @@
 cff-version: 1.2.0
 message: "If you use this software, please cite it using these metadata."
-title: "pyvcell"
+title: "pyVCell"
 type: software
 repository-code: "https://github.com/virtualcell/pyvcell"
 license: MIT

From 84fbe1550f1be9e66c35507ac3c8eb244432290b Mon Sep 17 00:00:00 2001
From: Jim Schaff <schaff.jim@gmail.com>
Date: Fri, 3 Jul 2026 08:54:22 -0400
Subject: [PATCH 2/2] Apply prettier formatting (fixes quality check)

Runs the repo's prettier pre-commit hook so the `quality` gate passes. Normalizes
.zenodo.json indentation and quote style in CITATION.cff / zenodo-drift.yml; no
semantic changes (title stays pyVCell).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BZx7w9BexQc9wWU5JoHYaF
---
 .github/workflows/zenodo-drift.yml |  2 +-
 .zenodo.json                       | 52 +++++++++++++++---------------
 CITATION.cff                       |  2 +-
 3 files changed, 28 insertions(+), 28 deletions(-)

diff --git a/.github/workflows/zenodo-drift.yml b/.github/workflows/zenodo-drift.yml
index b735576..4c8becf 100644
--- a/.github/workflows/zenodo-drift.yml
+++ b/.github/workflows/zenodo-drift.yml
@@ -2,7 +2,7 @@ name: Zenodo drift check
 
 on:
   schedule:
-    - cron: '0 12 * * 1'
+    - cron: "0 12 * * 1"
   workflow_dispatch: {}
 
 jobs:
diff --git a/.zenodo.json b/.zenodo.json
index b266ed4..87e8a26 100644
--- a/.zenodo.json
+++ b/.zenodo.json
@@ -1,28 +1,28 @@
 {
-  "upload_type": "software",
-  "title": "pyVCell",
-  "license": "mit",
-  "creators": [
-    {
-      "name": "Schaff, James C.",
-      "affiliation": "University of Connecticut School of Medicine",
-      "orcid": "0000-0003-3286-7736"
-    },
-    {
-      "name": "Patrie, Alexander",
-      "affiliation": "University of Connecticut School of Medicine",
-      "orcid": "0009-0002-6886-2291"
-    },
-    {
-      "name": "Drescher, Logan",
-      "affiliation": "University of Connecticut School of Medicine"
-    },
-    {
-      "name": "Moraru, Ion I.",
-      "affiliation": "University of Connecticut School of Medicine",
-      "orcid": "0000-0002-3746-9676"
-    }
-  ],
-  "description": "<p>pyvcell is the Python wrapper for Virtual Cell (VCell) modeling and simulation — local scripting of spatial modeling, simulation, data analysis, and visualization, plus access to the Virtual Cell remote APIs. Supports VCML and SBML import/export.</p>",
-  "related_identifiers": []
+    "upload_type": "software",
+    "title": "pyVCell",
+    "license": "mit",
+    "creators": [
+        {
+            "name": "Schaff, James C.",
+            "affiliation": "University of Connecticut School of Medicine",
+            "orcid": "0000-0003-3286-7736"
+        },
+        {
+            "name": "Patrie, Alexander",
+            "affiliation": "University of Connecticut School of Medicine",
+            "orcid": "0009-0002-6886-2291"
+        },
+        {
+            "name": "Drescher, Logan",
+            "affiliation": "University of Connecticut School of Medicine"
+        },
+        {
+            "name": "Moraru, Ion I.",
+            "affiliation": "University of Connecticut School of Medicine",
+            "orcid": "0000-0002-3746-9676"
+        }
+    ],
+    "description": "<p>pyvcell is the Python wrapper for Virtual Cell (VCell) modeling and simulation — local scripting of spatial modeling, simulation, data analysis, and visualization, plus access to the Virtual Cell remote APIs. Supports VCML and SBML import/export.</p>",
+    "related_identifiers": []
 }
diff --git a/CITATION.cff b/CITATION.cff
index 2334d84..23a0115 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -4,7 +4,7 @@ title: "pyVCell"
 type: software
 repository-code: "https://github.com/virtualcell/pyvcell"
 license: MIT
-doi: 10.5281/zenodo.21127437   # concept DOI (all versions)
+doi: 10.5281/zenodo.21127437 # concept DOI (all versions)
 authors:
   - family-names: "Schaff"
     given-names: "James C."