diff --git a/src/methods_expression_correction/split/config.vsh.yaml b/src/methods_expression_correction/split/config.vsh.yaml index 9cb227219..2f1c4f9ca 100644 --- a/src/methods_expression_correction/split/config.vsh.yaml +++ b/src/methods_expression_correction/split/config.vsh.yaml @@ -28,7 +28,7 @@ engines: setup: - type: docker run: | - apt-get update + apt-get update && apt-get install -y libcurl4-openssl-dev libssl-dev libgit2-dev libxml2-dev # - type: r # packages: [fs, rlang, lifecycle] - type: r @@ -41,8 +41,9 @@ engines: # The reinstall of SingleCellExperiment triggers the correct re-install of SpatialExperiment. - type: r github: dmcable/spacexr - - type: r - github: bdsc-tds/SPLIT + - type: docker + run: | + Rscript -e 'remotes::install_github("bdsc-tds/SPLIT")' - type: native