From aeb84d8c1e45f5c3cd73f23a320fa529b64e9fea Mon Sep 17 00:00:00 2001
From: itrujnara <itrujnara@wp.pl>
Date: Tue, 30 Jun 2026 14:15:55 +0200
Subject: [PATCH 1/2] Bump diamond/cluster to 2.2.2

---
 modules/nf-core/diamond/cluster/environment.yml | 2 +-
 modules/nf-core/diamond/cluster/main.nf         | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/modules/nf-core/diamond/cluster/environment.yml b/modules/nf-core/diamond/cluster/environment.yml
index 5dc13ad057b2..a1b7ff3f55b0 100644
--- a/modules/nf-core/diamond/cluster/environment.yml
+++ b/modules/nf-core/diamond/cluster/environment.yml
@@ -4,4 +4,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::diamond=2.2.1
+  - bioconda::diamond=2.2.2
diff --git a/modules/nf-core/diamond/cluster/main.nf b/modules/nf-core/diamond/cluster/main.nf
index 5f68bbc87d87..263f92c396fa 100644
--- a/modules/nf-core/diamond/cluster/main.nf
+++ b/modules/nf-core/diamond/cluster/main.nf
@@ -4,8 +4,8 @@ process DIAMOND_CLUSTER {
 
     conda "${moduleDir}/environment.yml"
     container "${workflow.containerEngine in ['singularity', 'apptainer'] && !task.ext.singularity_pull_docker_container
-        ? 'https://depot.galaxyproject.org/singularity/diamond:2.2.1--he361c42_0'
-        : 'quay.io/biocontainers/diamond:2.2.1--he361c42_0'}"
+        ? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/63/63594b00a9e68e690f398d9b9788a883753442dedcce590b4ba5aa97cff200f1/data'
+        : 'community.wave.seqera.io/library/diamond:2.2.2--910ae987965d0d4d'}"
 
     input:
     tuple val(meta), path(db)

From 72f6fb6785fa2cd0d06c7feec18f8595a833bfa3 Mon Sep 17 00:00:00 2001
From: Igor Trujnara <53370556+itrujnara@users.noreply.github.com>
Date: Wed, 1 Jul 2026 07:19:39 +0000
Subject: [PATCH 2/2] Update snapshots for diamond/cluster

---
 .../diamond/cluster/tests/main.nf.test.snap   | 20 +++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/modules/nf-core/diamond/cluster/tests/main.nf.test.snap b/modules/nf-core/diamond/cluster/tests/main.nf.test.snap
index fa86a0833bda..5f9320b85cea 100644
--- a/modules/nf-core/diamond/cluster/tests/main.nf.test.snap
+++ b/modules/nf-core/diamond/cluster/tests/main.nf.test.snap
@@ -7,15 +7,15 @@
                     [
                         "DIAMOND_CLUSTER",
                         "diamond",
-                        "2.2.1"
+                        "2.2.2"
                     ]
                 ]
             }
         ],
-        "timestamp": "2026-06-11T10:36:59.391932545",
+        "timestamp": "2026-07-01T07:15:49.426066923",
         "meta": {
             "nf-test": "0.9.5",
-            "nextflow": "26.04.3"
+            "nextflow": "26.04.4"
         }
     },
     "human - dmnd": {
@@ -26,15 +26,15 @@
                     [
                         "DIAMOND_CLUSTER",
                         "diamond",
-                        "2.2.1"
+                        "2.2.2"
                     ]
                 ]
             }
         ],
-        "timestamp": "2026-06-11T10:37:47.938995122",
+        "timestamp": "2026-07-01T07:16:36.593410977",
         "meta": {
             "nf-test": "0.9.5",
-            "nextflow": "26.04.3"
+            "nextflow": "26.04.4"
         }
     },
     "human - fasta - stub": {
@@ -53,7 +53,7 @@
                     [
                         "DIAMOND_CLUSTER",
                         "diamond",
-                        "2.2.1"
+                        "2.2.2"
                     ]
                 ],
                 "tsv": [
@@ -69,15 +69,15 @@
                     [
                         "DIAMOND_CLUSTER",
                         "diamond",
-                        "2.2.1"
+                        "2.2.2"
                     ]
                 ]
             }
         ],
-        "timestamp": "2026-06-11T10:32:10.51695773",
+        "timestamp": "2026-07-01T07:16:43.605300973",
         "meta": {
             "nf-test": "0.9.5",
-            "nextflow": "26.04.3"
+            "nextflow": "26.04.4"
         }
     }
 }
\ No newline at end of file