From 9ff174d5357b82f2a67a775280e859ca8173e499 Mon Sep 17 00:00:00 2001 From: Anas-Elhounsri Date: Wed, 1 Jul 2026 09:56:44 +0200 Subject: [PATCH] Removed the redundant BACKUP dir --- BACKUP/ground_truth/comparison.html | 529 ---- BACKUP/ground_truth/index.html | 305 -- BACKUP/ground_truth/summary_0_3_0.json | 2492 ----------------- BACKUP/ground_truth/summary_0_3_1.json | 2070 -------------- .../summary_pitfalls_warnings.json | 2072 -------------- docs/ground_truth/home.html | 2 +- 6 files changed, 1 insertion(+), 7469 deletions(-) delete mode 100644 BACKUP/ground_truth/comparison.html delete mode 100644 BACKUP/ground_truth/index.html delete mode 100644 BACKUP/ground_truth/summary_0_3_0.json delete mode 100644 BACKUP/ground_truth/summary_0_3_1.json delete mode 100644 BACKUP/ground_truth/summary_pitfalls_warnings.json diff --git a/BACKUP/ground_truth/comparison.html b/BACKUP/ground_truth/comparison.html deleted file mode 100644 index 97f20ba..0000000 --- a/BACKUP/ground_truth/comparison.html +++ /dev/null @@ -1,529 +0,0 @@ - - - - - - RsMetaCheck — 0.3.0 vs 0.3.1 Comparison - - - - - - -

0.3.0 vs 0.3.1 — Comparison

- -

- This page compares the detection results of RsMetaCheck version 0.3.0 and - version 0.3.1 on the ground truth dataset, highlighting improvements and - corrections in pitfall and warning detection across the 85 openAIRE - repositories. -

- -

- -
-

0.3.0 Pitfall & Warning Distribution

- -
-
-

Pitfalls (P001–P019)

- -
-
-

Warnings (W001–W010)

- -
-
- -
-

0.3.1 Pitfall & Warning Distribution

- -
-
-

Pitfalls (P001–P019)

- -
-
-

Warnings (W001–W010)

- -
-
- -
-

The “Before & After” Comparison

- -
-
-

Pitfalls

- -
-
-

Warnings

- -
-
- -
-

Repository-Level Comparison

- -
- - - - - - - - - - - -
RepositoryCode0.3.0 Source0.3.0 Description0.3.1 Source0.3.1 Description
-
- - - - - diff --git a/BACKUP/ground_truth/index.html b/BACKUP/ground_truth/index.html deleted file mode 100644 index d1fdb68..0000000 --- a/BACKUP/ground_truth/index.html +++ /dev/null @@ -1,305 +0,0 @@ - - - - - - RsMetaCheck Pitfalls Report - - - - - - -

Ground Truth Report

- -

- This ground truth study evaluated 84 software repositories from the openAIRE graph. - All repositories contain a codemeta.json file and were examined across - multiple metadata sources including package manifests (e.g., setup.py, - package.json, DESCRIPTION), citation files - (CITATION.cff), licensing files, README documentation, and other - structured or semi-structured metadata artifacts. -

- -

- -
- - - - - - - - - - -
RepositoryCommit IDPitfall / Warning CodeDescriptionSource File
-
- - - - \ No newline at end of file diff --git a/BACKUP/ground_truth/summary_0_3_0.json b/BACKUP/ground_truth/summary_0_3_0.json deleted file mode 100644 index 4c5616d..0000000 --- a/BACKUP/ground_truth/summary_0_3_0.json +++ /dev/null @@ -1,2492 +0,0 @@ -{ - "AI5GW/Goertzel": { - "url": "https://github.com/AI5GW/Goertzel", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W003": { - "source_file": "README.md", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/AI5GW/Goertzel/2eb355240d0a66147309c783c91877af350414a9/LICENSE" - } - } - }, - "BM32ESRF/LaueNN": { - "url": "https://github.com/BM32ESRF/LaueNN", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: matplotlib, Keras, numpy, h5py, tensorflow, PyQt5, scikit-learn, fabio, networkx, scikit-image, tqdm, scipy" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-03-24T00:00:00' is outdated compared to repository date '2026-03-16T10:36:05'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python 3" - } - } - }, - "CardiacModelling/protocol-design-hERG": { - "url": "https://github.com/CardiacModelling/protocol-design-hERG", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.0.1' does not match release version '1.0'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/CardiacModelling/protocol-design-hERG" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: pints, myokit" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-10-18T00:00:00' is outdated compared to repository date '2025-07-10T09:56:55'" - } - } - }, - "ComputationalBiomechanicsLab/opensim-creator": { - "url": "https://github.com/ComputationalBiomechanicsLab/opensim-creator", - "pitfalls": { - "P017": { - "source_file": "codemeta.json", - "description": "version '0.7.3' does not match version '2.12.0' in pyproject.toml" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: meson, ninja" - } - } - }, - "ComputationalGenomics/Reveal": { - "url": "https://github.com/ComputationalGenomics/Reveal", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: numpy, pandas, joblib, sphinx, sphinx-autodoc-typehints, sphinx_rtd_theme, myst_parser" - } - } - }, - "DrMattG/SDGsR": { - "url": "https://github.com/DrMattG/SDGsR", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P009": { - "source_file": "codemeta.json", - "description": "codeRepository points to homepage instead of repository: https://drmattg.github.io/SDGsR/" - }, - "P013": { - "source_file": "DESCRIPTION", - "description": "License does not specify version: 'GPL (>= 3)'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/DrMattG/SDGsR" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: jsonlite, here, readr, dplyr, tidyr" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/DrMattG/SDGsR/fa1898e88b9a31a05c2b722f36d6993595536a12/LICENSE.md" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - } - } - }, - "Duke-GCB/calrissian": { - "url": "https://github.com/Duke-GCB/calrissian", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.16.0' does not match release version '0.18.1'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: hatchling" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-10-23T00:00:00' is outdated compared to repository date '2026-02-12T01:16:54'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python" - } - } - }, - "EDIorg/ecocomDP": { - "url": "https://github.com/EDIorg/ecocomDP", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: RColorBrewer, data.table, dplyr, geosphere, ggplot2, httr, lubridate, magrittr, methods, rlang, rmarkdown, stats, stringr, tidyr, tools, utils, uuid, xml2, neonOS" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - } - } - }, - "ElektraInitiative/libelektra": { - "url": "https://github.com/ElektraInitiative/libelektra", - "pitfalls": { - "P001": { - "source_file": "package.json", - "description": "version '2.0.0' does not match release version '0.10.0'" - }, - "P006": { - "source_file": "package.json", - "description": "License points to local file instead of license name: 'SEE LICENSE IN ../../../LICENSE.md'" - }, - "P009": { - "source_file": "setup.py", - "description": "codeRepository points to homepage instead of repository: https://www.libelektra.org" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'BSD'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/ElektraInitiative/libelektra" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.8.17' does not match version '2.0.0' in package.json" - } - }, - "warnings": { - "W001": { - "source_file": "package.json", - "description": "contains software requirements without versions: wheel" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-07-23T00:00:00' is outdated compared to repository date '2026-05-11T09:01:19'" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - }, - "W010": { - "source_file": "package.json", - "description": "codeRepository uses Git shorthand instead of full URL: 'github:ElektraInitiative/libelektra'" - } - } - }, - "FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization": { - "url": "https://github.com/FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization", - "pitfalls": { - "P011": { - "source_file": "metadata files", - "description": "IssueTracker URL violates expected format: https://gvipers.imt-nord-europe.fr/m3tal/csdvp-evolutionary-algorithm-optimization/issues" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: gcc, cMake, swh:1:dir:cc83fa70d755c8bae509b3c9eb56cb3a8e7a339e;origin=https://gitlab.inria.fr/paradiseo/paradiseo;visit=swh:1:snp:ab929bf560e9d1ad33143b73d38434e900f01858;anchor=swh:1:rev:c2a3ed4e7f67772afb37ea325c9ef80fca2b008d" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-11-20T00:00:00' is outdated compared to repository date '2024-06-11T13:07:36'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++" - } - } - }, - "FairRootGroup/DDS": { - "url": "https://github.com/FairRootGroup/DDS", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version 'master' does not match release version '3.17'" - } - }, - "warnings": {} - }, - "FairRootGroup/FairMQ": { - "url": "https://github.com/FairRootGroup/FairMQ", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version 'master' does not match release version '1.10.0'" - }, - "P006": { - "source_file": "codemeta.json", - "description": "License points to local file instead of license name: './COPYRIGHT'" - } - }, - "warnings": {} - }, - "HumanBrainProject/kg-core-sdks": { - "url": "https://github.com/HumanBrainProject/kg-core-sdks", - "pitfalls": { - "P017": { - "source_file": "codemeta.json", - "description": "version '0.9.20' does not match version '0.9.7' in package.json" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: requests, pydantic, jinja2" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-11-21T00:00:00' is outdated compared to repository date '2026-01-24T14:06:50'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python 3" - } - } - }, - "IBM/multi-variate-parallel-transformer": { - "url": "https://github.com/IBM/multi-variate-parallel-transformer", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: mgzip, pathtools, antlr4-python3-runtime, wheel, typing-extensions, maturin, hjson, ninja, msgpack, py-cpuinfo" - } - } - }, - "JSadowska/testLille": { - "url": "https://github.com/JSadowska/testLille", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/JSadowska/testLille" - } - }, - "warnings": { - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/JSadowska/testLille/a944981f43c1bd37710b8a41442754bdc95e339b/LICENSE" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python" - } - } - }, - "Kaffeegangster/tclf": { - "url": "https://github.com/Kaffeegangster/tclf", - "pitfalls": { - "P006": { - "source_file": "pyproject.toml", - "description": "License points to local file instead of license name: 'License file: LICENSE.txt'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: numpy, pandas, scikit-learn" - } - } - }, - "KonradHoeffner/rickview": { - "url": "https://github.com/KonradHoeffner/rickview", - "pitfalls": { - "P014": { - "source_file": "metadata files", - "description": "Identifier uses bare DOI instead of full URL: '10.5281/zenodo.8290117'" - } - }, - "warnings": { - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Rust" - } - } - }, - "LDEO-CREW/Pythonic-DISORT": { - "url": "https://github.com/LDEO-CREW/Pythonic-DISORT", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: numpy, scipy, ipython, matplotlib, sphinx, nbsphinx, python_docs_theme" - } - } - }, - "LanguageMachines/foliautils": { - "url": "https://github.com/LanguageMachines/foliautils", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.24' does not match release version '0.23'" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: icu, libxml2, ticcutils, libfolia" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'foliautils'" - }, - "W009": { - "source_file": "metadata files", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, - "LanguageMachines/frog": { - "url": "https://github.com/LanguageMachines/frog", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.35' does not match release version '0.34'" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: icu, libxml2, ticcutils, timbl, libfolia, mbt, ucto" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-12-05T00:00:00' is outdated compared to repository date '2026-05-07T10:29:51'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://github.com/LanguageMachines/frog/blob/master/README.md" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'frog'" - } - } - }, - "LanguageMachines/ucto": { - "url": "https://github.com/LanguageMachines/ucto", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: icu, libxml2, ticcutils, libfolia" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2025-12-11T00:00:00' is outdated compared to repository date '2026-02-09T12:18:49'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'ucto'" - } - } - }, - "Mariizero/ECGRat": { - "url": "https://github.com/Mariizero/ECGRat", - "pitfalls": { - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/Mariizero/ECGRat" - } - }, - "warnings": { - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python 3" - } - } - }, - "Miagarciaru/atlas-outreach-data-tools-for-lumi36": { - "url": "https://github.com/Miagarciaru/atlas-outreach-data-tools-for-lumi36", - "pitfalls": { - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/Miagarciaru/atlas-outreach-data-tools-for-lumi36" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: Python, ROOT" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2021-09-01T00:00:00' is outdated compared to repository date '2025-04-02T14:39:02'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++, bash" - } - } - }, - "MiguelRodo/Slides24STA5069Z": { - "url": "https://github.com/MiguelRodo/Slides24STA5069Z", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.0.0.1' does not match release version 'archive'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.0.0.1' does not match version '3.4.0-1' in DESCRIPTION" - } - }, - "warnings": { - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - } - } - }, - "MolSSI/QCEngine": { - "url": "https://github.com/MolSSI/QCEngine", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.32' does not match release version '0.50.0rc1'" - } - }, - "warnings": { - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python" - } - } - }, - "Neplex/ArchiTXT": { - "url": "https://github.com/Neplex/ArchiTXT", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: unidecode, unidecode, benepar, benepar, levenshtein, levenshtein, more-itertools, more-itertools, typing-extensions, typing-extensions, langchain-core, langchain-huggingface, streamlit-agraph, streamlit-tags" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/Neplex/ArchiTXT/e82e532453dff78fe5ea2475774be167521c0fca/LICENSE" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'ArchiTXT'" - }, - "W009": { - "source_file": "metadata files", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#wip" - } - } - }, - "Neplex/COveR": { - "url": "https://github.com/Neplex/COveR", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.1.0' does not match release version '1.0.4'" - }, - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P013": { - "source_file": "DESCRIPTION", - "description": "License does not specify version: 'GPL (>= 2)'" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2017-12-06T00:00:00' is outdated compared to repository date '2026-05-21T08:49:11'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C, R" - } - } - }, - "NeuralEnsemble/PyNN": { - "url": "https://github.com/NeuralEnsemble/PyNN", - "pitfalls": { - "P001": { - "source_file": "pyproject.toml", - "description": "version '0.12.4' does not match release version '0.12.1'" - }, - "P012": { - "source_file": "metadata files", - "description": "downloadURL is outdated or invalid: https://files.pythonhosted.org/packages/f2/04/371f66ed8175e41a3d5ee04d957f6253e378cc4616b485e4c6a1b9f27626/pynn-0.12.4.tar.gz" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: morphio, setuptools, at least one of the supported simulators: e.g. NEURON, NEST, or Brian., Python (version 3.9-3.13)" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2025-04-02T00:00:00' is outdated compared to repository date '2026-05-06T09:40:39'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python" - }, - "W005": { - "source_file": "codemeta.json", - "description": "Multiple requirements written as single string: 'at least one of the supported simulators: e.g. NEURON, NEST, or Brian.'" - } - } - }, - "PRIDE-Archive/pridepy": { - "url": "https://github.com/PRIDE-Archive/pridepy", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: requests, ratelimit, click, pytest, setuptools, boto3, botocore, tqdm, urllib3, httpx" - } - } - }, - "Pakillo/grateful": { - "url": "https://github.com/Pakillo/grateful", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: desc, knitr, remotes, renv, rmarkdown, rstudioapi, utils" - } - } - }, - "ParaStation/psmpi": { - "url": "https://github.com/ParaStation/psmpi", - "pitfalls": { - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/ParaStation/psmpi" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '2.8.0' does not match version '1.0.0' in package.json" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: pytest, pytest-xdist, pytest-html, pyyaml, retrying, junitparser" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2022-07-05T00:00:00' is outdated compared to repository date '2026-04-28T16:13:04'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C" - } - } - }, - "R3BRootGroup/sofia": { - "url": "https://github.com/R3BRootGroup/sofia", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version 'sep25' does not match release version 'dec25'" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: FairRoot, FairSoft, R3BRoot" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2025-09-15T00:00:00' is outdated compared to repository date '2025-12-31T17:53:21'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++, C" - }, - "W005": { - "source_file": "codemeta.json", - "description": "Multiple requirements written as single string: 'FairRoot, FairSoft, R3BRoot'" - } - } - }, - "Rbfinch/grepq": { - "url": "https://github.com/Rbfinch/grepq", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.4.1' does not match release version 'grepq-v1.6.4'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version 'v1.4.1' does not match version '1.6.5' in Cargo.toml" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2025-01-17T00:00:00' is outdated compared to repository date '2026-04-28T08:34:01'" - } - } - }, - "SeUniVr/PLC-RE": { - "url": "https://github.com/SeUniVr/PLC-RE", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: pandas, ray, json, modbus_tk, logging, itertools, scipy, glob2, numpy, matplotlib" - } - } - }, - "SedFoam/sedfoam": { - "url": "https://github.com/SedFoam/sedfoam", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '2412' does not match release version '2312'" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: OpenFoam (ESI version)" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2022-07-08T00:00:00' is outdated compared to repository date '2026-05-14T07:21:25'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++, OpenFoam" - } - } - }, - "Simple-Robotics/proxsuite": { - "url": "https://github.com/Simple-Robotics/proxsuite", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: numpy, scipy, cmeel[build], cmeel-eigen, cmeel-simde, typing-extensions" - } - } - }, - "Unknown": { - "url": "https://gricad-gitlab.univ-grenoble-alpes.fr/bidegarb/nautil", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: Maple" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Maple 10" - } - } - }, - "aaronmck/Badread": { - "url": "https://github.com/aaronmck/Badread", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'GPL v3.0'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/aaronmck/Badread" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: edlib, numpy, matplotlib, scipy" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2019-03-01T00:00:00' is outdated compared to repository date '2021-11-20T03:09:52'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/aaronmck/Badread/main/LICENSE" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, - "ajpelu/likelihoodTools": { - "url": "https://github.com/ajpelu/likelihoodTools", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P013": { - "source_file": "DESCRIPTION", - "description": "License does not specify version: 'GPL (>= 3)'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.1.0' does not match version '1.0.0' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: dplyr, ggplot2, rlang" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/ajpelu/likelihoodTools/e0d8fdb5b69d27a641ffc4731e8c2e5b6a21b67c/LICENSE.md" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - } - } - }, - "amd/mumps-build": { - "url": "https://github.com/amd/mumps-build", - "pitfalls": { - "P014": { - "source_file": "metadata files", - "description": "Identifier uses bare DOI instead of full URL: '10.1145/3242094'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/amd/mumps-build" - } - }, - "warnings": { - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C, Fortran" - } - } - }, - "andrew-saydjari/mfouesneau.github.com": { - "url": "https://github.com/andrew-saydjari/mfouesneau.github.com", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel" - } - } - }, - "aravind-j/EvaluateCore": { - "url": "https://github.com/aravind-j/EvaluateCore", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.1.3.9000' does not match release version 'CRAN_0.1.4'" - }, - "P003": { - "source_file": "codemeta.json", - "description": "Multiple authors found in single field: '['Dhammaprakash', 'Pandhari'] Wankhede'" - }, - "P009": { - "source_file": "DESCRIPTION", - "description": "codeRepository points to homepage instead of repository: https://github.com/aravind-j/EvaluateCore\n https://CRAN.R-project.org/package=EvaluateCore\n https://aravind-j.github.io/EvaluateCore/\n https://doi.org/10.5281/zenodo.3875930" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.1.3.9000' does not match version '0.1.4.9000' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: agricolae, boot, car, cluster, dplyr, entropy, ggcorrplot, ggplot2, ggtext, grDevices, gridExtra, kSamples, mathjaxr, missMDA, psych, reshape2, Rdpack, stats, tibble, vegan" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - }, - "W008": { - "source_file": "codemeta.json", - "description": "GivenName is a list instead of string: ['Dhammaprakash', 'Pandhari'] Wankhede" - } - } - }, - "assume-framework/assume": { - "url": "https://github.com/assume-framework/assume", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.5.5' does not match release version '0.6.0'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: highspy" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2025-11-12T00:00:00' is outdated compared to repository date '2026-05-21T13:35:17'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/assume-framework/assume/aaa904c603ef267aaab6872d67cd87affcb17688/README.md" - } - } - }, - "barbagroup/PetIBM": { - "url": "https://github.com/barbagroup/PetIBM", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.3' does not match release version '0.5.4'" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2017-01-25T00:00:00' is outdated compared to repository date '2026-05-21T03:09:20'" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, - "bernd-mueller/snoke": { - "url": "https://github.com/bernd-mueller/snoke", - "pitfalls": { - "P001": { - "source_file": "pom.xml", - "description": "version '1.0-SNAPSHOT' does not match release version '1.1'" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'https://spdx.org/licenses/CC-BY-NC-SA-4.0'" - }, - "P014": { - "source_file": "metadata files", - "description": "Identifier uses bare DOI instead of full URL: '10.5281/zenodo.4680086\t'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '1.1' does not match version '1.0-SNAPSHOT' in pom.xml" - } - }, - "warnings": { - "W001": { - "source_file": "pom.xml", - "description": "contains software requirements without versions: Java 8" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2021-02-19T00:00:00' is outdated compared to repository date '2026-02-06T13:12:05'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/bernd-mueller/snoke/master/LICENSE" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Java" - } - } - }, - "bioconductor-source/treeio": { - "url": "https://github.com/bioconductor-source/treeio", - "pitfalls": { - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/bioconductor-source/treeio" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '1.3.12' does not match version '1.29.1' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: ape, ape, dplyr, dplyr, jsonlite, jsonlite, magrittr, magrittr, methods, methods, rvcheck, tibble, tibble, rlang, stats, utils" - }, - "W004": { - "source_file": "", - "description": "Programming languages in metadata do not have version specifications" - } - } - }, - "brmanuel/calliope": { - "url": "https://github.com/brmanuel/calliope", - "pitfalls": { - "P009": { - "source_file": "setup.py", - "description": "codeRepository points to homepage instead of repository: https://www.callio.pe/" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/brmanuel/calliope" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2018-06-04T00:00:00' is outdated compared to repository date '2022-11-23T01:55:35'" - } - } - }, - "c-torre/replication-recanatesi-2015": { - "url": "https://github.com/c-torre/replication-recanatesi-2015", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: Parabola GNU/Linux-libre-5.7.10 x86_64 (local), CentOS GNU/Linux 7.8.2003 (cluster), Python 3.7.7" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/c-torre/replication-recanatesi-2015/full-replication/LICENSE" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python 3" - }, - "W005": { - "source_file": "codemeta.json", - "description": "Multiple requirements written as single string: 'Parabola GNU/Linux-libre-5.7.10 x86_64 (local)'" - } - } - }, - "caltechlibrary/admin-shell-scripts": { - "url": "https://github.com/caltechlibrary/admin-shell-scripts", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: bash, make, pandoc, mysql, makepasswd, jq" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2022-10-19T00:00:00' is outdated compared to repository date '2025-08-06T22:10:12'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Bash, Make" - } - } - }, - "capstone-insper/drone-swarm-search": { - "url": "https://github.com/capstone-insper/drone-swarm-search", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.0.3' does not match release version '0.2.6'" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: wheel, h5py, xarray, python-dotenv" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-04-25T00:00:00' is outdated compared to repository date '2026-05-15T17:16:03'" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, - "caseyyoungflesh/MCMCvis": { - "url": "https://github.com/caseyyoungflesh/MCMCvis", - "pitfalls": { - "P001": { - "source_file": "DESCRIPTION", - "description": "version '0.16.5' does not match release version '0.16.3'" - }, - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: coda, rstan, methods, overlapping, colorspace" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/caseyyoungflesh/MCMCvis/3c7b05282dbe3b509f2a101e0ac5fd397c283cfa/LICENSE.md" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'MCMCvis'" - } - } - }, - "cristal-smac/ipd": { - "url": "https://github.com/cristal-smac/ipd", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: Python 3" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-12-14T00:00:00' is outdated compared to repository date '2026-03-13T13:29:03'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/cristal-smac/ipd/40c86c7f7ad51599ed402ab03bbfad398d4cce61/README.md" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python" - } - } - }, - "damiendevienne/phylter": { - "url": "https://github.com/damiendevienne/phylter", - "pitfalls": { - "P013": { - "source_file": "DESCRIPTION", - "description": "License does not specify version: 'GPL (>= 2)'" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: ape, ggplot2, reshape2, Rfast, RSpectra, stats, utils" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - }, - "W009": { - "source_file": "metadata files", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, - "dbbs-lab/bsb": { - "url": "https://github.com/dbbs-lab/bsb", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: Python (version 3.10+), setuptools" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2026-04-16T00:00:00' is outdated compared to repository date '2026-05-05T18:14:57'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/dbbs-lab/bsb/main/LICENSE" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python" - } - } - }, - "dynamicslab/pysindy": { - "url": "https://github.com/dynamicslab/pysindy", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.2.3' does not match release version '2.1.0'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: scipy, typing_extensions, setuptools, setuptools-scm" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2021-10-21T00:00:00' is outdated compared to repository date '2026-05-21T17:35:55'" - } - } - }, - "electronicvisions/releases-ebrains": { - "url": "https://github.com/electronicvisions/releases-ebrains", - "pitfalls": { - "P014": { - "source_file": "metadata files", - "description": "Identifier uses bare DOI instead of full URL: '10.5281/ZENODO.8375522'" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: cf. EBRAINS Software Distribution: `spack spec pynn-brainscales hxtorch jaxsnn`" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2026-02-19T00:00:00' is outdated compared to repository date '2026-05-05T13:41:45'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++, Python 3, C, SystemVerilog" - }, - "W005": { - "source_file": "codemeta.json", - "description": "Multiple requirements written as single string: 'cf. EBRAINS Software Distribution: `spack spec pynn-brainscales hxtorch jaxsnn`'" - } - } - }, - "felixsc1/COSplay": { - "url": "https://github.com/felixsc1/COSplay", - "pitfalls": { - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'BSD'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/felixsc1/COSplay" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2018-02-16T00:00:00' is outdated compared to repository date '2018-03-14T08:58:19'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/felixsc1/COSplay/9a10c3f55b1f80c916d55acb3110402cdfda6fa5/LICENSE" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, - "fhdsl/conrad": { - "url": "https://github.com/fhdsl/conrad", - "pitfalls": { - "P017": { - "source_file": "codemeta.json", - "description": "version '1.0.0' does not match version '1.0.0.9000' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: httr2, jsonlite, magrittr" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - } - } - }, - "fran2410/AI-Open-Science": { - "url": "https://github.com/fran2410/AI-Open-Science", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: Run the following command in the root of the repository to install dependencies:\n```bash\npoetry install\n```, Run the following command in the root of the repository to install dependencies:\n```bash\npoetry install\n```, mkdocs-material" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2025-02-26T00:00:00' is outdated compared to repository date '2025-02-28T11:09:54'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python, Dockerfile" - } - } - }, - "gavinsimpson/data.adapt.multi.test": { - "url": "https://github.com/gavinsimpson/data.adapt.multi.test", - "pitfalls": { - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/gavinsimpson/data.adapt.multi.test" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version 'v0.2.0' does not match version '0.2.0' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: tmle, foreach, parallel, doParallel, SuperLearner, calibrate, magrittr, R2HTML" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-11-21T00:00:00' is outdated compared to repository date '2017-03-20T21:45:15'" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, - "gemini3d/gemini3d": { - "url": "https://github.com/gemini3d/gemini3d", - "pitfalls": { - "P014": { - "source_file": "metadata files", - "description": "Identifier uses bare DOI instead of full URL: '10.5281/zenodo.3813224'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/gemini3d/gemini3d" - } - }, - "warnings": { - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Fortran, Python" - } - } - }, - "geospace-code/pymap3d": { - "url": "https://github.com/geospace-code/pymap3d", - "pitfalls": { - "P014": { - "source_file": "metadata files", - "description": "Identifier uses bare DOI instead of full URL: '10.21105/joss.00580'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python" - } - } - }, - "grycap/im-client": { - "url": "https://github.com/grycap/im-client", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.8.4' does not match release version '1.8.3'" - }, - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P015": { - "source_file": "metadata files", - "description": "Continuous integration URL returns unknown: https://jenkins.i3m.upv.es/job/grycap/job/im-client-unit-master/" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: radl, netaddr, requests" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/grycap/im-client/2e9f20e0a1326a63998b2c181042f5315515b98d/LICENSE" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python 3, Python 3.6, Python 3.7, Python 3.8, Python 3.9" - } - } - }, - "iljah/hdintegrator": { - "url": "https://github.com/iljah/hdintegrator", - "pitfalls": {}, - "warnings": { - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/iljah/hdintegrator/f2ab7fb246ef88a79789e492d1f40d3a07b602d9/LICENSE" - } - } - }, - "instatdealii/idealii": { - "url": "https://github.com/instatdealii/idealii", - "pitfalls": { - "P008": { - "source_file": "codemeta.json", - "description": "Software requirements contain invalid URLs: www.github.com/dealii/dealii" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: www.github.com/dealii/dealii," - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-08-15T00:00:00' is outdated compared to repository date '2025-10-13T13:52:44'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++, CMake, Hack" - } - } - }, - "jonas-ellert/linear-time-runs": { - "url": "https://github.com/jonas-ellert/linear-time-runs", - "pitfalls": {}, - "warnings": { - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++" - } - } - }, - "jvegreg/ESMValCore": { - "url": "https://github.com/jvegreg/ESMValCore", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P009": { - "source_file": "setup.py", - "description": "codeRepository points to homepage instead of repository: https://www.esmvaltool.org" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel, fiona, pandas, autodocsumm, dask[array], esgf-pyclient, humanfriendly, importlib_resources, isodate, jinja2, netCDF4, numpy, pillow, prov, pybtex, pyyaml, scipy, shapely[vectorized], yamale" - } - } - }, - "khinsen/MMTK": { - "url": "https://github.com/khinsen/MMTK", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '2.7.13' does not match release version 'rel2.7.13'" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: https://numpy.org/, https://github.com/khinsen/ScientificPython/" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-02-17T00:00:00' is outdated compared to repository date '2025-12-09T04:15:15'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/khinsen/MMTK/84547c238580201fe21bf3f227be7c02a1a2b9bc/README" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python 2" - } - } - }, - "lecfab/rescience-gorder": { - "url": "https://github.com/lecfab/rescience-gorder", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: CLI11 1.9.1, GNU Make 4.2.1, plotly.js v1.58.4, Python 3.8.5, matplotlib, numpy, linux-perf" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++, Python 3, Bash" - }, - "W005": { - "source_file": "codemeta.json", - "description": "Multiple requirements written as single string: 'GNU Make 4.2.1'" - } - } - }, - "m-team-kit/cookiecutter-web": { - "url": "https://github.com/m-team-kit/cookiecutter-web", - "pitfalls": { - "P001": { - "source_file": "package.json", - "description": "version '0.1.0' does not match release version '1.2.0'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/m-team-kit/cookiecutter-web" - } - }, - "warnings": { - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Javascript, Python" - } - } - }, - "matthiasprobst/h5RDMtoolbox": { - "url": "https://github.com/matthiasprobst/h5RDMtoolbox", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '2.7.4' does not match release version '2.7.3'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python 3, Python 3.9, Python 3.10, Python 3.11, Python 3.12, Python 3.13" - } - } - }, - "matthiasprobst/pivmetalib": { - "url": "https://github.com/matthiasprobst/pivmetalib", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/matthiasprobst/pivmetalib/a8d2fafb200cb3663f77c21bf768b94c87a2618c/README.md" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python 3, Python 3.9, Python 3.10, Python 3.11, Python 3.12, Python 3.13" - } - } - }, - "mdstephenserdc/network_representativeness": { - "url": "https://github.com/mdstephenserdc/network_representativeness", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/mdstephenserdc/network_representativeness/a0f9fc12d1bf44811423b1fc212c0b6d398b677c/LICENSE" - } - } - }, - "megasanjay/testrepository": { - "url": "https://github.com/megasanjay/testrepository", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P011": { - "source_file": "metadata files", - "description": "IssueTracker URL violates expected format: https://github.com/fairdataihub/testrepo/issues" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/megasanjay/testrepository" - } - }, - "warnings": { - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Ada, C++" - } - } - }, - "mia-jinns/jinns": { - "url": "https://github.com/mia-jinns/jinns", - "pitfalls": { - "P011": { - "source_file": "metadata files", - "description": "IssueTracker URL violates expected format: https://gitlab.com/mia_jinns/jinns/-/issues" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/mia-jinns/jinns" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: matplotlib, jaxtyping, setuptools, setuptools-scm, Python 3.11+" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-10-08T00:00:00' is outdated compared to repository date '2026-05-13T11:45:57'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python3" - } - } - }, - "mikldk/mitolina": { - "url": "https://github.com/mikldk/mitolina", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'GPL v2.0'" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: methods" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2019-02-18T00:00:00' is outdated compared to repository date '2022-01-19T12:39:43'" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, - "ms609/Quartet": { - "url": "https://github.com/ms609/Quartet", - "pitfalls": { - "P013": { - "source_file": "DESCRIPTION", - "description": "License does not specify version: 'GPL (>= 2)'" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: ape, lifecycle, PlotTools, viridisLite" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'Quartet'" - } - } - }, - "ms609/TreeDist": { - "url": "https://github.com/ms609/TreeDist", - "pitfalls": { - "P001": { - "source_file": "DESCRIPTION", - "description": "version '2.14.0.9000' does not match release version '2.14.0'" - }, - "P013": { - "source_file": "DESCRIPTION", - "description": "License does not specify version: 'GPL (>= 3)'" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: stats, colorspace, shiny, shinyjs" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'TreeDist'" - } - } - }, - "ms609/TreeSearch": { - "url": "https://github.com/ms609/TreeSearch", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.8.0.9000' does not match release version '1.7.0'" - }, - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P013": { - "source_file": "DESCRIPTION", - "description": "License does not specify version: 'GPL (>= 3)'" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: abind, base64enc, cluster, colorspace, fastmap, fs, future, PlotTools, promises, protoclust, Rcpp, shinyjs, stats, stringi" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/ms609/TreeSearch/d4af0fba212c8490e2c0250d3872f4b9e0d630c2/LICENSE" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'TreeSearch'" - } - } - }, - "munich-quantum-toolkit/core": { - "url": "https://github.com/munich-quantum-toolkit/core", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '3.0.0' does not match release version '3.6.1'" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-11-07T00:00:00' is outdated compared to repository date '2026-05-21T12:30:23'" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, - "naaci/watermarking": { - "url": "https://github.com/naaci/watermarking", - "pitfalls": { - "P001": { - "source_file": "pyproject.toml", - "description": "version '0.1.0' does not match release version 'test'" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: numpy, scipy, scipy, pywavelets" - } - } - }, - "nazar-mykolyshyn/TikTok-Api": { - "url": "https://github.com/nazar-mykolyshyn/TikTok-Api", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: requests, playwright, selenium_stealth, selenium" - } - } - }, - "neuronsimulator/nrn": { - "url": "https://github.com/neuronsimulator/nrn", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: find-libpython, setuptools, Bison, Flex, C/C++ compiler" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2025-11-17T00:00:00' is outdated compared to repository date '2026-05-21T15:25:21'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++, Python 3" - } - } - }, - "peterpolidoro/kicad_bom": { - "url": "https://github.com/peterpolidoro/kicad_bom", - "pitfalls": { - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/peterpolidoro/kicad_bom" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: setuptools" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-05-09T00:00:00' is outdated compared to repository date '2024-08-27T20:25:24'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python 3" - } - } - }, - "peterpolidoro/kicad_netlist_reader": { - "url": "https://github.com/peterpolidoro/kicad_netlist_reader", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/peterpolidoro/kicad_netlist_reader" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: setuptools" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-03-29T00:00:00' is outdated compared to repository date '2024-12-10T20:08:57'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/peterpolidoro/kicad_netlist_reader/1b2108e0a8da04acdb595c724f3272a73f1ab755/LICENSE" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python 3" - } - } - }, - "phreppo/bait": { - "url": "https://github.com/phreppo/bait", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/phreppo/bait" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2021-04-26T00:00:00' is outdated compared to repository date '2022-05-17T04:25:30'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/phreppo/bait/master/LICENSE" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Java" - } - } - }, - "proycon/colibri-core": { - "url": "https://github.com/proycon/colibri-core", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel, Cython" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/proycon/colibri-core/master/LICENSE" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++, Cython" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'colibricore'" - }, - "W009": { - "source_file": "metadata files", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, - "r-spatialecology/landscapemetrics": { - "url": "https://github.com/r-spatialecology/landscapemetrics", - "pitfalls": { - "P001": { - "source_file": "DESCRIPTION", - "description": "version '2.2.2' does not match release version '2.2.1'" - }, - "P009": { - "source_file": "codemeta.json", - "description": "codeRepository points to homepage instead of repository: https://r-spatialecology.github.io/landscapemetrics/" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/r-spatialecology/landscapemetrics" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: cli, ggplot2, methods, stats, terra, tibble" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/r-spatialecology/landscapemetrics/9e777a5c5ec568ebca8f5ddec7bed1c2d465a357/LICENSE.md" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'landscapemetrics'" - } - } - }, - "rOpenGov/r311": { - "url": "https://github.com/rOpenGov/r311", - "pitfalls": { - "P017": { - "source_file": "codemeta.json", - "description": "version '0.4.3' does not match version '0.4.4' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: curl, jsonlite, tools, utils" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - } - } - }, - "rcsb/py-rcsbsearchapi": { - "url": "https://github.com/rcsb/py-rcsbsearchapi", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: tqdm" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/rcsb/py-rcsbsearchapi/master/README.md" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python 3" - } - } - }, - "riatelab/tanaka": { - "url": "https://github.com/riatelab/tanaka", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.4.0' does not match release version '0.3.0'" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: terra, sf, mapiso, maplegend, grDevices, graphics" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - } - } - }, - "rism-digital/verovio": { - "url": "https://github.com/rism-digital/verovio", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '6.3.0-dev' does not match release version 'ersion-6.2.0'" - }, - "P003": { - "source_file": "package.json", - "description": "Multiple authors found in single field: 'Laurent Pugin and others'" - }, - "P009": { - "source_file": "setup.py", - "description": "codeRepository points to homepage instead of repository: https://www.verovio.org" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '6.3.0-dev' does not match version '0.1.0' in pyproject.toml" - } - }, - "warnings": { - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++, Python, JavaScript, Java" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'Verovio'" - } - } - }, - "ropensci/CoordinateCleaner": { - "url": "https://github.com/ropensci/CoordinateCleaner", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '2.0.20' does not match release version '2.0-4'" - }, - "P008": { - "source_file": "codemeta.json", - "description": "Software requirements contain invalid URLs: https://sysreqs.r-hub.io/get/gdal" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '2.0.20' does not match version '3.0.1' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: dplyr, dplyr, geosphere, geosphere, ggplot2, ggplot2, graphics, graphics, grDevices, grDevices, methods, methods, raster, rgbif, rgbif, rgeos, rgdal, rnaturalearth, stats, stats, sp, tidyselect, tidyselect, utils, utils, https://sysreqs.r-hub.io/get/gdal, https://sysreqs.r-hub.io/get/libgdal, terra" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'CoordinateCleaner'" - }, - "W009": { - "source_file": "metadata files", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, - "ropensci/USAboundariesData": { - "url": "https://github.com/ropensci/USAboundariesData", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.5.0' does not match release version '0.5.1'" - }, - "P003": { - "source_file": "DESCRIPTION", - "description": "Multiple authors found in single field: 'Dr. William M. Scholl Center for American History and Culture,\n The Newberry Library'" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'https://spdx.org/licenses/CC-BY-NC-SA-4.0'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.5.0' does not match version '0.5.1' in DESCRIPTION" - } - }, - "warnings": { - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - } - } - }, - "ropensci/geojson": { - "url": "https://github.com/ropensci/geojson", - "pitfalls": { - "P010": { - "source_file": "LICENSE", - "description": "file only contains copyright information without actual license terms" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.3.4' does not match version '0.3.5.9000' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: methods, methods, sp, sp, magrittr, magrittr, lazyeval, lazyeval" - } - } - }, - "ropensci/tradestatistics": { - "url": "https://github.com/ropensci/tradestatistics", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P009": { - "source_file": "codemeta.json", - "description": "codeRepository points to homepage instead of repository: https://docs.ropensci.org/tradestatistics/" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/ropensci/tradestatistics" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '4.4.0' does not match version '5.0.0' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: crul, data.table, digest, jsonlite, memoise, utils" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - } - } - }, - "sep-developers/sep": { - "url": "https://github.com/sep-developers/sep", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.0.0' does not match release version '1.4.1'" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'LGPL v3.0'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/sep-developers/sep" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel, Cython" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-09-30T00:00:00' is outdated compared to repository date '2026-05-01T12:59:54'" - } - } - }, - "sillyplots/spotifyr": { - "url": "https://github.com/sillyplots/spotifyr", - "pitfalls": { - "P010": { - "source_file": "LICENSE", - "description": "file only contains copyright information without actual license terms" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/sillyplots/spotifyr" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: dplyr, purrr, httr, lubridate, jsonlite, readr, rvest, stringr, tibble, janitor, rlang, magrittr, assertthat, xml2" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'spotifyr'" - } - } - }, - "sje30/rescience-hor": { - "url": "https://github.com/sje30/rescience-hor", - "pitfalls": {}, - "warnings": { - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - } - } - }, - "sorokinvld/LLFn": { - "url": "https://github.com/sorokinvld/LLFn", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: poetry-core" - } - } - }, - "sourmash-bio/sourmash": { - "url": "https://github.com/sourmash-bio/sourmash", - "pitfalls": { - "P001": { - "source_file": "pyproject.toml", - "description": "version '4.9.5-dev' does not match release version '4.9.4'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version 'v1.0.0' does not match version '4.9.5-dev' in pyproject.toml" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: -e .[all], numpy, matplotlib, scipy, cffi" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-06-07T00:00:00' is outdated compared to repository date '2026-05-18T20:38:45'" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, - "sscu-budapest/lead-contamination-hungary": { - "url": "https://github.com/sscu-budapest/lead-contamination-hungary", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: datazimmer" - } - } - }, - "sthanhe/ParticleDispersion": { - "url": "https://github.com/sthanhe/ParticleDispersion", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/sthanhe/ParticleDispersion/9eafc76b75a52846b9bf78aa8a2fd0c24c5f2b9d/LICENSE" - } - } - }, - "tesselle/kairos": { - "url": "https://github.com/tesselle/kairos", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '2.3.0' does not match release version '2.2.0'" - }, - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P009": { - "source_file": "codemeta.json", - "description": "codeRepository points to homepage instead of repository: https://codeberg.org/tesselle/kairos" - }, - "P013": { - "source_file": "DESCRIPTION", - "description": "License does not specify version: 'GPL (>= 3)'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/tesselle/kairos" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '2.3.0' does not match version '2.3.0.9000' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: extraDistr, grDevices, methods, stats, utils" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/tesselle/kairos/113e0be3cc9beb2895f0ff5ac95063aad219b536/LICENSE.md" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'kairos'" - }, - "W009": { - "source_file": "metadata files", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, - "tvwenger/bayes_spec": { - "url": "https://github.com/tvwenger/bayes_spec", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version 'unknown' does not match release version '1.8.0'" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: jupyter, ipykernel, ipywidgets, numpy, pytensor, nutpie, numba, arviz, matplotlib, scipy, scikit-learn, graphviz, jaxlib, jax, blackjax, numpyro, setuptools" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-08-15T00:00:00' is outdated compared to repository date '2025-10-30T14:25:24'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/tvwenger/bayes_spec/2dc53e3fc9302b8a40fcaec6384ee152c700590a/README.md" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, - "umr-amap/StormR": { - "url": "https://github.com/umr-amap/StormR", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.2.2' does not match release version '0.2.4'" - }, - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P013": { - "source_file": "DESCRIPTION", - "description": "License does not specify version: 'GPL (>= 3)'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.2.2' does not match version '0.2.1' in DESCRIPTION" - }, - "P018": { - "source_file": "metadata files", - "description": "Identifier uses raw SWHID without resolvable URL: 'swh:1:dir:aa216059c9fd003bb41938788ff4608e59a49684'" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: graphics,, maps,, methods,, ncdf4,, rworldmap,, sf,, stringr,, terra,, utils,, zoo, zoo, graphics, leaflet, maps, methods, ncdf4, rworldmap, sf, stringr, terra, utils" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-09-04T00:00:00' is outdated compared to repository date '2026-04-09T09:51:19'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/umr-amap/StormR/0f179f94caac8ee075473472cb0474f54e745947/LICENSE.md" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - } - } - }, - "underworldcode/underworld2": { - "url": "https://github.com/underworldcode/underworld2", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.0.0' does not match release version '2.16.4'" - }, - "P006": { - "source_file": "pyproject.toml", - "description": "License points to local file instead of license name: 'License file: ./LICENSE.md'" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'GPL v3.0'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/underworldcode/underworld2" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: ., mpi4py, h5py, pint, scipy, setuptools, ninja" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2018-12-07T00:00:00' is outdated compared to repository date '2026-05-18T01:16:41'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/underworldcode/underworld2/a017a16c73c7c8bbb2869ceb05080c5c5098ac8e/LICENSE.md" - } - } - }, - "vc1492a/PyNomaly": { - "url": "https://github.com/vc1492a/PyNomaly", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.2.0' does not match release version '0.3.5'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/vc1492a/PyNomaly" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2018-05-07T00:00:00' is outdated compared to repository date '2026-05-16T16:32:24'" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, - "viznuv/transforEmotion": { - "url": "https://github.com/viznuv/transforEmotion", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P013": { - "source_file": "DESCRIPTION", - "description": "License does not specify version: 'GPL (>= 3.0)'" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: dplyr, googledrive, LSAfun, Matrix, methods, pbapply, remotes, reticulate" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/viznuv/transforEmotion/f40dbf651f4361c2cd2dca4092e6e90b9bf4a073/LICENSE" - } - } - }, - "yt-project/unyt": { - "url": "https://github.com/yt-project/unyt", - "pitfalls": { - "P001": { - "source_file": "pyproject.toml", - "description": "version '3.1.0.dev0' does not match release version '3.1.0'" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'BSD'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version 'v1.0.7' does not match version '3.1.0.dev0' in pyproject.toml" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: numpy, sympy, matplotlib, sphinx" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2018-08-13T00:00:00' is outdated compared to repository date '2026-05-12T13:04:16'" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - } -} \ No newline at end of file diff --git a/BACKUP/ground_truth/summary_0_3_1.json b/BACKUP/ground_truth/summary_0_3_1.json deleted file mode 100644 index 1914775..0000000 --- a/BACKUP/ground_truth/summary_0_3_1.json +++ /dev/null @@ -1,2070 +0,0 @@ -{ - "AI5GW/Goertzel": { - "url": "https://github.com/AI5GW/Goertzel", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W003": { - "source_file": "README.md", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/AI5GW/Goertzel/2eb355240d0a66147309c783c91877af350414a9/README.md" - } - } - }, - "BM32ESRF/LaueNN": { - "url": "https://github.com/BM32ESRF/LaueNN", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: matplotlib, Keras, numpy, h5py, tensorflow, PyQt5, scikit-learn, fabio, networkx, scikit-image, tqdm, scipy" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-03-24T00:00:00' is outdated compared to repository date '2026-03-16T10:36:05'" - } - } - }, - "CardiacModelling/protocol-design-hERG": { - "url": "https://github.com/CardiacModelling/protocol-design-hERG", - "pitfalls": { - "P016": { - "source_file": "", - "description": "the correct URL is https://github.com/CardiacModelling/protocol-design-hERG, and the one found in codemeta.json is https://github.com/SALib/SALib" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: pints, myokit" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-10-18T00:00:00' is outdated compared to repository date '2025-07-10T09:56:55'" - } - } - }, - "ComputationalBiomechanicsLab/opensim-creator": { - "url": "https://github.com/ComputationalBiomechanicsLab/opensim-creator", - "pitfalls": { - "P001": { - "source_file": "pyproject.toml", - "description": "version '2.12.0' does not match release version '0.7.3'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.7.3' does not match version '2.12.0' in pyproject.toml" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: meson, ninja" - } - } - }, - "ComputationalGenomics/Reveal": { - "url": "https://github.com/ComputationalGenomics/Reveal", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: numpy, pandas, joblib, sphinx, sphinx-autodoc-typehints, sphinx_rtd_theme, myst_parser" - } - } - }, - "DrMattG/SDGsR": { - "url": "https://github.com/DrMattG/SDGsR", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P009": { - "source_file": "codemeta.json", - "description": "codeRepository points to homepage instead of repository: https://drmattg.github.io/SDGsR/" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: jsonlite, here, readr, dplyr, tidyr" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/DrMattG/SDGsR/fa1898e88b9a31a05c2b722f36d6993595536a12/LICENSE.md" - } - } - }, - "Duke-GCB/calrissian": { - "url": "https://github.com/Duke-GCB/calrissian", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.16.0' does not match release version '0.18.1'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: hatchling" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-10-23T00:00:00' is outdated compared to repository date '2026-02-12T01:16:54'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Python" - } - } - }, - "EDIorg/ecocomDP": { - "url": "https://github.com/EDIorg/ecocomDP", - "pitfalls": { - "P010": { - "source_file": "LICENSE", - "description": "file only contains copyright information without actual license terms" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: RColorBrewer, data.table, dplyr, geosphere, ggplot2, httr, lubridate, magrittr, methods, rlang, rmarkdown, stats, stringr, tidyr, tools, utils, uuid, xml2, neonOS" - } - } - }, - "ElektraInitiative/libelektra": { - "url": "https://github.com/ElektraInitiative/libelektra", - "pitfalls": { - "P001": { - "source_file": "codemeta.json; package.json; pom.xml", - "description": "version '0.8.17' does not match release version '0.10.0'; version '2.0.0' does not match release version '0.10.0'; version '0.0.1-SNAPSHOT' does not match release version '0.10.0'" - }, - "P006": { - "source_file": "package.json", - "description": "License points to local file instead of license name: 'SEE LICENSE IN ../../../LICENSE.md'" - }, - "P009": { - "source_file": "setup.py", - "description": "codeRepository points to homepage instead of repository: https://www.libelektra.org" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'BSD'" - }, - "P016": { - "source_file": "", - "description": "the correct URL is https://github.com/ElektraInitiative/libelektra, and the one found in codemeta.json is https://www.libelektra.org" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.8.17' does not match version '2.0.0' in package.json" - } - }, - "warnings": { - "W001": { - "source_file": "package.json", - "description": "contains software requirements without versions: wheel" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-07-23T00:00:00' is outdated compared to repository date '2026-05-11T09:01:19'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - }, - "W010": { - "source_file": "package.json", - "description": "codeRepository uses Git shorthand instead of full URL: 'github:ElektraInitiative/libelektra'" - } - } - }, - "FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization": { - "url": "https://github.com/FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: gcc, cMake, swh:1:dir:cc83fa70d755c8bae509b3c9eb56cb3a8e7a339e;origin=https://gitlab.inria.fr/paradiseo/paradiseo;visit=swh:1:snp:ab929bf560e9d1ad33143b73d38434e900f01858;anchor=swh:1:rev:c2a3ed4e7f67772afb37ea325c9ef80fca2b008d" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-11-20T00:00:00' is outdated compared to repository date '2024-06-11T13:07:36'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++" - }, - "W005": { - "source_file": "codemeta.json", - "description": "Multiple requirements written as single string: 'swh:1:dir:cc83fa70d755c8bae509b3c9eb56cb3a8e7a339e;origin=https://gitlab.inria.fr/paradiseo/paradiseo;visit=swh:1:snp:ab929bf560e9d1ad33143b73d38434e900f01858;anchor=swh:1:rev:c2a3ed4e7f67772afb37ea325c9ef80fca2b008d'" - } - } - }, - "FairRootGroup/DDS": { - "url": "https://github.com/FairRootGroup/DDS", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version 'master' does not match release version '3.17'" - } - }, - "warnings": {} - }, - "FairRootGroup/FairMQ": { - "url": "https://github.com/FairRootGroup/FairMQ", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version 'master' does not match release version '1.10.0'" - }, - "P006": { - "source_file": "codemeta.json", - "description": "License points to local file instead of license name: './COPYRIGHT'" - } - }, - "warnings": {} - }, - "HumanBrainProject/kg-core-sdks": { - "url": "https://github.com/HumanBrainProject/kg-core-sdks", - "pitfalls": { - "P017": { - "source_file": "codemeta.json", - "description": "version '0.9.20' does not match version '0.9.7' in package.json" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: requests, pydantic, jinja2" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-11-21T00:00:00' is outdated compared to repository date '2026-01-24T14:06:50'" - } - } - }, - "IBM/multi-variate-parallel-transformer": { - "url": "https://github.com/IBM/multi-variate-parallel-transformer", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: mgzip, pathtools, antlr4-python3-runtime, wheel, typing-extensions, maturin, hjson, ninja, msgpack, py-cpuinfo" - } - } - }, - "JSadowska/testLille": { - "url": "https://github.com/JSadowska/testLille", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Python" - } - } - }, - "Kaffeegangster/tclf": { - "url": "https://github.com/Kaffeegangster/tclf", - "pitfalls": { - "P006": { - "source_file": "pyproject.toml", - "description": "License points to local file instead of license name: 'License file: LICENSE.txt'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: numpy, pandas, scikit-learn" - } - } - }, - "KonradHoeffner/rickview": { - "url": "https://github.com/KonradHoeffner/rickview", - "pitfalls": { - "P014": { - "source_file": "codemeta.json", - "description": "Identifier uses bare DOI instead of full URL: '10.5281/zenodo.8290117'" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Rust" - } - } - }, - "LDEO-CREW/Pythonic-DISORT": { - "url": "https://github.com/LDEO-CREW/Pythonic-DISORT", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: numpy, scipy, ipython, matplotlib, sphinx, nbsphinx, python_docs_theme" - } - } - }, - "LanguageMachines/foliautils": { - "url": "https://github.com/LanguageMachines/foliautils", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: icu, libxml2, ticcutils, libfolia" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'foliautils'" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, - "LanguageMachines/frog": { - "url": "https://github.com/LanguageMachines/frog", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: icu, libxml2, ticcutils, timbl, libfolia, mbt, ucto" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-12-05T00:00:00' is outdated compared to repository date '2026-05-07T10:29:51'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/LanguageMachines/frog/53da3bfd9958af5e7221348607f6db358edef486/README" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'frog'" - } - } - }, - "LanguageMachines/ucto": { - "url": "https://github.com/LanguageMachines/ucto", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: icu, libxml2, ticcutils, libfolia" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2025-12-11T00:00:00' is outdated compared to repository date '2026-02-09T12:18:49'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'ucto'" - } - } - }, - "Mariizero/ECGRat": { - "url": "https://github.com/Mariizero/ECGRat", - "pitfalls": {}, - "warnings": {} - }, - "Miagarciaru/atlas-outreach-data-tools-for-lumi36": { - "url": "https://github.com/Miagarciaru/atlas-outreach-data-tools-for-lumi36", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: Python, ROOT" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2021-09-01T00:00:00' is outdated compared to repository date '2025-04-02T14:39:02'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++, bash" - } - } - }, - "MiguelRodo/Slides24STA5069Z": { - "url": "https://github.com/MiguelRodo/Slides24STA5069Z", - "pitfalls": { - "P001": { - "source_file": "DESCRIPTION; codemeta.json", - "description": "version '3.4.0-1' does not match release version 'slides-2025'; version '0.0.0.1' does not match release version 'slides-2025'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.0.0.1' does not match version '3.4.0-1' in DESCRIPTION" - } - }, - "warnings": {} - }, - "MolSSI/QCEngine": { - "url": "https://github.com/MolSSI/QCEngine", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.32' does not match release version '0.50.0rc1'" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Python" - } - } - }, - "Neplex/ArchiTXT": { - "url": "https://github.com/Neplex/ArchiTXT", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: benepar, benepar, langchain-core, langchain-huggingface, levenshtein, levenshtein, more-itertools, more-itertools, streamlit-agraph, streamlit-tags, typing-extensions, typing-extensions, unidecode, unidecode" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Python" - }, - "W005": { - "source_file": "codemeta.json", - "description": "Multiple requirements written as single string: 'aiostream==>=0.7,<0.8'" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'ArchiTXT'" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#wip" - } - } - }, - "Neplex/COveR": { - "url": "https://github.com/Neplex/COveR", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2017-12-06T00:00:00' is outdated compared to repository date '2026-05-21T08:49:11'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C, R" - } - } - }, - "NeuralEnsemble/PyNN": { - "url": "https://github.com/NeuralEnsemble/PyNN", - "pitfalls": { - "P001": { - "source_file": "codemeta.json; pyproject.toml", - "description": "version '0.12.4' does not match release version '0.12.1'; version '0.12.4' does not match release version '0.12.1'" - }, - "P012": { - "source_file": "codemeta.json", - "description": "downloadURL is outdated or invalid: https://files.pythonhosted.org/packages/f2/04/371f66ed8175e41a3d5ee04d957f6253e378cc4616b485e4c6a1b9f27626/pynn-0.12.4.tar.gz" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: at least one of the supported simulators: e.g. NEURON, NEST, or Brian., morphio, setuptools" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2025-04-02T00:00:00' is outdated compared to repository date '2026-05-06T09:40:39'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Python" - }, - "W005": { - "source_file": "codemeta.json", - "description": "Multiple requirements written as single string: 'at least one of the supported simulators: e.g. NEURON, NEST, or Brian.'" - } - } - }, - "PRIDE-Archive/pridepy": { - "url": "https://github.com/PRIDE-Archive/pridepy", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: ratelimit, click, pytest, setuptools, boto3, botocore, tqdm, urllib3, httpx, requests" - } - } - }, - "Pakillo/grateful": { - "url": "https://github.com/Pakillo/grateful", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: desc, knitr, remotes, renv, rmarkdown, rstudioapi, utils" - } - } - }, - "ParaStation/psmpi": { - "url": "https://github.com/ParaStation/psmpi", - "pitfalls": { - "P017": { - "source_file": "codemeta.json", - "description": "version '2.8.0' does not match version '1.0.0' in package.json" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: pytest, pytest-xdist, pytest-html, pyyaml, retrying, junitparser" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2022-07-05T00:00:00' is outdated compared to repository date '2026-04-28T16:13:04'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C" - } - } - }, - "R3BRootGroup/sofia": { - "url": "https://github.com/R3BRootGroup/sofia", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version 'sep25' does not match release version 'dec25'" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: FairRoot, FairSoft, R3BRoot" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2025-09-15T00:00:00' is outdated compared to repository date '2025-12-31T17:53:21'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++, C" - }, - "W005": { - "source_file": "codemeta.json", - "description": "Multiple requirements written as single string: 'FairRoot, FairSoft, R3BRoot'" - } - } - }, - "Rbfinch/grepq": { - "url": "https://github.com/Rbfinch/grepq", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.4.1' does not match release version 'grepq-v1.6.5'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version 'v1.4.1' does not match version '1.6.5' in Cargo.toml" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2025-01-17T00:00:00' is outdated compared to repository date '2026-04-28T08:34:01'" - } - } - }, - "SeUniVr/PLC-RE": { - "url": "https://github.com/SeUniVr/PLC-RE", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: pandas, ray, json, modbus_tk, logging, itertools, scipy, glob2, numpy, matplotlib" - } - } - }, - "SedFoam/sedfoam": { - "url": "https://github.com/SedFoam/sedfoam", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: OpenFoam (ESI version)" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2022-07-08T00:00:00' is outdated compared to repository date '2026-05-14T07:21:25'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++, OpenFoam" - } - } - }, - "Simple-Robotics/proxsuite": { - "url": "https://github.com/Simple-Robotics/proxsuite", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: numpy, scipy, cmeel[build], cmeel-eigen, cmeel-simde, typing-extensions" - } - } - }, - "Unknown": { - "url": "https://gricad-gitlab.univ-grenoble-alpes.fr/bidegarb/nautil", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: Maple" - }, - "W004": { - "source_file": "", - "description": "Programming languages in metadata do not have version specifications" - } - } - }, - "aaronmck/Badread": { - "url": "https://github.com/aaronmck/Badread", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'GPL v3.0'" - }, - "P016": { - "source_file": "", - "description": "the correct URL is https://github.com/aaronmck/Badread, and the one found in codemeta.json is https://github.com/rrwick/Badread" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: edlib, numpy, matplotlib, scipy" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2019-03-01T00:00:00' is outdated compared to repository date '2021-11-20T03:09:52'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, - "ajpelu/likelihoodTools": { - "url": "https://github.com/ajpelu/likelihoodTools", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.1.0' does not match version '1.0.0' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: dplyr, ggplot2, rlang" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/ajpelu/likelihoodTools/e0d8fdb5b69d27a641ffc4731e8c2e5b6a21b67c/LICENSE.md" - } - } - }, - "amd/mumps-build": { - "url": "https://github.com/amd/mumps-build", - "pitfalls": { - "P014": { - "source_file": "codemeta.json", - "description": "Identifier uses bare DOI instead of full URL: '10.1145/3242094'" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C, Fortran" - } - } - }, - "andrew-saydjari/mfouesneau.github.com": { - "url": "https://github.com/andrew-saydjari/mfouesneau.github.com", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel" - } - } - }, - "aravind-j/EvaluateCore": { - "url": "https://github.com/aravind-j/EvaluateCore", - "pitfalls": { - "P001": { - "source_file": "codemeta.json; codemeta.json; DESCRIPTION", - "description": "version '0.1.3.9000' does not match release version 'CRAN_0.1.4'; version '0.1.3.9000' does not match release version 'CRAN_0.1.4'; version '0.1.4.9000' does not match release version 'CRAN_0.1.4'" - }, - "P009": { - "source_file": "DESCRIPTION", - "description": "codeRepository points to homepage instead of repository: https://github.com/aravind-j/EvaluateCore\n https://CRAN.R-project.org/package=EvaluateCore\n https://aravind-j.github.io/EvaluateCore/\n https://doi.org/10.5281/zenodo.3875930" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.1.3.9000' does not match version '0.1.4.9000' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: agricolae, boot, car, cluster, dplyr, entropy, ggcorrplot, ggplot2, ggtext, grDevices, gridExtra, kSamples, mathjaxr, missMDA, psych, reshape2, Rdpack, stats, tibble, vegan" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: R" - } - } - }, - "assume-framework/assume": { - "url": "https://github.com/assume-framework/assume", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.5.5' does not match release version '0.6.0'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: highspy" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2025-11-12T00:00:00' is outdated compared to repository date '2026-05-21T13:35:17'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/assume-framework/assume/aaa904c603ef267aaab6872d67cd87affcb17688/README.md" - } - } - }, - "barbagroup/PetIBM": { - "url": "https://github.com/barbagroup/PetIBM", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.3' does not match release version '0.5.4'" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2017-01-25T00:00:00' is outdated compared to repository date '2026-05-21T03:09:20'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, - "bernd-mueller/snoke": { - "url": "https://github.com/bernd-mueller/snoke", - "pitfalls": { - "P001": { - "source_file": "pom.xml", - "description": "version '1.0-SNAPSHOT' does not match release version '1.1'" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'https://spdx.org/licenses/CC-BY-NC-SA-4.0'" - }, - "P014": { - "source_file": "codemeta.json", - "description": "Identifier uses bare DOI instead of full URL: '10.5281/zenodo.4680086\t'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '1.1' does not match version '1.0-SNAPSHOT' in pom.xml" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: Java 8" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2021-02-19T00:00:00' is outdated compared to repository date '2026-02-06T13:12:05'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Java" - } - } - }, - "bioconductor-source/treeio": { - "url": "https://github.com/bioconductor-source/treeio", - "pitfalls": { - "P017": { - "source_file": "codemeta.json", - "description": "version '1.3.12' does not match version '1.29.1' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: ape, ape, dplyr, dplyr, jsonlite, jsonlite, magrittr, magrittr, methods, methods, rlang, stats, tibble, tibble, utils, rvcheck" - }, - "W004": { - "source_file": "", - "description": "Programming languages in metadata do not have version specifications" - } - } - }, - "brmanuel/calliope": { - "url": "https://github.com/brmanuel/calliope", - "pitfalls": { - "P009": { - "source_file": "setup.py", - "description": "codeRepository points to homepage instead of repository: https://www.callio.pe/" - }, - "P016": { - "source_file": "", - "description": "the correct URL is https://github.com/brmanuel/calliope, and the one found in codemeta.json is https://github.com/calliope-project/calliope" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2018-06-04T00:00:00' is outdated compared to repository date '2022-11-23T01:55:35'" - } - } - }, - "c-torre/replication-recanatesi-2015": { - "url": "https://github.com/c-torre/replication-recanatesi-2015", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W004": { - "source_file": "", - "description": "Programming languages in metadata do not have version specifications" - } - } - }, - "caltechlibrary/admin-shell-scripts": { - "url": "https://github.com/caltechlibrary/admin-shell-scripts", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: make, pandoc, mysql, makepasswd, jq" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2022-10-19T00:00:00' is outdated compared to repository date '2025-08-06T22:10:12'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Bash, Make" - } - } - }, - "capstone-insper/drone-swarm-search": { - "url": "https://github.com/capstone-insper/drone-swarm-search", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.0.3' does not match release version '0.2.6'" - } - }, - "warnings": { - "W001": { - "source_file": "package.json", - "description": "contains software requirements without versions: wheel, h5py, xarray, python-dotenv" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-04-25T00:00:00' is outdated compared to repository date '2026-05-15T17:16:03'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, - "caseyyoungflesh/MCMCvis": { - "url": "https://github.com/caseyyoungflesh/MCMCvis", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: coda, rstan, methods, overlapping, colorspace" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'MCMCvis'" - } - } - }, - "cristal-smac/ipd": { - "url": "https://github.com/cristal-smac/ipd", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: Python 3" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-12-14T00:00:00' is outdated compared to repository date '2026-03-13T13:29:03'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/cristal-smac/ipd/40c86c7f7ad51599ed402ab03bbfad398d4cce61/README.md" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Python" - } - } - }, - "damiendevienne/phylter": { - "url": "https://github.com/damiendevienne/phylter", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: ape, ggplot2, reshape2, Rfast, RSpectra, stats, utils" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, - "dbbs-lab/bsb": { - "url": "https://github.com/dbbs-lab/bsb", - "pitfalls": { - "P001": { - "source_file": "pyproject.toml", - "description": "version '1.0.0' does not match release version '7.3.1'" - }, - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '7.3.1' does not match version '1.0.0' in pyproject.toml" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: hatchling" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2026-04-16T00:00:00' is outdated compared to repository date '2026-05-05T18:14:57'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Python" - } - } - }, - "dynamicslab/pysindy": { - "url": "https://github.com/dynamicslab/pysindy", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.2.3' does not match release version '2.1.0'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: scipy, typing_extensions, setuptools, setuptools-scm" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2021-10-21T00:00:00' is outdated compared to repository date '2026-05-21T17:35:55'" - } - } - }, - "electronicvisions/releases-ebrains": { - "url": "https://github.com/electronicvisions/releases-ebrains", - "pitfalls": { - "P014": { - "source_file": "codemeta.json", - "description": "Identifier uses bare DOI instead of full URL: '10.5281/ZENODO.8375522'" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: cf. EBRAINS Software Distribution: `spack spec pynn-brainscales hxtorch jaxsnn`" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2026-02-19T00:00:00' is outdated compared to repository date '2026-05-05T13:41:45'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++, C, SystemVerilog" - } - } - }, - "felixsc1/COSplay": { - "url": "https://github.com/felixsc1/COSplay", - "pitfalls": { - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'BSD'" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2018-02-16T00:00:00' is outdated compared to repository date '2018-03-14T08:58:19'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, - "fhdsl/conrad": { - "url": "https://github.com/fhdsl/conrad", - "pitfalls": { - "P001": { - "source_file": "DESCRIPTION", - "description": "version '1.0.0.9000' does not match release version '1.0.0'" - }, - "P010": { - "source_file": "LICENSE", - "description": "file only contains copyright information without actual license terms" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '1.0.0' does not match version '1.0.0.9000' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: httr2, jsonlite, magrittr" - } - } - }, - "fran2410/AI-Open-Science": { - "url": "https://github.com/fran2410/AI-Open-Science", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: mkdocs-material" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2025-02-26T00:00:00' is outdated compared to repository date '2025-02-28T11:09:54'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Python, Dockerfile" - } - } - }, - "gavinsimpson/data.adapt.multi.test": { - "url": "https://github.com/gavinsimpson/data.adapt.multi.test", - "pitfalls": { - "P017": { - "source_file": "codemeta.json", - "description": "version 'v0.2.0' does not match version '0.2.0' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: tmle, foreach, parallel, doParallel, SuperLearner, calibrate, magrittr, R2HTML" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-11-21T00:00:00' is outdated compared to repository date '2017-03-20T21:45:15'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, - "gemini3d/gemini3d": { - "url": "https://github.com/gemini3d/gemini3d", - "pitfalls": { - "P014": { - "source_file": "codemeta.json", - "description": "Identifier uses bare DOI instead of full URL: '10.5281/zenodo.3813224'" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Fortran, Python" - } - } - }, - "geospace-code/pymap3d": { - "url": "https://github.com/geospace-code/pymap3d", - "pitfalls": { - "P014": { - "source_file": "codemeta.json", - "description": "Identifier uses bare DOI instead of full URL: '10.21105/joss.00580'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Python" - } - } - }, - "grycap/im-client": { - "url": "https://github.com/grycap/im-client", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P015": { - "source_file": "codemeta.json", - "description": "Continuous integration URL returns unknown: https://jenkins.i3m.upv.es/job/grycap/job/im-client-unit-master/" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: radl, netaddr, requests" - } - } - }, - "iljah/hdintegrator": { - "url": "https://github.com/iljah/hdintegrator", - "pitfalls": {}, - "warnings": {} - }, - "instatdealii/idealii": { - "url": "https://github.com/instatdealii/idealii", - "pitfalls": { - "P008": { - "source_file": "codemeta.json", - "description": "Software requirements contain invalid URLs: www.github.com/dealii/dealii" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: www.github.com/dealii/dealii" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-08-15T00:00:00' is outdated compared to repository date '2025-10-13T13:52:44'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++, CMake, Hack" - } - } - }, - "jonas-ellert/linear-time-runs": { - "url": "https://github.com/jonas-ellert/linear-time-runs", - "pitfalls": {}, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++" - } - } - }, - "jvegreg/ESMValCore": { - "url": "https://github.com/jvegreg/ESMValCore", - "pitfalls": { - "P009": { - "source_file": "setup.py", - "description": "codeRepository points to homepage instead of repository: https://www.esmvaltool.org" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: fiona, pandas, wheel, autodocsumm, dask[array], esgf-pyclient, humanfriendly, importlib_resources, isodate, jinja2, netCDF4, numpy, pillow, prov, pybtex, pyyaml, scipy, shapely[vectorized], yamale" - } - } - }, - "khinsen/MMTK": { - "url": "https://github.com/khinsen/MMTK", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '2.7.13' does not match release version 'rel2.7.13'" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: https://numpy.org/, https://github.com/khinsen/ScientificPython/" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-02-17T00:00:00' is outdated compared to repository date '2025-12-09T04:15:15'" - }, - "W004": { - "source_file": "", - "description": "Programming languages in metadata do not have version specifications" - } - } - }, - "lecfab/rescience-gorder": { - "url": "https://github.com/lecfab/rescience-gorder", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: matplotlib, numpy, linux-perf" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++, Bash" - } - } - }, - "m-team-kit/cookiecutter-web": { - "url": "https://github.com/m-team-kit/cookiecutter-web", - "pitfalls": { - "P001": { - "source_file": "package.json", - "description": "version '0.1.0' does not match release version '1.2.0'" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Javascript, Python" - } - } - }, - "matthiasprobst/h5RDMtoolbox": { - "url": "https://github.com/matthiasprobst/h5RDMtoolbox", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel" - } - } - }, - "matthiasprobst/pivmetalib": { - "url": "https://github.com/matthiasprobst/pivmetalib", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel" - } - } - }, - "mdstephenserdc/network_representativeness": { - "url": "https://github.com/mdstephenserdc/network_representativeness", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": {} - }, - "megasanjay/testrepository": { - "url": "https://github.com/megasanjay/testrepository", - "pitfalls": {}, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Ada, C++" - } - } - }, - "mia-jinns/jinns": { - "url": "https://github.com/mia-jinns/jinns", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: matplotlib, jaxtyping, setuptools, setuptools-scm" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-10-08T00:00:00' is outdated compared to repository date '2026-05-13T11:45:57'" - }, - "W004": { - "source_file": "", - "description": "Programming languages in metadata do not have version specifications" - } - } - }, - "mikldk/mitolina": { - "url": "https://github.com/mikldk/mitolina", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'GPL v2.0'" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: methods" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2019-02-18T00:00:00' is outdated compared to repository date '2022-01-19T12:39:43'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, - "ms609/Quartet": { - "url": "https://github.com/ms609/Quartet", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: ape, lifecycle, PlotTools, viridisLite" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'Quartet'" - } - } - }, - "ms609/TreeDist": { - "url": "https://github.com/ms609/TreeDist", - "pitfalls": { - "P001": { - "source_file": "codemeta.json; DESCRIPTION", - "description": "version '2.14.0.9000' does not match release version '2.14.0'; version '2.14.0.9000' does not match release version '2.14.0'" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: stats, colorspace, shiny, shinyjs" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'TreeDist'" - } - } - }, - "ms609/TreeSearch": { - "url": "https://github.com/ms609/TreeSearch", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: abind, base64enc, cluster, colorspace, fastmap, fs, future, PlotTools, promises, protoclust, Rcpp, shinyjs, stats, stringi" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'TreeSearch'" - } - } - }, - "munich-quantum-toolkit/core": { - "url": "https://github.com/munich-quantum-toolkit/core", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '3.0.0' does not match release version '3.6.1'" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-11-07T00:00:00' is outdated compared to repository date '2026-05-21T12:30:23'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, - "naaci/watermarking": { - "url": "https://github.com/naaci/watermarking", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: scipy, scipy, numpy, pywavelets" - } - } - }, - "nazar-mykolyshyn/TikTok-Api": { - "url": "https://github.com/nazar-mykolyshyn/TikTok-Api", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: requests, playwright, selenium_stealth, selenium" - } - } - }, - "neuronsimulator/nrn": { - "url": "https://github.com/neuronsimulator/nrn", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: Bison, Flex, C/C++ compiler, find-libpython, setuptools" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2025-11-17T00:00:00' is outdated compared to repository date '2026-05-21T15:25:21'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++" - } - } - }, - "peterpolidoro/kicad_bom": { - "url": "https://github.com/peterpolidoro/kicad_bom", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: setuptools" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-05-09T00:00:00' is outdated compared to repository date '2024-08-27T20:25:24'" - } - } - }, - "peterpolidoro/kicad_netlist_reader": { - "url": "https://github.com/peterpolidoro/kicad_netlist_reader", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: setuptools" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-03-29T00:00:00' is outdated compared to repository date '2024-12-10T20:08:57'" - } - } - }, - "phreppo/bait": { - "url": "https://github.com/phreppo/bait", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P016": { - "source_file": "", - "description": "the correct URL is https://github.com/phreppo/bait, and the one found in codemeta.json is git+https://github.com/parof/bait" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2021-04-26T00:00:00' is outdated compared to repository date '2022-05-17T04:25:30'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Java" - } - } - }, - "proycon/colibri-core": { - "url": "https://github.com/proycon/colibri-core", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel, Cython" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++, Cython" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'colibricore'" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, - "r-spatialecology/landscapemetrics": { - "url": "https://github.com/r-spatialecology/landscapemetrics", - "pitfalls": { - "P009": { - "source_file": "codemeta.json", - "description": "codeRepository points to homepage instead of repository: https://r-spatialecology.github.io/landscapemetrics/" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: cli, ggplot2, methods, stats, terra, tibble" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/r-spatialecology/landscapemetrics/9e777a5c5ec568ebca8f5ddec7bed1c2d465a357/LICENSE.md" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'landscapemetrics'" - } - } - }, - "rOpenGov/r311": { - "url": "https://github.com/rOpenGov/r311", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.4.3' does not match release version '0.4.4'" - }, - "P010": { - "source_file": "LICENSE", - "description": "file only contains copyright information without actual license terms" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.4.3' does not match version '0.4.4' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: curl, jsonlite, tools, utils" - } - } - }, - "rcsb/py-rcsbsearchapi": { - "url": "https://github.com/rcsb/py-rcsbsearchapi", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: tqdm" - } - } - }, - "riatelab/tanaka": { - "url": "https://github.com/riatelab/tanaka", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: terra, sf, mapiso, maplegend, grDevices, graphics" - } - } - }, - "rism-digital/verovio": { - "url": "https://github.com/rism-digital/verovio", - "pitfalls": { - "P001": { - "source_file": "pyproject.toml", - "description": "version '0.1.0' does not match release version 'ersion-6.2.0'" - }, - "P009": { - "source_file": "setup.py", - "description": "codeRepository points to homepage instead of repository: https://www.verovio.org" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '6.3.0-dev' does not match version '0.1.0' in pyproject.toml" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++, Python, JavaScript, Java" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'Verovio'" - } - } - }, - "ropensci/CoordinateCleaner": { - "url": "https://github.com/ropensci/CoordinateCleaner", - "pitfalls": { - "P001": { - "source_file": "DESCRIPTION; codemeta.json", - "description": "version '3.0.1' does not match release version '2.0-4'; version '2.0.20' does not match release version '2.0-4'" - }, - "P008": { - "source_file": "codemeta.json", - "description": "Software requirements contain invalid URLs: https://sysreqs.r-hub.io/get/gdal" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '2.0.20' does not match version '3.0.1' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: dplyr, dplyr, geosphere, geosphere, ggplot2, ggplot2, graphics, graphics, grDevices, grDevices, methods, methods, rgbif, rgbif, stats, stats, terra, tidyselect, tidyselect, utils, utils, raster, rgeos, rgdal, rnaturalearth, sp, https://sysreqs.r-hub.io/get/gdal, https://sysreqs.r-hub.io/get/libgdal" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: R" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'CoordinateCleaner'" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, - "ropensci/USAboundariesData": { - "url": "https://github.com/ropensci/USAboundariesData", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.5.0' does not match release version '0.5.1'" - }, - "P013": { - "source_file": "DESCRIPTION", - "description": "License does not specify version: 'CC BY-NC-SA 4.0'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.5.0' does not match version '0.5.1' in DESCRIPTION" - } - }, - "warnings": {} - }, - "ropensci/geojson": { - "url": "https://github.com/ropensci/geojson", - "pitfalls": { - "P010": { - "source_file": "LICENSE", - "description": "file only contains copyright information without actual license terms" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.3.4' does not match version '0.3.5.9000' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: methods, methods, sp, sp, magrittr, magrittr, lazyeval, lazyeval" - } - } - }, - "ropensci/tradestatistics": { - "url": "https://github.com/ropensci/tradestatistics", - "pitfalls": { - "P009": { - "source_file": "codemeta.json", - "description": "codeRepository points to homepage instead of repository: https://docs.ropensci.org/tradestatistics/" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '4.4.0' does not match version '5.0.0' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: crul, data.table, digest, jsonlite, memoise, utils" - } - } - }, - "sep-developers/sep": { - "url": "https://github.com/sep-developers/sep", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.0.0' does not match release version '1.4.1'" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'LGPL v3.0'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel, Cython" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-09-30T00:00:00' is outdated compared to repository date '2026-05-01T12:59:54'" - } - } - }, - "sillyplots/spotifyr": { - "url": "https://github.com/sillyplots/spotifyr", - "pitfalls": { - "P010": { - "source_file": "LICENSE", - "description": "file only contains copyright information without actual license terms" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: dplyr, purrr, httr, lubridate, jsonlite, readr, rvest, stringr, tibble, janitor, rlang, magrittr, assertthat, xml2" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'spotifyr'" - } - } - }, - "sje30/rescience-hor": { - "url": "https://github.com/sje30/rescience-hor", - "pitfalls": {}, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: R" - } - } - }, - "sorokinvld/LLFn": { - "url": "https://github.com/sorokinvld/LLFn", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: poetry-core" - } - } - }, - "sourmash-bio/sourmash": { - "url": "https://github.com/sourmash-bio/sourmash", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.0.0' does not match release version '4.9.4'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version 'v1.0.0' does not match version '4.9.5-dev' in pyproject.toml" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: numpy, matplotlib, scipy, cffi, -e .[all]" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-06-07T00:00:00' is outdated compared to repository date '2026-05-18T20:38:45'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, - "sscu-budapest/lead-contamination-hungary": { - "url": "https://github.com/sscu-budapest/lead-contamination-hungary", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: datazimmer" - } - } - }, - "sthanhe/ParticleDispersion": { - "url": "https://github.com/sthanhe/ParticleDispersion", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": {} - }, - "tesselle/kairos": { - "url": "https://github.com/tesselle/kairos", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P009": { - "source_file": "codemeta.json", - "description": "codeRepository points to homepage instead of repository: https://codeberg.org/tesselle/kairos" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '2.3.0' does not match version '2.3.0.9000' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: extraDistr, grDevices, methods, stats, utils" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/tesselle/kairos/113e0be3cc9beb2895f0ff5ac95063aad219b536/LICENSE.md" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'kairos'" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, - "tvwenger/bayes_spec": { - "url": "https://github.com/tvwenger/bayes_spec", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version 'unknown' does not match release version '1.9.0'" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: jupyter, ipykernel, ipywidgets, numpy, pytensor, nutpie, numba, matplotlib, scipy, scikit-learn, graphviz, jaxlib, jax, blackjax, numpyro, setuptools, arviz" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-08-15T00:00:00' is outdated compared to repository date '2025-10-30T14:25:24'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, - "umr-amap/StormR": { - "url": "https://github.com/umr-amap/StormR", - "pitfalls": { - "P001": { - "source_file": "DESCRIPTION; codemeta.json", - "description": "version '0.2.1' does not match release version '0.2.4'; version '0.2.2' does not match release version '0.2.4'" - }, - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.2.2' does not match version '0.2.1' in DESCRIPTION" - }, - "P018": { - "source_file": "codemeta.json", - "description": "Identifier uses raw SWHID without resolvable URL: 'swh:1:dir:aa216059c9fd003bb41938788ff4608e59a49684'" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: graphics, leaflet, maps, methods, ncdf4, rworldmap, sf, stringr, terra, utils, zoo, zoo, graphics, maps, methods, ncdf4, rworldmap, sf, stringr, terra, utils" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-09-04T00:00:00' is outdated compared to repository date '2026-04-09T09:51:19'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/umr-amap/StormR/0f179f94caac8ee075473472cb0474f54e745947/LICENSE.md" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: R" - } - } - }, - "underworldcode/underworld2": { - "url": "https://github.com/underworldcode/underworld2", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.0.0' does not match release version '2.16.4'" - }, - "P006": { - "source_file": "pyproject.toml", - "description": "License points to local file instead of license name: 'License file: ./LICENSE.md'" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'GPL v3.0'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: mpi4py, h5py, pint, scipy, setuptools, ninja, ." - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2018-12-07T00:00:00' is outdated compared to repository date '2026-05-18T01:16:41'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/underworldcode/underworld2/a017a16c73c7c8bbb2869ceb05080c5c5098ac8e/LICENSE.md" - } - } - }, - "vc1492a/PyNomaly": { - "url": "https://github.com/vc1492a/PyNomaly", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.2.0' does not match release version '0.3.5'" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2018-05-07T00:00:00' is outdated compared to repository date '2026-05-16T16:32:24'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, - "viznuv/transforEmotion": { - "url": "https://github.com/viznuv/transforEmotion", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: dplyr, googledrive, LSAfun, Matrix, methods, pbapply, remotes, reticulate" - } - } - }, - "yt-project/unyt": { - "url": "https://github.com/yt-project/unyt", - "pitfalls": { - "P001": { - "source_file": "codemeta.json; pyproject.toml", - "description": "version '1.0.7' does not match release version '3.1.0'; version '3.1.0.dev0' does not match release version '3.1.0'" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'BSD'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version 'v1.0.7' does not match version '3.1.0.dev0' in pyproject.toml" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: numpy, sympy, matplotlib, sphinx" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2018-08-13T00:00:00' is outdated compared to repository date '2026-05-12T13:04:16'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - } -} \ No newline at end of file diff --git a/BACKUP/ground_truth/summary_pitfalls_warnings.json b/BACKUP/ground_truth/summary_pitfalls_warnings.json deleted file mode 100644 index be9f631..0000000 --- a/BACKUP/ground_truth/summary_pitfalls_warnings.json +++ /dev/null @@ -1,2072 +0,0 @@ -{ - "repo_1": { - "url": "https://github.com/ComputationalGenomics/Reveal", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "245b109d77370eec2eb7c4dce0370638887aa7c6" - }, - "repo_2": { - "url": "https://github.com/damiendevienne/phylter", - "warnings": { - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "4d74241169be3882da9d5f08da47bd40604764eb" - }, - "repo_3": { - "url": "https://github.com/gavinsimpson/data.adapt.multi.test", - "pitfalls": { - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository does not point to the same repository" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W007": { - "source_file": "codemeta.json", - "description": "Identifier is empty" - } - }, - "commit ID": "b33e222ddb9e05da62afb0bbfd88bd8a3567ac89" - }, - "repo_4": { - "url": "https://github.com/FairRootGroup/FairMQ", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "Version does not correspond to the version used in the latest release" - }, - "P006": { - "source_file": "codemeta.json", - "description": "License pointing to a local file instead of stating the name. For example: \u201clicense\u201d: LICENSE.MD" - } - }, - "warnings": {}, - "commit ID": "fa64faf3f755e9b00e0af738826718bf5117c8ea" - }, - "repo_5": { - "url": "https://github.com/neuronsimulator/nrn", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "aba5057b527587f1ca9a43b772edf47346d41e5a" - }, - "repo_6": { - "url": "https://github.com/gabrielblain/CropWaterBalance", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "Version does not correspond to the version used in the latest release" - }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "6b6a27d027b3508b62aff062cb8fd66f3942951e" - }, - "repo_7": { - "url": "https://github.com/instatdealii/idealii", - "pitfalls": { - "P008": { - "source_file": "codemeta.json", - "description": "softwareRequirement points to an invalid page" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "8f6d66b22dfcf276cce0eb275f46fdb2f6c5d59e" - }, - "repo_8": { - "url": "https://github.com/sillyplots/spotifyr", - "pitfalls": { - "P010": { - "source_file": "LICENSE", - "description": "The file does not have any specific license except for copyright" - } - }, - "warnings": { - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - } - }, - "commit ID": "68bc0ae54ee5f727b9ff6b70483f9b4b1fddaf3e" - }, - "repo_9": { - "url": "https://github.com/Materials-Data-Science-and-Informatics/dirschema", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "297c914fa277e2c720ae08a758707ef8ebe51ef6" - }, - "repo_11": { - "url": "https://github.com/gemini3d/gemini3d", - "pitfalls": { - "P014": { - "source_file": "codemeta.json", - "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "ee89832c620c05101751759f3fbaf1ba9e7d7b74" - }, - "repo_12": { - "url": "https://github.com/Sprinterzzj/ggstatsplot", - "pitfalls": { - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "150a4bd2bb66bd1bdbe19eadec3bb6a6f00c66b7" - }, - "repo_13": { - "url": "https://github.com/bioconductor-source/treeio", - "pitfalls": { - "P017": { - "source_file": "codemeta.json & DESCRIPTION", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "df013a97e144086980317527de6fab39dc54e9fa" - }, - "repo_14": { - "url": "https://github.com/Kaffeegangster/tclf", - "pitfalls": { - "P006": { - "source_file": "pyproject.toml", - "description": "License pointing to a local file instead of stating the name. For example: \u201clicense\u201d: LICENSE.MD" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "d44b74f990c3e2d03d9a3ced3a89ffa619b59d63" - }, - "repo_15": { - "url": "https://github.com/BM32ESRF/LaueNN", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "9033ffbf5c5257b0e22289bf6fb175dc678e1c84" - }, - "repo_16": { - "url": "https://github.com/Ruitao-Terry/GA-cal", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "commit ID": "62f5b3a8bcd3ae2e3c3e639bd6ad856d2b001d04" - }, - "repo_17": { - "url": "https://github.com/LanguageMachines/ucto", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - } - }, - "commit ID": "a57692225c4693a4229f7cd74f39465aaa96b4a7" - }, - "repo_18": { - "url": "https://github.com/eebrown/workloopR", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository does not point to the same repository" - } - }, - "warnings": { - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "51ca63341023a996fecaa6057109aa8c16029b51" - }, - "repo_19": { - "url": "https://gricad-gitlab.univ-grenoble-alpes.fr/bidegarb/nautil/", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "5d60f004a965a016cf40cca42cc696e33296969a" - }, - "repo_20": { - "url": "https://github.com/lecfab/rescience-gorder", - "pitfalls": {}, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "305d28dc1584b152ff981ee81be0de12598b402e" - }, - "repo_21": { - "url": "https://github.com/arthurcuri/flixfinder-tis1", - "pitfalls": {}, - "commit ID": "8771f700fd168e2e6c16a4f85b6631ca6b9c569f" - }, - "repo_22": { - "url": "https://github.com/ComputationalBiomechanicsLab/opensim-creator", - "pitfalls": { - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "824222911d158f0ffc6929605f8a925ff08fcf64" - }, - "repo_23": { - "url": "https://github.com/nazar-mykolyshyn/TikTok-Api", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "3973da62a683b34548d07acb48e334ac5b4cfe6d" - }, - "repo_25": { - "url": "https://github.com/peterpolidoro/kicad_netlist_reader", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "SoftwareRequirement don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "1b2108e0a8da04acdb595c724f3272a73f1ab755" - }, - "repo_26": { - "url": "https://github.com/ropensci/geojson", - "pitfalls": { - "P001": { - "source_file": "DESCRIPTION", - "description": "Version does not correspond to the version used in the latest release" - }, - "P010": { - "source_file": "LICENSE", - "description": "The file does not have any specific license except for copyright" - }, - "P017": { - "source_file": "codemeta.json, DESCRIPTION", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "3881c7df07e924b3afce2270b78e316e5e47e79d" - }, - "repo_27": { - "url": "https://github.com/Neplex/ArchiTXT", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "e82e532453dff78fe5ea2475774be167521c0fca" - }, - "repo_28": { - "url": "https://github.com/NeuralEnsemble/PyNN", - "pitfalls": { - "P001": { - "source_file": "codemeta", - "description": "Version does not correspond to the version used in the latest release" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml ", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "5a53a5144e5c8c739a0ad65435cea23579574a19" - }, - "repo_29": { - "url": "https://github.com/Rbfinch/grepq", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "Version does not correspond to the version used in the latest release" - }, - "P017": { - "source_file": "codemeta.json, Cargo.toml", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W002": { - "source_file": "codemeta.json, ", - "description": "dateModified is outdated" - } - }, - "commit ID": "3251219d23b1242a562a593f4e9f2f98ce797fad" - }, - "repo_30": { - "url": "https://github.com/ms609/TreeSearch", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "Version does not correspond to the version used in the latest release" - }, - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - } - }, - "commit ID": "d4af0fba212c8490e2c0250d3872f4b9e0d630c2" - }, - "repo_31": { - "url": "https://github.com/inbo/archivaltag", - "pitfalls": { - "P003": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "There are more than two authors but only one field for them (\"author\": \"Thomas Boch and Matthieu Baumann\") instead of a list" - }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "ad337685076bb7eae906bee4dae6067812564284" - }, - "repo_32": { - "url": "https://github.com/ms609/Quartet", - "pitfalls": {}, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - } - }, - "commit ID": "8b81f549be20f251f71f2be402c5ff6d90dada3f" - }, - "repo_33": { - "url": "https://github.com/tvwenger/bayes_spec", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "Version does not correspond to the version used in the latest release" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W007": { - "source_file": "codemeta.json", - "description": "Identifier is empty" - } - }, - "commit ID": "2dc53e3fc9302b8a40fcaec6384ee152c700590a" - }, - "repo_34": { - "url": "https://github.com/caseyyoungflesh/MCMCvis", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - } - }, - "commit ID": "3c7b05282dbe3b509f2a101e0ac5fd397c283cfa" - }, - "repo_35": { - "url": "https://github.com/sep-developers/sep", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "Version does not correspond to the version used in the latest release" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - } - }, - "commit ID": "93b3ac52e0f6cb26449204dc8bc8c3cf65602f0f" - }, - "repo_36": { - "url": "https://github.com/ropensci/tradestatistics", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P009": { - "source_file": "codemeta.json", - "description": "coderepository points to their homepage" - }, - "P017": { - "source_file": "codemeta.json, DESCRIPTION", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "4c0b85989f0085f4eb4c16eaefab6214b7854b6b" - }, - "repo_37": { - "url": "https://github.com/bioc/BioCor", - "pitfalls": { - "P010": { - "source_file": "LICENSE", - "description": "The file does not have any specific license except for copyright" - }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "e26910ce2bb0f6e1b4edcde1b0fa925d78c837a0" - }, - "repo_38": { - "url": "https://github.com/ropensci-archive/tidytags", - "pitfalls": { - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "65c40bcb0e6721b55be676c42b524e33ea59885e" - }, - "repo_39": { - "url": "https://github.com/giscience-fsu/sperrorest", - "pitfalls": { - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "b4d2a1426bfcbb2f5630c6182ff946b926f96e4a" - }, - "repo_40": { - "url": "https://github.com/IBM/multi-variate-parallel-transformer", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "9f5357bb55d53c66e9cfc63ef39fddb05c1c1ad7" - }, - "repo_41": { - "url": "https://github.com/mia-jinns/jinns", - "pitfalls": { - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "dbd98a4fe05f04b8f96d1bf23ea977a3938c8d66" - }, - "repo_42": { - "url": "https://github.com/PRIDE-Archive/pridepy", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "b046bd00569ae3930b51581d559cc5c5afde866a" - }, - "repo_44": { - "url": "https://github.com/SedFoam/sedfoam", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "08a5552af912fa8c89a265329484618ae7919be9" - }, - "repo_45": { - "url": "https://github.com/assume-framework/assume", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "Version does not correspond to the version used in the latest release" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - } - }, - "commit ID": "aaa904c603ef267aaab6872d67cd87affcb17688" - }, - "repo_46": { - "url": "https://github.com/felixsc1/COSplay", - "pitfalls": { - "P013": { - "source_file": "codemeta.json", - "description": "License does not have the specific version" - } - }, - "warnings": { - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W007": { - "source_file": "codemeta.json", - "description": "Identifier is empty" - } - }, - "commit ID": "9a10c3f55b1f80c916d55acb3110402cdfda6fa5" - }, - "repo_47": { - "url": "https://github.com/megasanjay/testrepository", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P011": { - "source_file": "codemeta.json", - "description": "IssueTracker violates the expected URL format" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "b589e13fb3a725d82d6d0f9a8c68de51b765e546" - }, - "repo_48": { - "url": "https://github.com/GlobalEcologyLab/poems", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "129b021c42b726a9cb3e8b2b0786a1bc9513f4d9" - }, - "repo_49": { - "url": "https://github.com/EDIorg/ecocomDP", - "pitfalls": {}, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "531bbefc6a584cfde708c8112ac08b9c63b810bc" - }, - "repo_50": { - "url": "https://github.com/fhdsl/conrad", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "f7bda1bcc042e61b96ff84c860f3bb0ff5d690b1" - }, - "repo_51": { - "url": "https://github.com/MiguelRodo/Slides24STA5069Z", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "44fa1574b3dd34eee6eda27fb8428e44c4a9dd51" - }, - "repo_52": { - "url": "https://github.com/FairRootGroup/DDS", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - } - }, - "warnings": {}, - "commit ID": "39e33651d1fe319411d7c50ff44b5ede31d75f9d" - }, - "repo_53": { - "url": "https://github.com/amd/mumps-build", - "pitfalls": { - "P014": { - "source_file": "codemeta.json", - "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" - }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "a9af8ebc5a24c075f62464daf03b30ce6ab1945b" - }, - "repo_54": { - "url": "https://github.com/MolSSI/QCEngine", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "cdda3660afee241968907c3020ee368ef8230b99" - }, - "repo_55": { - "url": "https://github.com/Simple-Robotics/proxsuite", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "00a6eff9dcb21f31b8990d232d46fba5d6b18cbf" - }, - "repo_56": { - "url": "https://github.com/ropensci/occCite", - "pitfalls": { - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "b1af9efcf9a6b892591297c08bc2f0e1c00b573a" - }, - "repo_57": { - "url": "https://github.com/sscu-budapest/lead-contamination-hungary", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "17db2298e25bb439873e3746ddab6aad05b9014f" - }, - "repo_58": { - "url": "https://github.com/Mariizero/ECGRat", - "pitfalls": { - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "eaeb1758e791926d267c69807ad5b3dab75c98a9" - }, - "repo_59": { - "url": "https://github.com/khinsen/MMTK", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "84547c238580201fe21bf3f227be7c02a1a2b9bc" - }, - "repo_60": { - "url": "https://github.com/electronicvisions/releases-ebrains", - "pitfalls": { - "P014": { - "source_file": "codemeta.json", - "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W005": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "softwareRequirements have more than one req, but it\u2019s written as one string" - } - }, - "commit ID": "fcd2149561ab1796fba4d2500facdd3e532a6b86" - }, - "repo_61": { - "url": "https://github.com/LanguageMachines/foliautils", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "bdcfd01531c0b147bfc2cb08f9e8e351db6100fb" - }, - "repo_62": { - "url": "https://github.com/yt-project/unyt", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - }, - "P013": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "License does not have the specific version" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W007": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Identifier is empty" - } - }, - "commit ID": "969fc6a629d332568832b849c6cb058d405ad442" - }, - "repo_63": { - "url": "https://github.com/cristal-smac/ipd", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "40c86c7f7ad51599ed402ab03bbfad398d4cce61" - }, - "repo_64": { - "url": "https://github.com/grycap/im-client", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "2e9f20e0a1326a63998b2c181042f5315515b98d" - }, - "repo_65": { - "url": "https://github.com/ashbythorpe/selenider", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "0f802fea4d6429786335a9f31ca53b0e941a80de" - }, - "repo_66": { - "url": "https://github.com/HumanBrainProject/kg-core-sdks", - "pitfalls": { - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "83b3091785a7e007408e463122cd64cd40049bad" - }, - "repo_67": { - "url": "https://github.com/ajpelu/likelihoodTools", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P013": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "License does not have the specific version" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "e0d8fdb5b69d27a641ffc4731e8c2e5b6a21b67c" - }, - "repo_68": { - "url": "https://github.com/KonradHoeffner/rickview", - "pitfalls": { - "P014": { - "source_file": "codemeta.json", - "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "934e834915544005e0a0106d45d222d4e745f129" - }, - "repo_69": { - "url": "https://github.com/dankelley/oce", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - }, - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P013": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "License does not have the specific version" - }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "40904f6d5b9b1fd3d2d0631da59759283285a93f" - }, - "repo_70": { - "url": "https://github.com/jonas-ellert/linear-time-runs", - "pitfalls": {}, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "065dfae01cccc8fa7fa8b116cfa91f272c0b22ba" - }, - "repo_71": { - "url": "https://github.com/Miagarciaru/atlas-outreach-data-tools-for-lumi36", - "pitfalls": { - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "fc28e29316a373b917db9e88c778fb52697476cc" - }, - "repo_72": { - "url": "https://github.com/peterpolidoro/kicad_bom", - "pitfalls": { - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "9868eeec378a9a3723c963c66a4a5e77023903aa" - }, - "repo_73": { - "url": "https://github.com/FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization", - "pitfalls": { - "P011": { - "source_file": "codemeta.json", - "description": "IssueTracker violates the expected URL format" - }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "19cc44fd5204dcc32fdff9e1a2213e5aa74db5b2" - }, - "repo_74": { - "url": "https://github.com/Nowosad/rcartocolor", - "pitfalls": { - "P010": { - "source_file": "LICENSE", - "description": "The file does not have any specific license except for copyright" - }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "39298c7dd95fc9d661ec88fd8fe38f1eaefe0322" - }, - "repo_75": { - "url": "https://github.com/DanielSc4/inseq", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "5a217b0410ba73d0e6b2df712d04569497a3be97" - }, - "repo_76": { - "url": "https://github.com/aravind-j/EvaluateCore", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - }, - "P003": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "There are more than two authors but only one field for them (\"author\": \"Thomas Boch and Matthieu Baumann\") instead of a list" - }, - "P009": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "coderepository points to their homepage" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W008": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "GivenName in author field, has more than one name" - } - }, - "commit ID": "83f380c102022ddfd0fb275c821b9f16e2ec4cd4" - }, - "repo_77": { - "url": "https://github.com/matthiasprobst/pivmetalib", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "a8d2fafb200cb3663f77c21bf768b94c87a2618c" - }, - "repo_78": { - "url": "https://github.com/craddm/eegUtils", - "pitfalls": { - "P010": { - "source_file": "LICENSE", - "description": "The file does not have any specific license except for copyright" - }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "2b2dbe123b1fabaac414aa0f62b8259194d40e5f" - }, - "repo_79": { - "url": "https://github.com/arviz-devs/preliz", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "warnings": {}, - "commit ID": "2fbd0c585d81faadbc5b9818c151323a89d890b4" - }, - "repo_80": { - "url": "https://github.com/JSadowska/testLille", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "a944981f43c1bd37710b8a41442754bdc95e339b" - }, - "repo_81": { - "url": "https://github.com/riatelab/tanaka", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "fd2efc3d9b417612c81c318f0223a40f5f4e6518" - }, - "repo_82": { - "url": "https://github.com/underworldcode/underworld2", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - }, - "P006": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "License pointing to a local file instead of stating the name. For example: \u201clicense\u201d: LICENSE.MD" - }, - "P013": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "License does not have the specific version" - }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - } - }, - "commit ID": "a017a16c73c7c8bbb2869ceb05080c5c5098ac8e" - }, - "repo_83": { - "url": "https://github.com/caltechlibrary/admin-shell-scripts", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "ba5753c86812f4230e2c68dcecaf825c22aeefd4" - }, - "repo_84": { - "url": "https://github.com/jvegreg/ESMValCore", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P009": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "coderepository points to their homepage" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "03eb1c942bf1dc3be98cb30c3592b42e82a94f16" - }, - "repo_85": { - "url": "https://github.com/sthanhe/ParticleDispersion", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "commit ID": "9eafc76b75a52846b9bf78aa8a2fd0c24c5f2b9d" - }, - "repo_86": { - "url": "https://github.com/Neplex/COveR", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P013": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "License does not have the specific version" - } - }, - "warnings": { - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "35423ec7f840c68070b73a9910350c1ac93e4a53" - }, - "repo_87": { - "url": "https://github.com/AI5GW/Goertzel", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "commit ID": "2eb355240d0a66147309c783c91877af350414a9" - }, - "repo_88": { - "url": "https://github.com/mdstephenserdc/network_representativeness", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "commit ID": "a0f9fc12d1bf44811423b1fc212c0b6d398b677c" - }, - "repo_89": { - "url": "https://github.com/matthiasprobst/h5RDMtoolbox", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "eaf66f66d23fcc6b7b1728f2fe7ac6d65c9d9d85" - }, - "repo_90": { - "url": "https://github.com/m-team-kit/cookiecutter-web", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "728cf1ae38ce76aaaa31fd52bb46006144a2e5fa" - }, - "repo_91": { - "url": "https://github.com/ParaStation/psmpi", - "pitfalls": { - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "375f8ee387a70bb5e80b774c0ec8472f2ca7d840" - }, - "repo_92": { - "url": "https://github.com/LanguageMachines/frog", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - } - }, - "commit ID": "53da3bfd9958af5e7221348607f6db358edef486" - }, - "repo_93": { - "url": "https://github.com/LDEO-CREW/Pythonic-DISORT", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "eb92fb81d422e76c1501d196bf14db6756430d03" - }, - "repo_94": { - "url": "https://github.com/barbagroup/PetIBM", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - } - }, - "warnings": { - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W007": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Identifier is empty" - } - }, - "commit ID": "be91f218702ada7fe569fe77c258fa748f075713" - }, - "repo_95": { - "url": "https://github.com/DrMattG/SDGsR", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P009": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "coderepository points to their homepage" - } - }, - "commit ID": "fa1898e88b9a31a05c2b722f36d6993595536a12" - }, - "repo_96": { - "url": "https://github.com/tesselle/kairos", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P009": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "coderepository points to their homepage" - }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - } - }, - "warnings": { - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "113e0be3cc9beb2895f0ff5ac95063aad219b536" - }, - "repo_97": { - "url": "https://github.com/SeUniVr/PLC-RE", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "a12a44cbc077dbd4c20b5f4764f9d53da5647b86" - }, - "repo_98": { - "url": "https://github.com/andrew-saydjari/mfouesneau.github.com", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "17fbd909db0122eeca39d0c313b11742e7fd8164" - }, - "repo_99": { - "url": "https://github.com/fran2410/AI-Open-Science", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "592afb0b0f8a64cb57b66ed4f79d2bca9f448fbc" - }, - "repo_100": { - "url": "https://github.com/umr-amap/StormR", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - }, - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - }, - "P018": { - "source_file": "codemeta.json", - "description": "Identifier uses raw SWHIDs without their resolvable URL" - } - }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - } - }, - "commit ID": "0f179f94caac8ee075473472cb0474f54e745947" - }, - "repo_101": { - "url": "https://github.com/viznuv/transforEmotion", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "commit ID": "f40dbf651f4361c2cd2dca4092e6e90b9bf4a073" - }, - "repo_102": { - "url": "https://github.com/rOpenGov/r311", - "pitfalls": { - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "commit ID": "1273245299f477b47754319cf0e22b8cdf4995a8" - }, - "repo_103": { - "url": "https://github.com/R3BRootGroup/sofia", - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W005": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "softwareRequirements have more than one req, but it\u2019s written as one string" - } - }, - "commit ID": "ce7e8f0296333ca952d5f5554c068cc44a500380" - }, - "repo_104": { - "url": "https://github.com/sorokinvld/LLFn", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "a8ec8da19a3cc5d8207d362add83181bffa18c4e" - }, - "repo_105": { - "url": "https://github.com/DeepRank/Deeprank-GNN", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "warnings": {}, - "commit ID": "544ee2b98a1d784047c25f4014f09a1effcdbcec" - }, - "repo_106": { - "url": "https://github.com/r-spatialecology/landscapemetrics", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - }, - "P009": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "coderepository points to their homepage" - }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - } - }, - "warnings": { - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - } - }, - "commit ID": "9e777a5c5ec568ebca8f5ddec7bed1c2d465a357" - }, - "repo_107": { - "url": "https://github.com/aloftdata/getRad", - "pitfalls": { - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, - "warnings": { - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "f4bc21602adecdae6dfd123e8d439933de426f7b" - }, - "repo_110": { - "url": "https://github.com/R-Lum/Luminescence", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - } - }, - "warnings": { - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "3aca65758cd130df06afb274c6a419033ecdadd0" - }, - "repo_111": { - "url": "https://github.com/naaci/watermarking", - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "48211f102defdb16d0cd3cf6fc281518a4a96442" - } -} \ No newline at end of file diff --git a/docs/ground_truth/home.html b/docs/ground_truth/home.html index 4f536de..e0ab6ad 100644 --- a/docs/ground_truth/home.html +++ b/docs/ground_truth/home.html @@ -94,7 +94,7 @@

RsMetaCheck Study

from version mismatches, license issues, broken URLs. To verify the performance of our tool we made this study we are building a ground truth dataset that was manually annotated from evaluating a sample of 150 repositories from InnovationSprint2025 and - a small sample of openAIRE, then we tested RSMetaCheck across versions 0.3.0 and 0.3.3 with comparison to the ground truth that we established. + a small sample of openAIRE, then had RSMetaCheck tested across versions 0.3.0 and 0.3.3 with comparison to the ground truth that we have established.