diff --git a/BACKUP/ground_truth/comparison.html b/BACKUP/ground_truth/comparison.html new file mode 100644 index 0000000..97f20ba --- /dev/null +++ b/BACKUP/ground_truth/comparison.html @@ -0,0 +1,529 @@ + + + + + + RsMetaCheck — 0.3.0 vs 0.3.1 Comparison + + + + +
+ ← Ground Truth Report +
+ +

0.3.0 vs 0.3.1 — Comparison

+ +

+ This page compares the detection results of RsMetaCheck version 0.3.0 and + version 0.3.1 on the ground truth dataset, highlighting improvements and + corrections in pitfall and warning detection across the 85 openAIRE + repositories. +

+ +

+ +
+

0.3.0 Pitfall & Warning Distribution

+ +
+
+

Pitfalls (P001–P019)

+ +
+
+

Warnings (W001–W010)

+ +
+
+ +
+

0.3.1 Pitfall & Warning Distribution

+ +
+
+

Pitfalls (P001–P019)

+ +
+
+

Warnings (W001–W010)

+ +
+
+ +
+

The “Before & After” Comparison

+ +
+
+

Pitfalls

+ +
+
+

Warnings

+ +
+
+ +
+

Repository-Level Comparison

+ +
+ + + + + + + + + + + +
RepositoryCode0.3.0 Source0.3.0 Description0.3.1 Source0.3.1 Description
+
+ + + + + diff --git a/BACKUP/ground_truth/index.html b/BACKUP/ground_truth/index.html new file mode 100644 index 0000000..d1fdb68 --- /dev/null +++ b/BACKUP/ground_truth/index.html @@ -0,0 +1,305 @@ + + + + + + RsMetaCheck Pitfalls Report + + + + +
+ 0.3.0 vs 0.3.1 Comparison → +
+ +

Ground Truth Report

+ +

+ This ground truth study evaluated 84 software repositories from the openAIRE graph. + All repositories contain a codemeta.json file and were examined across + multiple metadata sources including package manifests (e.g., setup.py, + package.json, DESCRIPTION), citation files + (CITATION.cff), licensing files, README documentation, and other + structured or semi-structured metadata artifacts. +

+ +

+ +
+ + + + + + + + + + +
RepositoryCommit IDPitfall / Warning CodeDescriptionSource File
+
+ + + + \ No newline at end of file diff --git a/BACKUP/ground_truth/summary_0_3_0.json b/BACKUP/ground_truth/summary_0_3_0.json new file mode 100644 index 0000000..4c5616d --- /dev/null +++ b/BACKUP/ground_truth/summary_0_3_0.json @@ -0,0 +1,2492 @@ +{ + "AI5GW/Goertzel": { + "url": "https://github.com/AI5GW/Goertzel", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W003": { + "source_file": "README.md", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/AI5GW/Goertzel/2eb355240d0a66147309c783c91877af350414a9/LICENSE" + } + } + }, + "BM32ESRF/LaueNN": { + "url": "https://github.com/BM32ESRF/LaueNN", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: matplotlib, Keras, numpy, h5py, tensorflow, PyQt5, scikit-learn, fabio, networkx, scikit-image, tqdm, scipy" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2023-03-24T00:00:00' is outdated compared to repository date '2026-03-16T10:36:05'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python 3" + } + } + }, + "CardiacModelling/protocol-design-hERG": { + "url": "https://github.com/CardiacModelling/protocol-design-hERG", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '1.0.1' does not match release version '1.0'" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/CardiacModelling/protocol-design-hERG" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: pints, myokit" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2016-10-18T00:00:00' is outdated compared to repository date '2025-07-10T09:56:55'" + } + } + }, + "ComputationalBiomechanicsLab/opensim-creator": { + "url": "https://github.com/ComputationalBiomechanicsLab/opensim-creator", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "version '0.7.3' does not match version '2.12.0' in pyproject.toml" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: meson, ninja" + } + } + }, + "ComputationalGenomics/Reveal": { + "url": "https://github.com/ComputationalGenomics/Reveal", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: numpy, pandas, joblib, sphinx, sphinx-autodoc-typehints, sphinx_rtd_theme, myst_parser" + } + } + }, + "DrMattG/SDGsR": { + "url": "https://github.com/DrMattG/SDGsR", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P009": { + "source_file": "codemeta.json", + "description": "codeRepository points to homepage instead of repository: https://drmattg.github.io/SDGsR/" + }, + "P013": { + "source_file": "DESCRIPTION", + "description": "License does not specify version: 'GPL (>= 3)'" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/DrMattG/SDGsR" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: jsonlite, here, readr, dplyr, tidyr" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/DrMattG/SDGsR/fa1898e88b9a31a05c2b722f36d6993595536a12/LICENSE.md" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + } + } + }, + "Duke-GCB/calrissian": { + "url": "https://github.com/Duke-GCB/calrissian", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.16.0' does not match release version '0.18.1'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: hatchling" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2023-10-23T00:00:00' is outdated compared to repository date '2026-02-12T01:16:54'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python" + } + } + }, + "EDIorg/ecocomDP": { + "url": "https://github.com/EDIorg/ecocomDP", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: RColorBrewer, data.table, dplyr, geosphere, ggplot2, httr, lubridate, magrittr, methods, rlang, rmarkdown, stats, stringr, tidyr, tools, utils, uuid, xml2, neonOS" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + } + } + }, + "ElektraInitiative/libelektra": { + "url": "https://github.com/ElektraInitiative/libelektra", + "pitfalls": { + "P001": { + "source_file": "package.json", + "description": "version '2.0.0' does not match release version '0.10.0'" + }, + "P006": { + "source_file": "package.json", + "description": "License points to local file instead of license name: 'SEE LICENSE IN ../../../LICENSE.md'" + }, + "P009": { + "source_file": "setup.py", + "description": "codeRepository points to homepage instead of repository: https://www.libelektra.org" + }, + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'BSD'" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/ElektraInitiative/libelektra" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.8.17' does not match version '2.0.0' in package.json" + } + }, + "warnings": { + "W001": { + "source_file": "package.json", + "description": "contains software requirements without versions: wheel" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2016-07-23T00:00:00' is outdated compared to repository date '2026-05-11T09:01:19'" + }, + "W007": { + "source_file": "metadata files", + "description": "identifier field is empty or missing" + }, + "W010": { + "source_file": "package.json", + "description": "codeRepository uses Git shorthand instead of full URL: 'github:ElektraInitiative/libelektra'" + } + } + }, + "FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization": { + "url": "https://github.com/FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization", + "pitfalls": { + "P011": { + "source_file": "metadata files", + "description": "IssueTracker URL violates expected format: https://gvipers.imt-nord-europe.fr/m3tal/csdvp-evolutionary-algorithm-optimization/issues" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: gcc, cMake, swh:1:dir:cc83fa70d755c8bae509b3c9eb56cb3a8e7a339e;origin=https://gitlab.inria.fr/paradiseo/paradiseo;visit=swh:1:snp:ab929bf560e9d1ad33143b73d38434e900f01858;anchor=swh:1:rev:c2a3ed4e7f67772afb37ea325c9ef80fca2b008d" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2023-11-20T00:00:00' is outdated compared to repository date '2024-06-11T13:07:36'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C++" + } + } + }, + "FairRootGroup/DDS": { + "url": "https://github.com/FairRootGroup/DDS", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version 'master' does not match release version '3.17'" + } + }, + "warnings": {} + }, + "FairRootGroup/FairMQ": { + "url": "https://github.com/FairRootGroup/FairMQ", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version 'master' does not match release version '1.10.0'" + }, + "P006": { + "source_file": "codemeta.json", + "description": "License points to local file instead of license name: './COPYRIGHT'" + } + }, + "warnings": {} + }, + "HumanBrainProject/kg-core-sdks": { + "url": "https://github.com/HumanBrainProject/kg-core-sdks", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "version '0.9.20' does not match version '0.9.7' in package.json" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: requests, pydantic, jinja2" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-11-21T00:00:00' is outdated compared to repository date '2026-01-24T14:06:50'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python 3" + } + } + }, + "IBM/multi-variate-parallel-transformer": { + "url": "https://github.com/IBM/multi-variate-parallel-transformer", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: mgzip, pathtools, antlr4-python3-runtime, wheel, typing-extensions, maturin, hjson, ninja, msgpack, py-cpuinfo" + } + } + }, + "JSadowska/testLille": { + "url": "https://github.com/JSadowska/testLille", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/JSadowska/testLille" + } + }, + "warnings": { + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/JSadowska/testLille/a944981f43c1bd37710b8a41442754bdc95e339b/LICENSE" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python" + } + } + }, + "Kaffeegangster/tclf": { + "url": "https://github.com/Kaffeegangster/tclf", + "pitfalls": { + "P006": { + "source_file": "pyproject.toml", + "description": "License points to local file instead of license name: 'License file: LICENSE.txt'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: numpy, pandas, scikit-learn" + } + } + }, + "KonradHoeffner/rickview": { + "url": "https://github.com/KonradHoeffner/rickview", + "pitfalls": { + "P014": { + "source_file": "metadata files", + "description": "Identifier uses bare DOI instead of full URL: '10.5281/zenodo.8290117'" + } + }, + "warnings": { + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Rust" + } + } + }, + "LDEO-CREW/Pythonic-DISORT": { + "url": "https://github.com/LDEO-CREW/Pythonic-DISORT", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: numpy, scipy, ipython, matplotlib, sphinx, nbsphinx, python_docs_theme" + } + } + }, + "LanguageMachines/foliautils": { + "url": "https://github.com/LanguageMachines/foliautils", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.24' does not match release version '0.23'" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: icu, libxml2, ticcutils, libfolia" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C++" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'foliautils'" + }, + "W009": { + "source_file": "metadata files", + "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "LanguageMachines/frog": { + "url": "https://github.com/LanguageMachines/frog", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.35' does not match release version '0.34'" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: icu, libxml2, ticcutils, timbl, libfolia, mbt, ucto" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2023-12-05T00:00:00' is outdated compared to repository date '2026-05-07T10:29:51'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://github.com/LanguageMachines/frog/blob/master/README.md" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C++" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'frog'" + } + } + }, + "LanguageMachines/ucto": { + "url": "https://github.com/LanguageMachines/ucto", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: icu, libxml2, ticcutils, libfolia" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2025-12-11T00:00:00' is outdated compared to repository date '2026-02-09T12:18:49'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C++" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'ucto'" + } + } + }, + "Mariizero/ECGRat": { + "url": "https://github.com/Mariizero/ECGRat", + "pitfalls": { + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/Mariizero/ECGRat" + } + }, + "warnings": { + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python 3" + } + } + }, + "Miagarciaru/atlas-outreach-data-tools-for-lumi36": { + "url": "https://github.com/Miagarciaru/atlas-outreach-data-tools-for-lumi36", + "pitfalls": { + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/Miagarciaru/atlas-outreach-data-tools-for-lumi36" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: Python, ROOT" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2021-09-01T00:00:00' is outdated compared to repository date '2025-04-02T14:39:02'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C++, bash" + } + } + }, + "MiguelRodo/Slides24STA5069Z": { + "url": "https://github.com/MiguelRodo/Slides24STA5069Z", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.0.0.1' does not match release version 'archive'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.0.0.1' does not match version '3.4.0-1' in DESCRIPTION" + } + }, + "warnings": { + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + } + } + }, + "MolSSI/QCEngine": { + "url": "https://github.com/MolSSI/QCEngine", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.32' does not match release version '0.50.0rc1'" + } + }, + "warnings": { + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python" + } + } + }, + "Neplex/ArchiTXT": { + "url": "https://github.com/Neplex/ArchiTXT", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: unidecode, unidecode, benepar, benepar, levenshtein, levenshtein, more-itertools, more-itertools, typing-extensions, typing-extensions, langchain-core, langchain-huggingface, streamlit-agraph, streamlit-tags" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/Neplex/ArchiTXT/e82e532453dff78fe5ea2475774be167521c0fca/LICENSE" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'ArchiTXT'" + }, + "W009": { + "source_file": "metadata files", + "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#wip" + } + } + }, + "Neplex/COveR": { + "url": "https://github.com/Neplex/COveR", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '1.1.0' does not match release version '1.0.4'" + }, + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P013": { + "source_file": "DESCRIPTION", + "description": "License does not specify version: 'GPL (>= 2)'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2017-12-06T00:00:00' is outdated compared to repository date '2026-05-21T08:49:11'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C, R" + } + } + }, + "NeuralEnsemble/PyNN": { + "url": "https://github.com/NeuralEnsemble/PyNN", + "pitfalls": { + "P001": { + "source_file": "pyproject.toml", + "description": "version '0.12.4' does not match release version '0.12.1'" + }, + "P012": { + "source_file": "metadata files", + "description": "downloadURL is outdated or invalid: https://files.pythonhosted.org/packages/f2/04/371f66ed8175e41a3d5ee04d957f6253e378cc4616b485e4c6a1b9f27626/pynn-0.12.4.tar.gz" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: morphio, setuptools, at least one of the supported simulators: e.g. NEURON, NEST, or Brian., Python (version 3.9-3.13)" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2025-04-02T00:00:00' is outdated compared to repository date '2026-05-06T09:40:39'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python" + }, + "W005": { + "source_file": "codemeta.json", + "description": "Multiple requirements written as single string: 'at least one of the supported simulators: e.g. NEURON, NEST, or Brian.'" + } + } + }, + "PRIDE-Archive/pridepy": { + "url": "https://github.com/PRIDE-Archive/pridepy", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: requests, ratelimit, click, pytest, setuptools, boto3, botocore, tqdm, urllib3, httpx" + } + } + }, + "Pakillo/grateful": { + "url": "https://github.com/Pakillo/grateful", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: desc, knitr, remotes, renv, rmarkdown, rstudioapi, utils" + } + } + }, + "ParaStation/psmpi": { + "url": "https://github.com/ParaStation/psmpi", + "pitfalls": { + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/ParaStation/psmpi" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '2.8.0' does not match version '1.0.0' in package.json" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: pytest, pytest-xdist, pytest-html, pyyaml, retrying, junitparser" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2022-07-05T00:00:00' is outdated compared to repository date '2026-04-28T16:13:04'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C" + } + } + }, + "R3BRootGroup/sofia": { + "url": "https://github.com/R3BRootGroup/sofia", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version 'sep25' does not match release version 'dec25'" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: FairRoot, FairSoft, R3BRoot" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2025-09-15T00:00:00' is outdated compared to repository date '2025-12-31T17:53:21'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C++, C" + }, + "W005": { + "source_file": "codemeta.json", + "description": "Multiple requirements written as single string: 'FairRoot, FairSoft, R3BRoot'" + } + } + }, + "Rbfinch/grepq": { + "url": "https://github.com/Rbfinch/grepq", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '1.4.1' does not match release version 'grepq-v1.6.4'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version 'v1.4.1' does not match version '1.6.5' in Cargo.toml" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2025-01-17T00:00:00' is outdated compared to repository date '2026-04-28T08:34:01'" + } + } + }, + "SeUniVr/PLC-RE": { + "url": "https://github.com/SeUniVr/PLC-RE", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: pandas, ray, json, modbus_tk, logging, itertools, scipy, glob2, numpy, matplotlib" + } + } + }, + "SedFoam/sedfoam": { + "url": "https://github.com/SedFoam/sedfoam", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '2412' does not match release version '2312'" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: OpenFoam (ESI version)" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2022-07-08T00:00:00' is outdated compared to repository date '2026-05-14T07:21:25'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C++, OpenFoam" + } + } + }, + "Simple-Robotics/proxsuite": { + "url": "https://github.com/Simple-Robotics/proxsuite", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: numpy, scipy, cmeel[build], cmeel-eigen, cmeel-simde, typing-extensions" + } + } + }, + "Unknown": { + "url": "https://gricad-gitlab.univ-grenoble-alpes.fr/bidegarb/nautil", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: Maple" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Maple 10" + } + } + }, + "aaronmck/Badread": { + "url": "https://github.com/aaronmck/Badread", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'GPL v3.0'" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/aaronmck/Badread" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: edlib, numpy, matplotlib, scipy" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2019-03-01T00:00:00' is outdated compared to repository date '2021-11-20T03:09:52'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/aaronmck/Badread/main/LICENSE" + }, + "W007": { + "source_file": "metadata files", + "description": "identifier field is empty or missing" + } + } + }, + "ajpelu/likelihoodTools": { + "url": "https://github.com/ajpelu/likelihoodTools", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P013": { + "source_file": "DESCRIPTION", + "description": "License does not specify version: 'GPL (>= 3)'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.1.0' does not match version '1.0.0' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: dplyr, ggplot2, rlang" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/ajpelu/likelihoodTools/e0d8fdb5b69d27a641ffc4731e8c2e5b6a21b67c/LICENSE.md" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + } + } + }, + "amd/mumps-build": { + "url": "https://github.com/amd/mumps-build", + "pitfalls": { + "P014": { + "source_file": "metadata files", + "description": "Identifier uses bare DOI instead of full URL: '10.1145/3242094'" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/amd/mumps-build" + } + }, + "warnings": { + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C, Fortran" + } + } + }, + "andrew-saydjari/mfouesneau.github.com": { + "url": "https://github.com/andrew-saydjari/mfouesneau.github.com", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: wheel" + } + } + }, + "aravind-j/EvaluateCore": { + "url": "https://github.com/aravind-j/EvaluateCore", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.1.3.9000' does not match release version 'CRAN_0.1.4'" + }, + "P003": { + "source_file": "codemeta.json", + "description": "Multiple authors found in single field: '['Dhammaprakash', 'Pandhari'] Wankhede'" + }, + "P009": { + "source_file": "DESCRIPTION", + "description": "codeRepository points to homepage instead of repository: https://github.com/aravind-j/EvaluateCore\n https://CRAN.R-project.org/package=EvaluateCore\n https://aravind-j.github.io/EvaluateCore/\n https://doi.org/10.5281/zenodo.3875930" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.1.3.9000' does not match version '0.1.4.9000' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: agricolae, boot, car, cluster, dplyr, entropy, ggcorrplot, ggplot2, ggtext, grDevices, gridExtra, kSamples, mathjaxr, missMDA, psych, reshape2, Rdpack, stats, tibble, vegan" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + }, + "W008": { + "source_file": "codemeta.json", + "description": "GivenName is a list instead of string: ['Dhammaprakash', 'Pandhari'] Wankhede" + } + } + }, + "assume-framework/assume": { + "url": "https://github.com/assume-framework/assume", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.5.5' does not match release version '0.6.0'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: highspy" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2025-11-12T00:00:00' is outdated compared to repository date '2026-05-21T13:35:17'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/assume-framework/assume/aaa904c603ef267aaab6872d67cd87affcb17688/README.md" + } + } + }, + "barbagroup/PetIBM": { + "url": "https://github.com/barbagroup/PetIBM", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.3' does not match release version '0.5.4'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2017-01-25T00:00:00' is outdated compared to repository date '2026-05-21T03:09:20'" + }, + "W007": { + "source_file": "metadata files", + "description": "identifier field is empty or missing" + } + } + }, + "bernd-mueller/snoke": { + "url": "https://github.com/bernd-mueller/snoke", + "pitfalls": { + "P001": { + "source_file": "pom.xml", + "description": "version '1.0-SNAPSHOT' does not match release version '1.1'" + }, + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'https://spdx.org/licenses/CC-BY-NC-SA-4.0'" + }, + "P014": { + "source_file": "metadata files", + "description": "Identifier uses bare DOI instead of full URL: '10.5281/zenodo.4680086\t'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '1.1' does not match version '1.0-SNAPSHOT' in pom.xml" + } + }, + "warnings": { + "W001": { + "source_file": "pom.xml", + "description": "contains software requirements without versions: Java 8" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2021-02-19T00:00:00' is outdated compared to repository date '2026-02-06T13:12:05'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/bernd-mueller/snoke/master/LICENSE" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Java" + } + } + }, + "bioconductor-source/treeio": { + "url": "https://github.com/bioconductor-source/treeio", + "pitfalls": { + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/bioconductor-source/treeio" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '1.3.12' does not match version '1.29.1' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: ape, ape, dplyr, dplyr, jsonlite, jsonlite, magrittr, magrittr, methods, methods, rvcheck, tibble, tibble, rlang, stats, utils" + }, + "W004": { + "source_file": "", + "description": "Programming languages in metadata do not have version specifications" + } + } + }, + "brmanuel/calliope": { + "url": "https://github.com/brmanuel/calliope", + "pitfalls": { + "P009": { + "source_file": "setup.py", + "description": "codeRepository points to homepage instead of repository: https://www.callio.pe/" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/brmanuel/calliope" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2018-06-04T00:00:00' is outdated compared to repository date '2022-11-23T01:55:35'" + } + } + }, + "c-torre/replication-recanatesi-2015": { + "url": "https://github.com/c-torre/replication-recanatesi-2015", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: Parabola GNU/Linux-libre-5.7.10 x86_64 (local), CentOS GNU/Linux 7.8.2003 (cluster), Python 3.7.7" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/c-torre/replication-recanatesi-2015/full-replication/LICENSE" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python 3" + }, + "W005": { + "source_file": "codemeta.json", + "description": "Multiple requirements written as single string: 'Parabola GNU/Linux-libre-5.7.10 x86_64 (local)'" + } + } + }, + "caltechlibrary/admin-shell-scripts": { + "url": "https://github.com/caltechlibrary/admin-shell-scripts", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: bash, make, pandoc, mysql, makepasswd, jq" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2022-10-19T00:00:00' is outdated compared to repository date '2025-08-06T22:10:12'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Bash, Make" + } + } + }, + "capstone-insper/drone-swarm-search": { + "url": "https://github.com/capstone-insper/drone-swarm-search", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '1.0.3' does not match release version '0.2.6'" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: wheel, h5py, xarray, python-dotenv" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-04-25T00:00:00' is outdated compared to repository date '2026-05-15T17:16:03'" + }, + "W007": { + "source_file": "metadata files", + "description": "identifier field is empty or missing" + } + } + }, + "caseyyoungflesh/MCMCvis": { + "url": "https://github.com/caseyyoungflesh/MCMCvis", + "pitfalls": { + "P001": { + "source_file": "DESCRIPTION", + "description": "version '0.16.5' does not match release version '0.16.3'" + }, + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: coda, rstan, methods, overlapping, colorspace" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/caseyyoungflesh/MCMCvis/3c7b05282dbe3b509f2a101e0ac5fd397c283cfa/LICENSE.md" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'MCMCvis'" + } + } + }, + "cristal-smac/ipd": { + "url": "https://github.com/cristal-smac/ipd", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: Python 3" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2023-12-14T00:00:00' is outdated compared to repository date '2026-03-13T13:29:03'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/cristal-smac/ipd/40c86c7f7ad51599ed402ab03bbfad398d4cce61/README.md" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python" + } + } + }, + "damiendevienne/phylter": { + "url": "https://github.com/damiendevienne/phylter", + "pitfalls": { + "P013": { + "source_file": "DESCRIPTION", + "description": "License does not specify version: 'GPL (>= 2)'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: ape, ggplot2, reshape2, Rfast, RSpectra, stats, utils" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + }, + "W009": { + "source_file": "metadata files", + "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "dbbs-lab/bsb": { + "url": "https://github.com/dbbs-lab/bsb", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: Python (version 3.10+), setuptools" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2026-04-16T00:00:00' is outdated compared to repository date '2026-05-05T18:14:57'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/dbbs-lab/bsb/main/LICENSE" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python" + } + } + }, + "dynamicslab/pysindy": { + "url": "https://github.com/dynamicslab/pysindy", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '1.2.3' does not match release version '2.1.0'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: scipy, typing_extensions, setuptools, setuptools-scm" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2021-10-21T00:00:00' is outdated compared to repository date '2026-05-21T17:35:55'" + } + } + }, + "electronicvisions/releases-ebrains": { + "url": "https://github.com/electronicvisions/releases-ebrains", + "pitfalls": { + "P014": { + "source_file": "metadata files", + "description": "Identifier uses bare DOI instead of full URL: '10.5281/ZENODO.8375522'" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: cf. EBRAINS Software Distribution: `spack spec pynn-brainscales hxtorch jaxsnn`" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2026-02-19T00:00:00' is outdated compared to repository date '2026-05-05T13:41:45'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C++, Python 3, C, SystemVerilog" + }, + "W005": { + "source_file": "codemeta.json", + "description": "Multiple requirements written as single string: 'cf. EBRAINS Software Distribution: `spack spec pynn-brainscales hxtorch jaxsnn`'" + } + } + }, + "felixsc1/COSplay": { + "url": "https://github.com/felixsc1/COSplay", + "pitfalls": { + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'BSD'" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/felixsc1/COSplay" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2018-02-16T00:00:00' is outdated compared to repository date '2018-03-14T08:58:19'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/felixsc1/COSplay/9a10c3f55b1f80c916d55acb3110402cdfda6fa5/LICENSE" + }, + "W007": { + "source_file": "metadata files", + "description": "identifier field is empty or missing" + } + } + }, + "fhdsl/conrad": { + "url": "https://github.com/fhdsl/conrad", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "version '1.0.0' does not match version '1.0.0.9000' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: httr2, jsonlite, magrittr" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + } + } + }, + "fran2410/AI-Open-Science": { + "url": "https://github.com/fran2410/AI-Open-Science", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: Run the following command in the root of the repository to install dependencies:\n```bash\npoetry install\n```, Run the following command in the root of the repository to install dependencies:\n```bash\npoetry install\n```, mkdocs-material" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2025-02-26T00:00:00' is outdated compared to repository date '2025-02-28T11:09:54'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python, Dockerfile" + } + } + }, + "gavinsimpson/data.adapt.multi.test": { + "url": "https://github.com/gavinsimpson/data.adapt.multi.test", + "pitfalls": { + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/gavinsimpson/data.adapt.multi.test" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version 'v0.2.0' does not match version '0.2.0' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: tmle, foreach, parallel, doParallel, SuperLearner, calibrate, magrittr, R2HTML" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2016-11-21T00:00:00' is outdated compared to repository date '2017-03-20T21:45:15'" + }, + "W007": { + "source_file": "metadata files", + "description": "identifier field is empty or missing" + } + } + }, + "gemini3d/gemini3d": { + "url": "https://github.com/gemini3d/gemini3d", + "pitfalls": { + "P014": { + "source_file": "metadata files", + "description": "Identifier uses bare DOI instead of full URL: '10.5281/zenodo.3813224'" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/gemini3d/gemini3d" + } + }, + "warnings": { + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Fortran, Python" + } + } + }, + "geospace-code/pymap3d": { + "url": "https://github.com/geospace-code/pymap3d", + "pitfalls": { + "P014": { + "source_file": "metadata files", + "description": "Identifier uses bare DOI instead of full URL: '10.21105/joss.00580'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: wheel" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python" + } + } + }, + "grycap/im-client": { + "url": "https://github.com/grycap/im-client", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '1.8.4' does not match release version '1.8.3'" + }, + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P015": { + "source_file": "metadata files", + "description": "Continuous integration URL returns unknown: https://jenkins.i3m.upv.es/job/grycap/job/im-client-unit-master/" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: radl, netaddr, requests" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/grycap/im-client/2e9f20e0a1326a63998b2c181042f5315515b98d/LICENSE" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python 3, Python 3.6, Python 3.7, Python 3.8, Python 3.9" + } + } + }, + "iljah/hdintegrator": { + "url": "https://github.com/iljah/hdintegrator", + "pitfalls": {}, + "warnings": { + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/iljah/hdintegrator/f2ab7fb246ef88a79789e492d1f40d3a07b602d9/LICENSE" + } + } + }, + "instatdealii/idealii": { + "url": "https://github.com/instatdealii/idealii", + "pitfalls": { + "P008": { + "source_file": "codemeta.json", + "description": "Software requirements contain invalid URLs: www.github.com/dealii/dealii" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: www.github.com/dealii/dealii," + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-08-15T00:00:00' is outdated compared to repository date '2025-10-13T13:52:44'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C++, CMake, Hack" + } + } + }, + "jonas-ellert/linear-time-runs": { + "url": "https://github.com/jonas-ellert/linear-time-runs", + "pitfalls": {}, + "warnings": { + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C++" + } + } + }, + "jvegreg/ESMValCore": { + "url": "https://github.com/jvegreg/ESMValCore", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P009": { + "source_file": "setup.py", + "description": "codeRepository points to homepage instead of repository: https://www.esmvaltool.org" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: wheel, fiona, pandas, autodocsumm, dask[array], esgf-pyclient, humanfriendly, importlib_resources, isodate, jinja2, netCDF4, numpy, pillow, prov, pybtex, pyyaml, scipy, shapely[vectorized], yamale" + } + } + }, + "khinsen/MMTK": { + "url": "https://github.com/khinsen/MMTK", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '2.7.13' does not match release version 'rel2.7.13'" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: https://numpy.org/, https://github.com/khinsen/ScientificPython/" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2023-02-17T00:00:00' is outdated compared to repository date '2025-12-09T04:15:15'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/khinsen/MMTK/84547c238580201fe21bf3f227be7c02a1a2b9bc/README" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python 2" + } + } + }, + "lecfab/rescience-gorder": { + "url": "https://github.com/lecfab/rescience-gorder", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: CLI11 1.9.1, GNU Make 4.2.1, plotly.js v1.58.4, Python 3.8.5, matplotlib, numpy, linux-perf" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C++, Python 3, Bash" + }, + "W005": { + "source_file": "codemeta.json", + "description": "Multiple requirements written as single string: 'GNU Make 4.2.1'" + } + } + }, + "m-team-kit/cookiecutter-web": { + "url": "https://github.com/m-team-kit/cookiecutter-web", + "pitfalls": { + "P001": { + "source_file": "package.json", + "description": "version '0.1.0' does not match release version '1.2.0'" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/m-team-kit/cookiecutter-web" + } + }, + "warnings": { + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Javascript, Python" + } + } + }, + "matthiasprobst/h5RDMtoolbox": { + "url": "https://github.com/matthiasprobst/h5RDMtoolbox", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '2.7.4' does not match release version '2.7.3'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: wheel" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python 3, Python 3.9, Python 3.10, Python 3.11, Python 3.12, Python 3.13" + } + } + }, + "matthiasprobst/pivmetalib": { + "url": "https://github.com/matthiasprobst/pivmetalib", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: wheel" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/matthiasprobst/pivmetalib/a8d2fafb200cb3663f77c21bf768b94c87a2618c/README.md" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python 3, Python 3.9, Python 3.10, Python 3.11, Python 3.12, Python 3.13" + } + } + }, + "mdstephenserdc/network_representativeness": { + "url": "https://github.com/mdstephenserdc/network_representativeness", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/mdstephenserdc/network_representativeness/a0f9fc12d1bf44811423b1fc212c0b6d398b677c/LICENSE" + } + } + }, + "megasanjay/testrepository": { + "url": "https://github.com/megasanjay/testrepository", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P011": { + "source_file": "metadata files", + "description": "IssueTracker URL violates expected format: https://github.com/fairdataihub/testrepo/issues" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/megasanjay/testrepository" + } + }, + "warnings": { + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Ada, C++" + } + } + }, + "mia-jinns/jinns": { + "url": "https://github.com/mia-jinns/jinns", + "pitfalls": { + "P011": { + "source_file": "metadata files", + "description": "IssueTracker URL violates expected format: https://gitlab.com/mia_jinns/jinns/-/issues" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/mia-jinns/jinns" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: matplotlib, jaxtyping, setuptools, setuptools-scm, Python 3.11+" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-10-08T00:00:00' is outdated compared to repository date '2026-05-13T11:45:57'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python3" + } + } + }, + "mikldk/mitolina": { + "url": "https://github.com/mikldk/mitolina", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'GPL v2.0'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: methods" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2019-02-18T00:00:00' is outdated compared to repository date '2022-01-19T12:39:43'" + }, + "W007": { + "source_file": "metadata files", + "description": "identifier field is empty or missing" + } + } + }, + "ms609/Quartet": { + "url": "https://github.com/ms609/Quartet", + "pitfalls": { + "P013": { + "source_file": "DESCRIPTION", + "description": "License does not specify version: 'GPL (>= 2)'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: ape, lifecycle, PlotTools, viridisLite" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'Quartet'" + } + } + }, + "ms609/TreeDist": { + "url": "https://github.com/ms609/TreeDist", + "pitfalls": { + "P001": { + "source_file": "DESCRIPTION", + "description": "version '2.14.0.9000' does not match release version '2.14.0'" + }, + "P013": { + "source_file": "DESCRIPTION", + "description": "License does not specify version: 'GPL (>= 3)'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: stats, colorspace, shiny, shinyjs" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'TreeDist'" + } + } + }, + "ms609/TreeSearch": { + "url": "https://github.com/ms609/TreeSearch", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '1.8.0.9000' does not match release version '1.7.0'" + }, + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P013": { + "source_file": "DESCRIPTION", + "description": "License does not specify version: 'GPL (>= 3)'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: abind, base64enc, cluster, colorspace, fastmap, fs, future, PlotTools, promises, protoclust, Rcpp, shinyjs, stats, stringi" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/ms609/TreeSearch/d4af0fba212c8490e2c0250d3872f4b9e0d630c2/LICENSE" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'TreeSearch'" + } + } + }, + "munich-quantum-toolkit/core": { + "url": "https://github.com/munich-quantum-toolkit/core", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '3.0.0' does not match release version '3.6.1'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-11-07T00:00:00' is outdated compared to repository date '2026-05-21T12:30:23'" + }, + "W007": { + "source_file": "metadata files", + "description": "identifier field is empty or missing" + } + } + }, + "naaci/watermarking": { + "url": "https://github.com/naaci/watermarking", + "pitfalls": { + "P001": { + "source_file": "pyproject.toml", + "description": "version '0.1.0' does not match release version 'test'" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: numpy, scipy, scipy, pywavelets" + } + } + }, + "nazar-mykolyshyn/TikTok-Api": { + "url": "https://github.com/nazar-mykolyshyn/TikTok-Api", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: requests, playwright, selenium_stealth, selenium" + } + } + }, + "neuronsimulator/nrn": { + "url": "https://github.com/neuronsimulator/nrn", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: find-libpython, setuptools, Bison, Flex, C/C++ compiler" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2025-11-17T00:00:00' is outdated compared to repository date '2026-05-21T15:25:21'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C++, Python 3" + } + } + }, + "peterpolidoro/kicad_bom": { + "url": "https://github.com/peterpolidoro/kicad_bom", + "pitfalls": { + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/peterpolidoro/kicad_bom" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: setuptools" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-05-09T00:00:00' is outdated compared to repository date '2024-08-27T20:25:24'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python 3" + } + } + }, + "peterpolidoro/kicad_netlist_reader": { + "url": "https://github.com/peterpolidoro/kicad_netlist_reader", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/peterpolidoro/kicad_netlist_reader" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: setuptools" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2023-03-29T00:00:00' is outdated compared to repository date '2024-12-10T20:08:57'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/peterpolidoro/kicad_netlist_reader/1b2108e0a8da04acdb595c724f3272a73f1ab755/LICENSE" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python 3" + } + } + }, + "phreppo/bait": { + "url": "https://github.com/phreppo/bait", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/phreppo/bait" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2021-04-26T00:00:00' is outdated compared to repository date '2022-05-17T04:25:30'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/phreppo/bait/master/LICENSE" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Java" + } + } + }, + "proycon/colibri-core": { + "url": "https://github.com/proycon/colibri-core", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: wheel, Cython" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/proycon/colibri-core/master/LICENSE" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C++, Cython" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'colibricore'" + }, + "W009": { + "source_file": "metadata files", + "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "r-spatialecology/landscapemetrics": { + "url": "https://github.com/r-spatialecology/landscapemetrics", + "pitfalls": { + "P001": { + "source_file": "DESCRIPTION", + "description": "version '2.2.2' does not match release version '2.2.1'" + }, + "P009": { + "source_file": "codemeta.json", + "description": "codeRepository points to homepage instead of repository: https://r-spatialecology.github.io/landscapemetrics/" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/r-spatialecology/landscapemetrics" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: cli, ggplot2, methods, stats, terra, tibble" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/r-spatialecology/landscapemetrics/9e777a5c5ec568ebca8f5ddec7bed1c2d465a357/LICENSE.md" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'landscapemetrics'" + } + } + }, + "rOpenGov/r311": { + "url": "https://github.com/rOpenGov/r311", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "version '0.4.3' does not match version '0.4.4' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: curl, jsonlite, tools, utils" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + } + } + }, + "rcsb/py-rcsbsearchapi": { + "url": "https://github.com/rcsb/py-rcsbsearchapi", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: tqdm" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/rcsb/py-rcsbsearchapi/master/README.md" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Python 3" + } + } + }, + "riatelab/tanaka": { + "url": "https://github.com/riatelab/tanaka", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.4.0' does not match release version '0.3.0'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: terra, sf, mapiso, maplegend, grDevices, graphics" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + } + } + }, + "rism-digital/verovio": { + "url": "https://github.com/rism-digital/verovio", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '6.3.0-dev' does not match release version 'ersion-6.2.0'" + }, + "P003": { + "source_file": "package.json", + "description": "Multiple authors found in single field: 'Laurent Pugin and others'" + }, + "P009": { + "source_file": "setup.py", + "description": "codeRepository points to homepage instead of repository: https://www.verovio.org" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '6.3.0-dev' does not match version '0.1.0' in pyproject.toml" + } + }, + "warnings": { + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: C++, Python, JavaScript, Java" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'Verovio'" + } + } + }, + "ropensci/CoordinateCleaner": { + "url": "https://github.com/ropensci/CoordinateCleaner", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '2.0.20' does not match release version '2.0-4'" + }, + "P008": { + "source_file": "codemeta.json", + "description": "Software requirements contain invalid URLs: https://sysreqs.r-hub.io/get/gdal" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '2.0.20' does not match version '3.0.1' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: dplyr, dplyr, geosphere, geosphere, ggplot2, ggplot2, graphics, graphics, grDevices, grDevices, methods, methods, raster, rgbif, rgbif, rgeos, rgdal, rnaturalearth, stats, stats, sp, tidyselect, tidyselect, utils, utils, https://sysreqs.r-hub.io/get/gdal, https://sysreqs.r-hub.io/get/libgdal, terra" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'CoordinateCleaner'" + }, + "W009": { + "source_file": "metadata files", + "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "ropensci/USAboundariesData": { + "url": "https://github.com/ropensci/USAboundariesData", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.5.0' does not match release version '0.5.1'" + }, + "P003": { + "source_file": "DESCRIPTION", + "description": "Multiple authors found in single field: 'Dr. William M. Scholl Center for American History and Culture,\n The Newberry Library'" + }, + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'https://spdx.org/licenses/CC-BY-NC-SA-4.0'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.5.0' does not match version '0.5.1' in DESCRIPTION" + } + }, + "warnings": { + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + } + } + }, + "ropensci/geojson": { + "url": "https://github.com/ropensci/geojson", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.3.4' does not match version '0.3.5.9000' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: methods, methods, sp, sp, magrittr, magrittr, lazyeval, lazyeval" + } + } + }, + "ropensci/tradestatistics": { + "url": "https://github.com/ropensci/tradestatistics", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P009": { + "source_file": "codemeta.json", + "description": "codeRepository points to homepage instead of repository: https://docs.ropensci.org/tradestatistics/" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/ropensci/tradestatistics" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '4.4.0' does not match version '5.0.0' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: crul, data.table, digest, jsonlite, memoise, utils" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + } + } + }, + "sep-developers/sep": { + "url": "https://github.com/sep-developers/sep", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '1.0.0' does not match release version '1.4.1'" + }, + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'LGPL v3.0'" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/sep-developers/sep" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: wheel, Cython" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2016-09-30T00:00:00' is outdated compared to repository date '2026-05-01T12:59:54'" + } + } + }, + "sillyplots/spotifyr": { + "url": "https://github.com/sillyplots/spotifyr", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "file only contains copyright information without actual license terms" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/sillyplots/spotifyr" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: dplyr, purrr, httr, lubridate, jsonlite, readr, rvest, stringr, tibble, janitor, rlang, magrittr, assertthat, xml2" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'spotifyr'" + } + } + }, + "sje30/rescience-hor": { + "url": "https://github.com/sje30/rescience-hor", + "pitfalls": {}, + "warnings": { + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + } + } + }, + "sorokinvld/LLFn": { + "url": "https://github.com/sorokinvld/LLFn", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: poetry-core" + } + } + }, + "sourmash-bio/sourmash": { + "url": "https://github.com/sourmash-bio/sourmash", + "pitfalls": { + "P001": { + "source_file": "pyproject.toml", + "description": "version '4.9.5-dev' does not match release version '4.9.4'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version 'v1.0.0' does not match version '4.9.5-dev' in pyproject.toml" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: -e .[all], numpy, matplotlib, scipy, cffi" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2016-06-07T00:00:00' is outdated compared to repository date '2026-05-18T20:38:45'" + }, + "W007": { + "source_file": "metadata files", + "description": "identifier field is empty or missing" + } + } + }, + "sscu-budapest/lead-contamination-hungary": { + "url": "https://github.com/sscu-budapest/lead-contamination-hungary", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: datazimmer" + } + } + }, + "sthanhe/ParticleDispersion": { + "url": "https://github.com/sthanhe/ParticleDispersion", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/sthanhe/ParticleDispersion/9eafc76b75a52846b9bf78aa8a2fd0c24c5f2b9d/LICENSE" + } + } + }, + "tesselle/kairos": { + "url": "https://github.com/tesselle/kairos", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '2.3.0' does not match release version '2.2.0'" + }, + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P009": { + "source_file": "codemeta.json", + "description": "codeRepository points to homepage instead of repository: https://codeberg.org/tesselle/kairos" + }, + "P013": { + "source_file": "DESCRIPTION", + "description": "License does not specify version: 'GPL (>= 3)'" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/tesselle/kairos" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '2.3.0' does not match version '2.3.0.9000' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: extraDistr, grDevices, methods, stats, utils" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/tesselle/kairos/113e0be3cc9beb2895f0ff5ac95063aad219b536/LICENSE.md" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'kairos'" + }, + "W009": { + "source_file": "metadata files", + "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "tvwenger/bayes_spec": { + "url": "https://github.com/tvwenger/bayes_spec", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version 'unknown' does not match release version '1.8.0'" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: jupyter, ipykernel, ipywidgets, numpy, pytensor, nutpie, numba, arviz, matplotlib, scipy, scikit-learn, graphviz, jaxlib, jax, blackjax, numpyro, setuptools" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-08-15T00:00:00' is outdated compared to repository date '2025-10-30T14:25:24'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/tvwenger/bayes_spec/2dc53e3fc9302b8a40fcaec6384ee152c700590a/README.md" + }, + "W007": { + "source_file": "metadata files", + "description": "identifier field is empty or missing" + } + } + }, + "umr-amap/StormR": { + "url": "https://github.com/umr-amap/StormR", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.2.2' does not match release version '0.2.4'" + }, + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P013": { + "source_file": "DESCRIPTION", + "description": "License does not specify version: 'GPL (>= 3)'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.2.2' does not match version '0.2.1' in DESCRIPTION" + }, + "P018": { + "source_file": "metadata files", + "description": "Identifier uses raw SWHID without resolvable URL: 'swh:1:dir:aa216059c9fd003bb41938788ff4608e59a49684'" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: graphics,, maps,, methods,, ncdf4,, rworldmap,, sf,, stringr,, terra,, utils,, zoo, zoo, graphics, leaflet, maps, methods, ncdf4, rworldmap, sf, stringr, terra, utils" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-09-04T00:00:00' is outdated compared to repository date '2026-04-09T09:51:19'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/umr-amap/StormR/0f179f94caac8ee075473472cb0474f54e745947/LICENSE.md" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: R" + } + } + }, + "underworldcode/underworld2": { + "url": "https://github.com/underworldcode/underworld2", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '1.0.0' does not match release version '2.16.4'" + }, + "P006": { + "source_file": "pyproject.toml", + "description": "License points to local file instead of license name: 'License file: ./LICENSE.md'" + }, + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'GPL v3.0'" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/underworldcode/underworld2" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: ., mpi4py, h5py, pint, scipy, setuptools, ninja" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2018-12-07T00:00:00' is outdated compared to repository date '2026-05-18T01:16:41'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/underworldcode/underworld2/a017a16c73c7c8bbb2869ceb05080c5c5098ac8e/LICENSE.md" + } + } + }, + "vc1492a/PyNomaly": { + "url": "https://github.com/vc1492a/PyNomaly", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.2.0' does not match release version '0.3.5'" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository points to different repository: https://github.com/vc1492a/PyNomaly" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2018-05-07T00:00:00' is outdated compared to repository date '2026-05-16T16:32:24'" + }, + "W007": { + "source_file": "metadata files", + "description": "identifier field is empty or missing" + } + } + }, + "viznuv/transforEmotion": { + "url": "https://github.com/viznuv/transforEmotion", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P013": { + "source_file": "DESCRIPTION", + "description": "License does not specify version: 'GPL (>= 3.0)'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: dplyr, googledrive, LSAfun, Matrix, methods, pbapply, remotes, reticulate" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/viznuv/transforEmotion/f40dbf651f4361c2cd2dca4092e6e90b9bf4a073/LICENSE" + } + } + }, + "yt-project/unyt": { + "url": "https://github.com/yt-project/unyt", + "pitfalls": { + "P001": { + "source_file": "pyproject.toml", + "description": "version '3.1.0.dev0' does not match release version '3.1.0'" + }, + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'BSD'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version 'v1.0.7' does not match version '3.1.0.dev0' in pyproject.toml" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: numpy, sympy, matplotlib, sphinx" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2018-08-13T00:00:00' is outdated compared to repository date '2026-05-12T13:04:16'" + }, + "W007": { + "source_file": "metadata files", + "description": "identifier field is empty or missing" + } + } + } +} \ No newline at end of file diff --git a/BACKUP/ground_truth/summary_0_3_1.json b/BACKUP/ground_truth/summary_0_3_1.json new file mode 100644 index 0000000..1914775 --- /dev/null +++ b/BACKUP/ground_truth/summary_0_3_1.json @@ -0,0 +1,2070 @@ +{ + "AI5GW/Goertzel": { + "url": "https://github.com/AI5GW/Goertzel", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W003": { + "source_file": "README.md", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/AI5GW/Goertzel/2eb355240d0a66147309c783c91877af350414a9/README.md" + } + } + }, + "BM32ESRF/LaueNN": { + "url": "https://github.com/BM32ESRF/LaueNN", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: matplotlib, Keras, numpy, h5py, tensorflow, PyQt5, scikit-learn, fabio, networkx, scikit-image, tqdm, scipy" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2023-03-24T00:00:00' is outdated compared to repository date '2026-03-16T10:36:05'" + } + } + }, + "CardiacModelling/protocol-design-hERG": { + "url": "https://github.com/CardiacModelling/protocol-design-hERG", + "pitfalls": { + "P016": { + "source_file": "", + "description": "the correct URL is https://github.com/CardiacModelling/protocol-design-hERG, and the one found in codemeta.json is https://github.com/SALib/SALib" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: pints, myokit" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2016-10-18T00:00:00' is outdated compared to repository date '2025-07-10T09:56:55'" + } + } + }, + "ComputationalBiomechanicsLab/opensim-creator": { + "url": "https://github.com/ComputationalBiomechanicsLab/opensim-creator", + "pitfalls": { + "P001": { + "source_file": "pyproject.toml", + "description": "version '2.12.0' does not match release version '0.7.3'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.7.3' does not match version '2.12.0' in pyproject.toml" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: meson, ninja" + } + } + }, + "ComputationalGenomics/Reveal": { + "url": "https://github.com/ComputationalGenomics/Reveal", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: numpy, pandas, joblib, sphinx, sphinx-autodoc-typehints, sphinx_rtd_theme, myst_parser" + } + } + }, + "DrMattG/SDGsR": { + "url": "https://github.com/DrMattG/SDGsR", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P009": { + "source_file": "codemeta.json", + "description": "codeRepository points to homepage instead of repository: https://drmattg.github.io/SDGsR/" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: jsonlite, here, readr, dplyr, tidyr" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/DrMattG/SDGsR/fa1898e88b9a31a05c2b722f36d6993595536a12/LICENSE.md" + } + } + }, + "Duke-GCB/calrissian": { + "url": "https://github.com/Duke-GCB/calrissian", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.16.0' does not match release version '0.18.1'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: hatchling" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2023-10-23T00:00:00' is outdated compared to repository date '2026-02-12T01:16:54'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Python" + } + } + }, + "EDIorg/ecocomDP": { + "url": "https://github.com/EDIorg/ecocomDP", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: RColorBrewer, data.table, dplyr, geosphere, ggplot2, httr, lubridate, magrittr, methods, rlang, rmarkdown, stats, stringr, tidyr, tools, utils, uuid, xml2, neonOS" + } + } + }, + "ElektraInitiative/libelektra": { + "url": "https://github.com/ElektraInitiative/libelektra", + "pitfalls": { + "P001": { + "source_file": "codemeta.json; package.json; pom.xml", + "description": "version '0.8.17' does not match release version '0.10.0'; version '2.0.0' does not match release version '0.10.0'; version '0.0.1-SNAPSHOT' does not match release version '0.10.0'" + }, + "P006": { + "source_file": "package.json", + "description": "License points to local file instead of license name: 'SEE LICENSE IN ../../../LICENSE.md'" + }, + "P009": { + "source_file": "setup.py", + "description": "codeRepository points to homepage instead of repository: https://www.libelektra.org" + }, + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'BSD'" + }, + "P016": { + "source_file": "", + "description": "the correct URL is https://github.com/ElektraInitiative/libelektra, and the one found in codemeta.json is https://www.libelektra.org" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.8.17' does not match version '2.0.0' in package.json" + } + }, + "warnings": { + "W001": { + "source_file": "package.json", + "description": "contains software requirements without versions: wheel" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2016-07-23T00:00:00' is outdated compared to repository date '2026-05-11T09:01:19'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "identifier field is empty or missing" + }, + "W010": { + "source_file": "package.json", + "description": "codeRepository uses Git shorthand instead of full URL: 'github:ElektraInitiative/libelektra'" + } + } + }, + "FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization": { + "url": "https://github.com/FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: gcc, cMake, swh:1:dir:cc83fa70d755c8bae509b3c9eb56cb3a8e7a339e;origin=https://gitlab.inria.fr/paradiseo/paradiseo;visit=swh:1:snp:ab929bf560e9d1ad33143b73d38434e900f01858;anchor=swh:1:rev:c2a3ed4e7f67772afb37ea325c9ef80fca2b008d" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2023-11-20T00:00:00' is outdated compared to repository date '2024-06-11T13:07:36'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C++" + }, + "W005": { + "source_file": "codemeta.json", + "description": "Multiple requirements written as single string: 'swh:1:dir:cc83fa70d755c8bae509b3c9eb56cb3a8e7a339e;origin=https://gitlab.inria.fr/paradiseo/paradiseo;visit=swh:1:snp:ab929bf560e9d1ad33143b73d38434e900f01858;anchor=swh:1:rev:c2a3ed4e7f67772afb37ea325c9ef80fca2b008d'" + } + } + }, + "FairRootGroup/DDS": { + "url": "https://github.com/FairRootGroup/DDS", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version 'master' does not match release version '3.17'" + } + }, + "warnings": {} + }, + "FairRootGroup/FairMQ": { + "url": "https://github.com/FairRootGroup/FairMQ", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version 'master' does not match release version '1.10.0'" + }, + "P006": { + "source_file": "codemeta.json", + "description": "License points to local file instead of license name: './COPYRIGHT'" + } + }, + "warnings": {} + }, + "HumanBrainProject/kg-core-sdks": { + "url": "https://github.com/HumanBrainProject/kg-core-sdks", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "version '0.9.20' does not match version '0.9.7' in package.json" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: requests, pydantic, jinja2" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-11-21T00:00:00' is outdated compared to repository date '2026-01-24T14:06:50'" + } + } + }, + "IBM/multi-variate-parallel-transformer": { + "url": "https://github.com/IBM/multi-variate-parallel-transformer", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: mgzip, pathtools, antlr4-python3-runtime, wheel, typing-extensions, maturin, hjson, ninja, msgpack, py-cpuinfo" + } + } + }, + "JSadowska/testLille": { + "url": "https://github.com/JSadowska/testLille", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Python" + } + } + }, + "Kaffeegangster/tclf": { + "url": "https://github.com/Kaffeegangster/tclf", + "pitfalls": { + "P006": { + "source_file": "pyproject.toml", + "description": "License points to local file instead of license name: 'License file: LICENSE.txt'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: numpy, pandas, scikit-learn" + } + } + }, + "KonradHoeffner/rickview": { + "url": "https://github.com/KonradHoeffner/rickview", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "Identifier uses bare DOI instead of full URL: '10.5281/zenodo.8290117'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Rust" + } + } + }, + "LDEO-CREW/Pythonic-DISORT": { + "url": "https://github.com/LDEO-CREW/Pythonic-DISORT", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: numpy, scipy, ipython, matplotlib, sphinx, nbsphinx, python_docs_theme" + } + } + }, + "LanguageMachines/foliautils": { + "url": "https://github.com/LanguageMachines/foliautils", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: icu, libxml2, ticcutils, libfolia" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C++" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'foliautils'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "LanguageMachines/frog": { + "url": "https://github.com/LanguageMachines/frog", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: icu, libxml2, ticcutils, timbl, libfolia, mbt, ucto" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2023-12-05T00:00:00' is outdated compared to repository date '2026-05-07T10:29:51'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/LanguageMachines/frog/53da3bfd9958af5e7221348607f6db358edef486/README" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C++" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'frog'" + } + } + }, + "LanguageMachines/ucto": { + "url": "https://github.com/LanguageMachines/ucto", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: icu, libxml2, ticcutils, libfolia" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2025-12-11T00:00:00' is outdated compared to repository date '2026-02-09T12:18:49'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C++" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'ucto'" + } + } + }, + "Mariizero/ECGRat": { + "url": "https://github.com/Mariizero/ECGRat", + "pitfalls": {}, + "warnings": {} + }, + "Miagarciaru/atlas-outreach-data-tools-for-lumi36": { + "url": "https://github.com/Miagarciaru/atlas-outreach-data-tools-for-lumi36", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: Python, ROOT" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2021-09-01T00:00:00' is outdated compared to repository date '2025-04-02T14:39:02'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C++, bash" + } + } + }, + "MiguelRodo/Slides24STA5069Z": { + "url": "https://github.com/MiguelRodo/Slides24STA5069Z", + "pitfalls": { + "P001": { + "source_file": "DESCRIPTION; codemeta.json", + "description": "version '3.4.0-1' does not match release version 'slides-2025'; version '0.0.0.1' does not match release version 'slides-2025'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.0.0.1' does not match version '3.4.0-1' in DESCRIPTION" + } + }, + "warnings": {} + }, + "MolSSI/QCEngine": { + "url": "https://github.com/MolSSI/QCEngine", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.32' does not match release version '0.50.0rc1'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Python" + } + } + }, + "Neplex/ArchiTXT": { + "url": "https://github.com/Neplex/ArchiTXT", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: benepar, benepar, langchain-core, langchain-huggingface, levenshtein, levenshtein, more-itertools, more-itertools, streamlit-agraph, streamlit-tags, typing-extensions, typing-extensions, unidecode, unidecode" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Python" + }, + "W005": { + "source_file": "codemeta.json", + "description": "Multiple requirements written as single string: 'aiostream==>=0.7,<0.8'" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'ArchiTXT'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#wip" + } + } + }, + "Neplex/COveR": { + "url": "https://github.com/Neplex/COveR", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2017-12-06T00:00:00' is outdated compared to repository date '2026-05-21T08:49:11'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C, R" + } + } + }, + "NeuralEnsemble/PyNN": { + "url": "https://github.com/NeuralEnsemble/PyNN", + "pitfalls": { + "P001": { + "source_file": "codemeta.json; pyproject.toml", + "description": "version '0.12.4' does not match release version '0.12.1'; version '0.12.4' does not match release version '0.12.1'" + }, + "P012": { + "source_file": "codemeta.json", + "description": "downloadURL is outdated or invalid: https://files.pythonhosted.org/packages/f2/04/371f66ed8175e41a3d5ee04d957f6253e378cc4616b485e4c6a1b9f27626/pynn-0.12.4.tar.gz" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: at least one of the supported simulators: e.g. NEURON, NEST, or Brian., morphio, setuptools" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2025-04-02T00:00:00' is outdated compared to repository date '2026-05-06T09:40:39'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Python" + }, + "W005": { + "source_file": "codemeta.json", + "description": "Multiple requirements written as single string: 'at least one of the supported simulators: e.g. NEURON, NEST, or Brian.'" + } + } + }, + "PRIDE-Archive/pridepy": { + "url": "https://github.com/PRIDE-Archive/pridepy", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: ratelimit, click, pytest, setuptools, boto3, botocore, tqdm, urllib3, httpx, requests" + } + } + }, + "Pakillo/grateful": { + "url": "https://github.com/Pakillo/grateful", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: desc, knitr, remotes, renv, rmarkdown, rstudioapi, utils" + } + } + }, + "ParaStation/psmpi": { + "url": "https://github.com/ParaStation/psmpi", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "version '2.8.0' does not match version '1.0.0' in package.json" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: pytest, pytest-xdist, pytest-html, pyyaml, retrying, junitparser" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2022-07-05T00:00:00' is outdated compared to repository date '2026-04-28T16:13:04'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C" + } + } + }, + "R3BRootGroup/sofia": { + "url": "https://github.com/R3BRootGroup/sofia", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version 'sep25' does not match release version 'dec25'" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: FairRoot, FairSoft, R3BRoot" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2025-09-15T00:00:00' is outdated compared to repository date '2025-12-31T17:53:21'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C++, C" + }, + "W005": { + "source_file": "codemeta.json", + "description": "Multiple requirements written as single string: 'FairRoot, FairSoft, R3BRoot'" + } + } + }, + "Rbfinch/grepq": { + "url": "https://github.com/Rbfinch/grepq", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '1.4.1' does not match release version 'grepq-v1.6.5'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version 'v1.4.1' does not match version '1.6.5' in Cargo.toml" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2025-01-17T00:00:00' is outdated compared to repository date '2026-04-28T08:34:01'" + } + } + }, + "SeUniVr/PLC-RE": { + "url": "https://github.com/SeUniVr/PLC-RE", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: pandas, ray, json, modbus_tk, logging, itertools, scipy, glob2, numpy, matplotlib" + } + } + }, + "SedFoam/sedfoam": { + "url": "https://github.com/SedFoam/sedfoam", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: OpenFoam (ESI version)" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2022-07-08T00:00:00' is outdated compared to repository date '2026-05-14T07:21:25'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C++, OpenFoam" + } + } + }, + "Simple-Robotics/proxsuite": { + "url": "https://github.com/Simple-Robotics/proxsuite", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: numpy, scipy, cmeel[build], cmeel-eigen, cmeel-simde, typing-extensions" + } + } + }, + "Unknown": { + "url": "https://gricad-gitlab.univ-grenoble-alpes.fr/bidegarb/nautil", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: Maple" + }, + "W004": { + "source_file": "", + "description": "Programming languages in metadata do not have version specifications" + } + } + }, + "aaronmck/Badread": { + "url": "https://github.com/aaronmck/Badread", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'GPL v3.0'" + }, + "P016": { + "source_file": "", + "description": "the correct URL is https://github.com/aaronmck/Badread, and the one found in codemeta.json is https://github.com/rrwick/Badread" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: edlib, numpy, matplotlib, scipy" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2019-03-01T00:00:00' is outdated compared to repository date '2021-11-20T03:09:52'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "identifier field is empty or missing" + } + } + }, + "ajpelu/likelihoodTools": { + "url": "https://github.com/ajpelu/likelihoodTools", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.1.0' does not match version '1.0.0' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: dplyr, ggplot2, rlang" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/ajpelu/likelihoodTools/e0d8fdb5b69d27a641ffc4731e8c2e5b6a21b67c/LICENSE.md" + } + } + }, + "amd/mumps-build": { + "url": "https://github.com/amd/mumps-build", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "Identifier uses bare DOI instead of full URL: '10.1145/3242094'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C, Fortran" + } + } + }, + "andrew-saydjari/mfouesneau.github.com": { + "url": "https://github.com/andrew-saydjari/mfouesneau.github.com", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: wheel" + } + } + }, + "aravind-j/EvaluateCore": { + "url": "https://github.com/aravind-j/EvaluateCore", + "pitfalls": { + "P001": { + "source_file": "codemeta.json; codemeta.json; DESCRIPTION", + "description": "version '0.1.3.9000' does not match release version 'CRAN_0.1.4'; version '0.1.3.9000' does not match release version 'CRAN_0.1.4'; version '0.1.4.9000' does not match release version 'CRAN_0.1.4'" + }, + "P009": { + "source_file": "DESCRIPTION", + "description": "codeRepository points to homepage instead of repository: https://github.com/aravind-j/EvaluateCore\n https://CRAN.R-project.org/package=EvaluateCore\n https://aravind-j.github.io/EvaluateCore/\n https://doi.org/10.5281/zenodo.3875930" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.1.3.9000' does not match version '0.1.4.9000' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: agricolae, boot, car, cluster, dplyr, entropy, ggcorrplot, ggplot2, ggtext, grDevices, gridExtra, kSamples, mathjaxr, missMDA, psych, reshape2, Rdpack, stats, tibble, vegan" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: R" + } + } + }, + "assume-framework/assume": { + "url": "https://github.com/assume-framework/assume", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.5.5' does not match release version '0.6.0'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: highspy" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2025-11-12T00:00:00' is outdated compared to repository date '2026-05-21T13:35:17'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/assume-framework/assume/aaa904c603ef267aaab6872d67cd87affcb17688/README.md" + } + } + }, + "barbagroup/PetIBM": { + "url": "https://github.com/barbagroup/PetIBM", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.3' does not match release version '0.5.4'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2017-01-25T00:00:00' is outdated compared to repository date '2026-05-21T03:09:20'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "identifier field is empty or missing" + } + } + }, + "bernd-mueller/snoke": { + "url": "https://github.com/bernd-mueller/snoke", + "pitfalls": { + "P001": { + "source_file": "pom.xml", + "description": "version '1.0-SNAPSHOT' does not match release version '1.1'" + }, + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'https://spdx.org/licenses/CC-BY-NC-SA-4.0'" + }, + "P014": { + "source_file": "codemeta.json", + "description": "Identifier uses bare DOI instead of full URL: '10.5281/zenodo.4680086\t'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '1.1' does not match version '1.0-SNAPSHOT' in pom.xml" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: Java 8" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2021-02-19T00:00:00' is outdated compared to repository date '2026-02-06T13:12:05'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Java" + } + } + }, + "bioconductor-source/treeio": { + "url": "https://github.com/bioconductor-source/treeio", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "version '1.3.12' does not match version '1.29.1' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: ape, ape, dplyr, dplyr, jsonlite, jsonlite, magrittr, magrittr, methods, methods, rlang, stats, tibble, tibble, utils, rvcheck" + }, + "W004": { + "source_file": "", + "description": "Programming languages in metadata do not have version specifications" + } + } + }, + "brmanuel/calliope": { + "url": "https://github.com/brmanuel/calliope", + "pitfalls": { + "P009": { + "source_file": "setup.py", + "description": "codeRepository points to homepage instead of repository: https://www.callio.pe/" + }, + "P016": { + "source_file": "", + "description": "the correct URL is https://github.com/brmanuel/calliope, and the one found in codemeta.json is https://github.com/calliope-project/calliope" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2018-06-04T00:00:00' is outdated compared to repository date '2022-11-23T01:55:35'" + } + } + }, + "c-torre/replication-recanatesi-2015": { + "url": "https://github.com/c-torre/replication-recanatesi-2015", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W004": { + "source_file": "", + "description": "Programming languages in metadata do not have version specifications" + } + } + }, + "caltechlibrary/admin-shell-scripts": { + "url": "https://github.com/caltechlibrary/admin-shell-scripts", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: make, pandoc, mysql, makepasswd, jq" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2022-10-19T00:00:00' is outdated compared to repository date '2025-08-06T22:10:12'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Bash, Make" + } + } + }, + "capstone-insper/drone-swarm-search": { + "url": "https://github.com/capstone-insper/drone-swarm-search", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '1.0.3' does not match release version '0.2.6'" + } + }, + "warnings": { + "W001": { + "source_file": "package.json", + "description": "contains software requirements without versions: wheel, h5py, xarray, python-dotenv" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-04-25T00:00:00' is outdated compared to repository date '2026-05-15T17:16:03'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "identifier field is empty or missing" + } + } + }, + "caseyyoungflesh/MCMCvis": { + "url": "https://github.com/caseyyoungflesh/MCMCvis", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: coda, rstan, methods, overlapping, colorspace" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'MCMCvis'" + } + } + }, + "cristal-smac/ipd": { + "url": "https://github.com/cristal-smac/ipd", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: Python 3" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2023-12-14T00:00:00' is outdated compared to repository date '2026-03-13T13:29:03'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/cristal-smac/ipd/40c86c7f7ad51599ed402ab03bbfad398d4cce61/README.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Python" + } + } + }, + "damiendevienne/phylter": { + "url": "https://github.com/damiendevienne/phylter", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: ape, ggplot2, reshape2, Rfast, RSpectra, stats, utils" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "dbbs-lab/bsb": { + "url": "https://github.com/dbbs-lab/bsb", + "pitfalls": { + "P001": { + "source_file": "pyproject.toml", + "description": "version '1.0.0' does not match release version '7.3.1'" + }, + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '7.3.1' does not match version '1.0.0' in pyproject.toml" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: hatchling" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2026-04-16T00:00:00' is outdated compared to repository date '2026-05-05T18:14:57'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Python" + } + } + }, + "dynamicslab/pysindy": { + "url": "https://github.com/dynamicslab/pysindy", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '1.2.3' does not match release version '2.1.0'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: scipy, typing_extensions, setuptools, setuptools-scm" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2021-10-21T00:00:00' is outdated compared to repository date '2026-05-21T17:35:55'" + } + } + }, + "electronicvisions/releases-ebrains": { + "url": "https://github.com/electronicvisions/releases-ebrains", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "Identifier uses bare DOI instead of full URL: '10.5281/ZENODO.8375522'" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: cf. EBRAINS Software Distribution: `spack spec pynn-brainscales hxtorch jaxsnn`" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2026-02-19T00:00:00' is outdated compared to repository date '2026-05-05T13:41:45'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C++, C, SystemVerilog" + } + } + }, + "felixsc1/COSplay": { + "url": "https://github.com/felixsc1/COSplay", + "pitfalls": { + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'BSD'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2018-02-16T00:00:00' is outdated compared to repository date '2018-03-14T08:58:19'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "identifier field is empty or missing" + } + } + }, + "fhdsl/conrad": { + "url": "https://github.com/fhdsl/conrad", + "pitfalls": { + "P001": { + "source_file": "DESCRIPTION", + "description": "version '1.0.0.9000' does not match release version '1.0.0'" + }, + "P010": { + "source_file": "LICENSE", + "description": "file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '1.0.0' does not match version '1.0.0.9000' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: httr2, jsonlite, magrittr" + } + } + }, + "fran2410/AI-Open-Science": { + "url": "https://github.com/fran2410/AI-Open-Science", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: mkdocs-material" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2025-02-26T00:00:00' is outdated compared to repository date '2025-02-28T11:09:54'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Python, Dockerfile" + } + } + }, + "gavinsimpson/data.adapt.multi.test": { + "url": "https://github.com/gavinsimpson/data.adapt.multi.test", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "version 'v0.2.0' does not match version '0.2.0' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: tmle, foreach, parallel, doParallel, SuperLearner, calibrate, magrittr, R2HTML" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2016-11-21T00:00:00' is outdated compared to repository date '2017-03-20T21:45:15'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "identifier field is empty or missing" + } + } + }, + "gemini3d/gemini3d": { + "url": "https://github.com/gemini3d/gemini3d", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "Identifier uses bare DOI instead of full URL: '10.5281/zenodo.3813224'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Fortran, Python" + } + } + }, + "geospace-code/pymap3d": { + "url": "https://github.com/geospace-code/pymap3d", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "Identifier uses bare DOI instead of full URL: '10.21105/joss.00580'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: wheel" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Python" + } + } + }, + "grycap/im-client": { + "url": "https://github.com/grycap/im-client", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P015": { + "source_file": "codemeta.json", + "description": "Continuous integration URL returns unknown: https://jenkins.i3m.upv.es/job/grycap/job/im-client-unit-master/" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: radl, netaddr, requests" + } + } + }, + "iljah/hdintegrator": { + "url": "https://github.com/iljah/hdintegrator", + "pitfalls": {}, + "warnings": {} + }, + "instatdealii/idealii": { + "url": "https://github.com/instatdealii/idealii", + "pitfalls": { + "P008": { + "source_file": "codemeta.json", + "description": "Software requirements contain invalid URLs: www.github.com/dealii/dealii" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: www.github.com/dealii/dealii" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-08-15T00:00:00' is outdated compared to repository date '2025-10-13T13:52:44'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C++, CMake, Hack" + } + } + }, + "jonas-ellert/linear-time-runs": { + "url": "https://github.com/jonas-ellert/linear-time-runs", + "pitfalls": {}, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C++" + } + } + }, + "jvegreg/ESMValCore": { + "url": "https://github.com/jvegreg/ESMValCore", + "pitfalls": { + "P009": { + "source_file": "setup.py", + "description": "codeRepository points to homepage instead of repository: https://www.esmvaltool.org" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: fiona, pandas, wheel, autodocsumm, dask[array], esgf-pyclient, humanfriendly, importlib_resources, isodate, jinja2, netCDF4, numpy, pillow, prov, pybtex, pyyaml, scipy, shapely[vectorized], yamale" + } + } + }, + "khinsen/MMTK": { + "url": "https://github.com/khinsen/MMTK", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '2.7.13' does not match release version 'rel2.7.13'" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: https://numpy.org/, https://github.com/khinsen/ScientificPython/" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2023-02-17T00:00:00' is outdated compared to repository date '2025-12-09T04:15:15'" + }, + "W004": { + "source_file": "", + "description": "Programming languages in metadata do not have version specifications" + } + } + }, + "lecfab/rescience-gorder": { + "url": "https://github.com/lecfab/rescience-gorder", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: matplotlib, numpy, linux-perf" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C++, Bash" + } + } + }, + "m-team-kit/cookiecutter-web": { + "url": "https://github.com/m-team-kit/cookiecutter-web", + "pitfalls": { + "P001": { + "source_file": "package.json", + "description": "version '0.1.0' does not match release version '1.2.0'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Javascript, Python" + } + } + }, + "matthiasprobst/h5RDMtoolbox": { + "url": "https://github.com/matthiasprobst/h5RDMtoolbox", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: wheel" + } + } + }, + "matthiasprobst/pivmetalib": { + "url": "https://github.com/matthiasprobst/pivmetalib", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: wheel" + } + } + }, + "mdstephenserdc/network_representativeness": { + "url": "https://github.com/mdstephenserdc/network_representativeness", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": {} + }, + "megasanjay/testrepository": { + "url": "https://github.com/megasanjay/testrepository", + "pitfalls": {}, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Ada, C++" + } + } + }, + "mia-jinns/jinns": { + "url": "https://github.com/mia-jinns/jinns", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: matplotlib, jaxtyping, setuptools, setuptools-scm" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-10-08T00:00:00' is outdated compared to repository date '2026-05-13T11:45:57'" + }, + "W004": { + "source_file": "", + "description": "Programming languages in metadata do not have version specifications" + } + } + }, + "mikldk/mitolina": { + "url": "https://github.com/mikldk/mitolina", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'GPL v2.0'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: methods" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2019-02-18T00:00:00' is outdated compared to repository date '2022-01-19T12:39:43'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "identifier field is empty or missing" + } + } + }, + "ms609/Quartet": { + "url": "https://github.com/ms609/Quartet", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: ape, lifecycle, PlotTools, viridisLite" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'Quartet'" + } + } + }, + "ms609/TreeDist": { + "url": "https://github.com/ms609/TreeDist", + "pitfalls": { + "P001": { + "source_file": "codemeta.json; DESCRIPTION", + "description": "version '2.14.0.9000' does not match release version '2.14.0'; version '2.14.0.9000' does not match release version '2.14.0'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: stats, colorspace, shiny, shinyjs" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'TreeDist'" + } + } + }, + "ms609/TreeSearch": { + "url": "https://github.com/ms609/TreeSearch", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: abind, base64enc, cluster, colorspace, fastmap, fs, future, PlotTools, promises, protoclust, Rcpp, shinyjs, stats, stringi" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'TreeSearch'" + } + } + }, + "munich-quantum-toolkit/core": { + "url": "https://github.com/munich-quantum-toolkit/core", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '3.0.0' does not match release version '3.6.1'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-11-07T00:00:00' is outdated compared to repository date '2026-05-21T12:30:23'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "identifier field is empty or missing" + } + } + }, + "naaci/watermarking": { + "url": "https://github.com/naaci/watermarking", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: scipy, scipy, numpy, pywavelets" + } + } + }, + "nazar-mykolyshyn/TikTok-Api": { + "url": "https://github.com/nazar-mykolyshyn/TikTok-Api", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: requests, playwright, selenium_stealth, selenium" + } + } + }, + "neuronsimulator/nrn": { + "url": "https://github.com/neuronsimulator/nrn", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: Bison, Flex, C/C++ compiler, find-libpython, setuptools" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2025-11-17T00:00:00' is outdated compared to repository date '2026-05-21T15:25:21'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C++" + } + } + }, + "peterpolidoro/kicad_bom": { + "url": "https://github.com/peterpolidoro/kicad_bom", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: setuptools" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-05-09T00:00:00' is outdated compared to repository date '2024-08-27T20:25:24'" + } + } + }, + "peterpolidoro/kicad_netlist_reader": { + "url": "https://github.com/peterpolidoro/kicad_netlist_reader", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: setuptools" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2023-03-29T00:00:00' is outdated compared to repository date '2024-12-10T20:08:57'" + } + } + }, + "phreppo/bait": { + "url": "https://github.com/phreppo/bait", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P016": { + "source_file": "", + "description": "the correct URL is https://github.com/phreppo/bait, and the one found in codemeta.json is git+https://github.com/parof/bait" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2021-04-26T00:00:00' is outdated compared to repository date '2022-05-17T04:25:30'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: Java" + } + } + }, + "proycon/colibri-core": { + "url": "https://github.com/proycon/colibri-core", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: wheel, Cython" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C++, Cython" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'colibricore'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "r-spatialecology/landscapemetrics": { + "url": "https://github.com/r-spatialecology/landscapemetrics", + "pitfalls": { + "P009": { + "source_file": "codemeta.json", + "description": "codeRepository points to homepage instead of repository: https://r-spatialecology.github.io/landscapemetrics/" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: cli, ggplot2, methods, stats, terra, tibble" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/r-spatialecology/landscapemetrics/9e777a5c5ec568ebca8f5ddec7bed1c2d465a357/LICENSE.md" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'landscapemetrics'" + } + } + }, + "rOpenGov/r311": { + "url": "https://github.com/rOpenGov/r311", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.4.3' does not match release version '0.4.4'" + }, + "P010": { + "source_file": "LICENSE", + "description": "file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.4.3' does not match version '0.4.4' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: curl, jsonlite, tools, utils" + } + } + }, + "rcsb/py-rcsbsearchapi": { + "url": "https://github.com/rcsb/py-rcsbsearchapi", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: tqdm" + } + } + }, + "riatelab/tanaka": { + "url": "https://github.com/riatelab/tanaka", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: terra, sf, mapiso, maplegend, grDevices, graphics" + } + } + }, + "rism-digital/verovio": { + "url": "https://github.com/rism-digital/verovio", + "pitfalls": { + "P001": { + "source_file": "pyproject.toml", + "description": "version '0.1.0' does not match release version 'ersion-6.2.0'" + }, + "P009": { + "source_file": "setup.py", + "description": "codeRepository points to homepage instead of repository: https://www.verovio.org" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '6.3.0-dev' does not match version '0.1.0' in pyproject.toml" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: C++, Python, JavaScript, Java" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'Verovio'" + } + } + }, + "ropensci/CoordinateCleaner": { + "url": "https://github.com/ropensci/CoordinateCleaner", + "pitfalls": { + "P001": { + "source_file": "DESCRIPTION; codemeta.json", + "description": "version '3.0.1' does not match release version '2.0-4'; version '2.0.20' does not match release version '2.0-4'" + }, + "P008": { + "source_file": "codemeta.json", + "description": "Software requirements contain invalid URLs: https://sysreqs.r-hub.io/get/gdal" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '2.0.20' does not match version '3.0.1' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: dplyr, dplyr, geosphere, geosphere, ggplot2, ggplot2, graphics, graphics, grDevices, grDevices, methods, methods, rgbif, rgbif, stats, stats, terra, tidyselect, tidyselect, utils, utils, raster, rgeos, rgdal, rnaturalearth, sp, https://sysreqs.r-hub.io/get/gdal, https://sysreqs.r-hub.io/get/libgdal" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'CoordinateCleaner'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "ropensci/USAboundariesData": { + "url": "https://github.com/ropensci/USAboundariesData", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.5.0' does not match release version '0.5.1'" + }, + "P013": { + "source_file": "DESCRIPTION", + "description": "License does not specify version: 'CC BY-NC-SA 4.0'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.5.0' does not match version '0.5.1' in DESCRIPTION" + } + }, + "warnings": {} + }, + "ropensci/geojson": { + "url": "https://github.com/ropensci/geojson", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.3.4' does not match version '0.3.5.9000' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: methods, methods, sp, sp, magrittr, magrittr, lazyeval, lazyeval" + } + } + }, + "ropensci/tradestatistics": { + "url": "https://github.com/ropensci/tradestatistics", + "pitfalls": { + "P009": { + "source_file": "codemeta.json", + "description": "codeRepository points to homepage instead of repository: https://docs.ropensci.org/tradestatistics/" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '4.4.0' does not match version '5.0.0' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: crul, data.table, digest, jsonlite, memoise, utils" + } + } + }, + "sep-developers/sep": { + "url": "https://github.com/sep-developers/sep", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '1.0.0' does not match release version '1.4.1'" + }, + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'LGPL v3.0'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: wheel, Cython" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2016-09-30T00:00:00' is outdated compared to repository date '2026-05-01T12:59:54'" + } + } + }, + "sillyplots/spotifyr": { + "url": "https://github.com/sillyplots/spotifyr", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: dplyr, purrr, httr, lubridate, jsonlite, readr, rvest, stringr, tibble, janitor, rlang, magrittr, assertthat, xml2" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'spotifyr'" + } + } + }, + "sje30/rescience-hor": { + "url": "https://github.com/sje30/rescience-hor", + "pitfalls": {}, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: R" + } + } + }, + "sorokinvld/LLFn": { + "url": "https://github.com/sorokinvld/LLFn", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: poetry-core" + } + } + }, + "sourmash-bio/sourmash": { + "url": "https://github.com/sourmash-bio/sourmash", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '1.0.0' does not match release version '4.9.4'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version 'v1.0.0' does not match version '4.9.5-dev' in pyproject.toml" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: numpy, matplotlib, scipy, cffi, -e .[all]" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2016-06-07T00:00:00' is outdated compared to repository date '2026-05-18T20:38:45'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "identifier field is empty or missing" + } + } + }, + "sscu-budapest/lead-contamination-hungary": { + "url": "https://github.com/sscu-budapest/lead-contamination-hungary", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: datazimmer" + } + } + }, + "sthanhe/ParticleDispersion": { + "url": "https://github.com/sthanhe/ParticleDispersion", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": {} + }, + "tesselle/kairos": { + "url": "https://github.com/tesselle/kairos", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P009": { + "source_file": "codemeta.json", + "description": "codeRepository points to homepage instead of repository: https://codeberg.org/tesselle/kairos" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '2.3.0' does not match version '2.3.0.9000' in DESCRIPTION" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: extraDistr, grDevices, methods, stats, utils" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/tesselle/kairos/113e0be3cc9beb2895f0ff5ac95063aad219b536/LICENSE.md" + }, + "W006": { + "source_file": "metadata files", + "description": "Identifier is a name instead of valid unique identifier: 'kairos'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "tvwenger/bayes_spec": { + "url": "https://github.com/tvwenger/bayes_spec", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version 'unknown' does not match release version '1.9.0'" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "contains software requirements without versions: jupyter, ipykernel, ipywidgets, numpy, pytensor, nutpie, numba, matplotlib, scipy, scikit-learn, graphviz, jaxlib, jax, blackjax, numpyro, setuptools, arviz" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-08-15T00:00:00' is outdated compared to repository date '2025-10-30T14:25:24'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "identifier field is empty or missing" + } + } + }, + "umr-amap/StormR": { + "url": "https://github.com/umr-amap/StormR", + "pitfalls": { + "P001": { + "source_file": "DESCRIPTION; codemeta.json", + "description": "version '0.2.1' does not match release version '0.2.4'; version '0.2.2' does not match release version '0.2.4'" + }, + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version '0.2.2' does not match version '0.2.1' in DESCRIPTION" + }, + "P018": { + "source_file": "codemeta.json", + "description": "Identifier uses raw SWHID without resolvable URL: 'swh:1:dir:aa216059c9fd003bb41938788ff4608e59a49684'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: graphics, leaflet, maps, methods, ncdf4, rworldmap, sf, stringr, terra, utils, zoo, zoo, graphics, maps, methods, ncdf4, rworldmap, sf, stringr, terra, utils" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2024-09-04T00:00:00' is outdated compared to repository date '2026-04-09T09:51:19'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/umr-amap/StormR/0f179f94caac8ee075473472cb0474f54e745947/LICENSE.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "Programming languages without versions: R" + } + } + }, + "underworldcode/underworld2": { + "url": "https://github.com/underworldcode/underworld2", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '1.0.0' does not match release version '2.16.4'" + }, + "P006": { + "source_file": "pyproject.toml", + "description": "License points to local file instead of license name: 'License file: ./LICENSE.md'" + }, + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'GPL v3.0'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: mpi4py, h5py, pint, scipy, setuptools, ninja, ." + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2018-12-07T00:00:00' is outdated compared to repository date '2026-05-18T01:16:41'" + }, + "W003": { + "source_file": "", + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/underworldcode/underworld2/a017a16c73c7c8bbb2869ceb05080c5c5098ac8e/LICENSE.md" + } + } + }, + "vc1492a/PyNomaly": { + "url": "https://github.com/vc1492a/PyNomaly", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "version '0.2.0' does not match release version '0.3.5'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "dateModified '2018-05-07T00:00:00' is outdated compared to repository date '2026-05-16T16:32:24'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "identifier field is empty or missing" + } + } + }, + "viznuv/transforEmotion": { + "url": "https://github.com/viznuv/transforEmotion", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: dplyr, googledrive, LSAfun, Matrix, methods, pbapply, remotes, reticulate" + } + } + }, + "yt-project/unyt": { + "url": "https://github.com/yt-project/unyt", + "pitfalls": { + "P001": { + "source_file": "codemeta.json; pyproject.toml", + "description": "version '1.0.7' does not match release version '3.1.0'; version '3.1.0.dev0' does not match release version '3.1.0'" + }, + "P013": { + "source_file": "codemeta.json", + "description": "License does not specify version: 'BSD'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version 'v1.0.7' does not match version '3.1.0.dev0' in pyproject.toml" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "contains software requirements without versions: numpy, sympy, matplotlib, sphinx" + }, + "W002": { + "source_file": "metadata files", + "description": "dateModified '2018-08-13T00:00:00' is outdated compared to repository date '2026-05-12T13:04:16'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "identifier field is empty or missing" + } + } + } +} \ No newline at end of file diff --git a/BACKUP/ground_truth/summary_pitfalls_warnings.json b/BACKUP/ground_truth/summary_pitfalls_warnings.json new file mode 100644 index 0000000..be9f631 --- /dev/null +++ b/BACKUP/ground_truth/summary_pitfalls_warnings.json @@ -0,0 +1,2072 @@ +{ + "repo_1": { + "url": "https://github.com/ComputationalGenomics/Reveal", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "245b109d77370eec2eb7c4dce0370638887aa7c6" + }, + "repo_2": { + "url": "https://github.com/damiendevienne/phylter", + "warnings": { + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" + } + }, + "commit ID": "4d74241169be3882da9d5f08da47bd40604764eb" + }, + "repo_3": { + "url": "https://github.com/gavinsimpson/data.adapt.multi.test", + "pitfalls": { + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository does not point to the same repository" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W007": { + "source_file": "codemeta.json", + "description": "Identifier is empty" + } + }, + "commit ID": "b33e222ddb9e05da62afb0bbfd88bd8a3567ac89" + }, + "repo_4": { + "url": "https://github.com/FairRootGroup/FairMQ", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "Version does not correspond to the version used in the latest release" + }, + "P006": { + "source_file": "codemeta.json", + "description": "License pointing to a local file instead of stating the name. For example: \u201clicense\u201d: LICENSE.MD" + } + }, + "warnings": {}, + "commit ID": "fa64faf3f755e9b00e0af738826718bf5117c8ea" + }, + "repo_5": { + "url": "https://github.com/neuronsimulator/nrn", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "aba5057b527587f1ca9a43b772edf47346d41e5a" + }, + "repo_6": { + "url": "https://github.com/gabrielblain/CropWaterBalance", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "Version does not correspond to the version used in the latest release" + }, + "P015": { + "source_file": "codemeta.json", + "description": "contIntegration link returns 404" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "6b6a27d027b3508b62aff062cb8fd66f3942951e" + }, + "repo_7": { + "url": "https://github.com/instatdealii/idealii", + "pitfalls": { + "P008": { + "source_file": "codemeta.json", + "description": "softwareRequirement points to an invalid page" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "8f6d66b22dfcf276cce0eb275f46fdb2f6c5d59e" + }, + "repo_8": { + "url": "https://github.com/sillyplots/spotifyr", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "The file does not have any specific license except for copyright" + } + }, + "warnings": { + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + } + }, + "commit ID": "68bc0ae54ee5f727b9ff6b70483f9b4b1fddaf3e" + }, + "repo_9": { + "url": "https://github.com/Materials-Data-Science-and-Informatics/dirschema", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" + } + }, + "commit ID": "297c914fa277e2c720ae08a758707ef8ebe51ef6" + }, + "repo_11": { + "url": "https://github.com/gemini3d/gemini3d", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "ee89832c620c05101751759f3fbaf1ba9e7d7b74" + }, + "repo_12": { + "url": "https://github.com/Sprinterzzj/ggstatsplot", + "pitfalls": { + "P015": { + "source_file": "codemeta.json", + "description": "contIntegration link returns 404" + }, + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" + } + }, + "commit ID": "150a4bd2bb66bd1bdbe19eadec3bb6a6f00c66b7" + }, + "repo_13": { + "url": "https://github.com/bioconductor-source/treeio", + "pitfalls": { + "P017": { + "source_file": "codemeta.json & DESCRIPTION", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "df013a97e144086980317527de6fab39dc54e9fa" + }, + "repo_14": { + "url": "https://github.com/Kaffeegangster/tclf", + "pitfalls": { + "P006": { + "source_file": "pyproject.toml", + "description": "License pointing to a local file instead of stating the name. For example: \u201clicense\u201d: LICENSE.MD" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "d44b74f990c3e2d03d9a3ced3a89ffa619b59d63" + }, + "repo_15": { + "url": "https://github.com/BM32ESRF/LaueNN", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "9033ffbf5c5257b0e22289bf6fb175dc678e1c84" + }, + "repo_16": { + "url": "https://github.com/Ruitao-Terry/GA-cal", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + } + }, + "commit ID": "62f5b3a8bcd3ae2e3c3e639bd6ad856d2b001d04" + }, + "repo_17": { + "url": "https://github.com/LanguageMachines/ucto", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + } + }, + "commit ID": "a57692225c4693a4229f7cd74f39465aaa96b4a7" + }, + "repo_18": { + "url": "https://github.com/eebrown/workloopR", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P015": { + "source_file": "codemeta.json", + "description": "contIntegration link returns 404" + }, + "P016": { + "source_file": "codemeta.json", + "description": "codeRepository does not point to the same repository" + } + }, + "warnings": { + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" + } + }, + "commit ID": "51ca63341023a996fecaa6057109aa8c16029b51" + }, + "repo_19": { + "url": "https://gricad-gitlab.univ-grenoble-alpes.fr/bidegarb/nautil/", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "5d60f004a965a016cf40cca42cc696e33296969a" + }, + "repo_20": { + "url": "https://github.com/lecfab/rescience-gorder", + "pitfalls": {}, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "305d28dc1584b152ff981ee81be0de12598b402e" + }, + "repo_21": { + "url": "https://github.com/arthurcuri/flixfinder-tis1", + "pitfalls": {}, + "commit ID": "8771f700fd168e2e6c16a4f85b6631ca6b9c569f" + }, + "repo_22": { + "url": "https://github.com/ComputationalBiomechanicsLab/opensim-creator", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "824222911d158f0ffc6929605f8a925ff08fcf64" + }, + "repo_23": { + "url": "https://github.com/nazar-mykolyshyn/TikTok-Api", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "3973da62a683b34548d07acb48e334ac5b4cfe6d" + }, + "repo_25": { + "url": "https://github.com/peterpolidoro/kicad_netlist_reader", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "SoftwareRequirement don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "1b2108e0a8da04acdb595c724f3272a73f1ab755" + }, + "repo_26": { + "url": "https://github.com/ropensci/geojson", + "pitfalls": { + "P001": { + "source_file": "DESCRIPTION", + "description": "Version does not correspond to the version used in the latest release" + }, + "P010": { + "source_file": "LICENSE", + "description": "The file does not have any specific license except for copyright" + }, + "P017": { + "source_file": "codemeta.json, DESCRIPTION", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "3881c7df07e924b3afce2270b78e316e5e47e79d" + }, + "repo_27": { + "url": "https://github.com/Neplex/ArchiTXT", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" + } + }, + "commit ID": "e82e532453dff78fe5ea2475774be167521c0fca" + }, + "repo_28": { + "url": "https://github.com/NeuralEnsemble/PyNN", + "pitfalls": { + "P001": { + "source_file": "codemeta", + "description": "Version does not correspond to the version used in the latest release" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml ", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "5a53a5144e5c8c739a0ad65435cea23579574a19" + }, + "repo_29": { + "url": "https://github.com/Rbfinch/grepq", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "Version does not correspond to the version used in the latest release" + }, + "P017": { + "source_file": "codemeta.json, Cargo.toml", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W002": { + "source_file": "codemeta.json, ", + "description": "dateModified is outdated" + } + }, + "commit ID": "3251219d23b1242a562a593f4e9f2f98ce797fad" + }, + "repo_30": { + "url": "https://github.com/ms609/TreeSearch", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "Version does not correspond to the version used in the latest release" + }, + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + } + }, + "commit ID": "d4af0fba212c8490e2c0250d3872f4b9e0d630c2" + }, + "repo_31": { + "url": "https://github.com/inbo/archivaltag", + "pitfalls": { + "P003": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "There are more than two authors but only one field for them (\"author\": \"Thomas Boch and Matthieu Baumann\") instead of a list" + }, + "P015": { + "source_file": "codemeta.json", + "description": "contIntegration link returns 404" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" + } + }, + "commit ID": "ad337685076bb7eae906bee4dae6067812564284" + }, + "repo_32": { + "url": "https://github.com/ms609/Quartet", + "pitfalls": {}, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + } + }, + "commit ID": "8b81f549be20f251f71f2be402c5ff6d90dada3f" + }, + "repo_33": { + "url": "https://github.com/tvwenger/bayes_spec", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "Version does not correspond to the version used in the latest release" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W007": { + "source_file": "codemeta.json", + "description": "Identifier is empty" + } + }, + "commit ID": "2dc53e3fc9302b8a40fcaec6384ee152c700590a" + }, + "repo_34": { + "url": "https://github.com/caseyyoungflesh/MCMCvis", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + } + }, + "commit ID": "3c7b05282dbe3b509f2a101e0ac5fd397c283cfa" + }, + "repo_35": { + "url": "https://github.com/sep-developers/sep", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "Version does not correspond to the version used in the latest release" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + } + }, + "commit ID": "93b3ac52e0f6cb26449204dc8bc8c3cf65602f0f" + }, + "repo_36": { + "url": "https://github.com/ropensci/tradestatistics", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P009": { + "source_file": "codemeta.json", + "description": "coderepository points to their homepage" + }, + "P017": { + "source_file": "codemeta.json, DESCRIPTION", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "4c0b85989f0085f4eb4c16eaefab6214b7854b6b" + }, + "repo_37": { + "url": "https://github.com/bioc/BioCor", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "The file does not have any specific license except for copyright" + }, + "P015": { + "source_file": "codemeta.json", + "description": "contIntegration link returns 404" + }, + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "e26910ce2bb0f6e1b4edcde1b0fa925d78c837a0" + }, + "repo_38": { + "url": "https://github.com/ropensci-archive/tidytags", + "pitfalls": { + "P015": { + "source_file": "codemeta.json", + "description": "contIntegration link returns 404" + }, + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "65c40bcb0e6721b55be676c42b524e33ea59885e" + }, + "repo_39": { + "url": "https://github.com/giscience-fsu/sperrorest", + "pitfalls": { + "P015": { + "source_file": "codemeta.json", + "description": "contIntegration link returns 404" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" + } + }, + "commit ID": "b4d2a1426bfcbb2f5630c6182ff946b926f96e4a" + }, + "repo_40": { + "url": "https://github.com/IBM/multi-variate-parallel-transformer", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "9f5357bb55d53c66e9cfc63ef39fddb05c1c1ad7" + }, + "repo_41": { + "url": "https://github.com/mia-jinns/jinns", + "pitfalls": { + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "dbd98a4fe05f04b8f96d1bf23ea977a3938c8d66" + }, + "repo_42": { + "url": "https://github.com/PRIDE-Archive/pridepy", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "b046bd00569ae3930b51581d559cc5c5afde866a" + }, + "repo_44": { + "url": "https://github.com/SedFoam/sedfoam", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "08a5552af912fa8c89a265329484618ae7919be9" + }, + "repo_45": { + "url": "https://github.com/assume-framework/assume", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "Version does not correspond to the version used in the latest release" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + } + }, + "commit ID": "aaa904c603ef267aaab6872d67cd87affcb17688" + }, + "repo_46": { + "url": "https://github.com/felixsc1/COSplay", + "pitfalls": { + "P013": { + "source_file": "codemeta.json", + "description": "License does not have the specific version" + } + }, + "warnings": { + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W007": { + "source_file": "codemeta.json", + "description": "Identifier is empty" + } + }, + "commit ID": "9a10c3f55b1f80c916d55acb3110402cdfda6fa5" + }, + "repo_47": { + "url": "https://github.com/megasanjay/testrepository", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P011": { + "source_file": "codemeta.json", + "description": "IssueTracker violates the expected URL format" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "b589e13fb3a725d82d6d0f9a8c68de51b765e546" + }, + "repo_48": { + "url": "https://github.com/GlobalEcologyLab/poems", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + }, + "P015": { + "source_file": "codemeta.json", + "description": "contIntegration link returns 404" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" + } + }, + "commit ID": "129b021c42b726a9cb3e8b2b0786a1bc9513f4d9" + }, + "repo_49": { + "url": "https://github.com/EDIorg/ecocomDP", + "pitfalls": {}, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "531bbefc6a584cfde708c8112ac08b9c63b810bc" + }, + "repo_50": { + "url": "https://github.com/fhdsl/conrad", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "f7bda1bcc042e61b96ff84c860f3bb0ff5d690b1" + }, + "repo_51": { + "url": "https://github.com/MiguelRodo/Slides24STA5069Z", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "44fa1574b3dd34eee6eda27fb8428e44c4a9dd51" + }, + "repo_52": { + "url": "https://github.com/FairRootGroup/DDS", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + } + }, + "warnings": {}, + "commit ID": "39e33651d1fe319411d7c50ff44b5ede31d75f9d" + }, + "repo_53": { + "url": "https://github.com/amd/mumps-build", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" + }, + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "a9af8ebc5a24c075f62464daf03b30ce6ab1945b" + }, + "repo_54": { + "url": "https://github.com/MolSSI/QCEngine", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "cdda3660afee241968907c3020ee368ef8230b99" + }, + "repo_55": { + "url": "https://github.com/Simple-Robotics/proxsuite", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "00a6eff9dcb21f31b8990d232d46fba5d6b18cbf" + }, + "repo_56": { + "url": "https://github.com/ropensci/occCite", + "pitfalls": { + "P015": { + "source_file": "codemeta.json", + "description": "contIntegration link returns 404" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" + } + }, + "commit ID": "b1af9efcf9a6b892591297c08bc2f0e1c00b573a" + }, + "repo_57": { + "url": "https://github.com/sscu-budapest/lead-contamination-hungary", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "17db2298e25bb439873e3746ddab6aad05b9014f" + }, + "repo_58": { + "url": "https://github.com/Mariizero/ECGRat", + "pitfalls": { + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "eaeb1758e791926d267c69807ad5b3dab75c98a9" + }, + "repo_59": { + "url": "https://github.com/khinsen/MMTK", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "84547c238580201fe21bf3f227be7c02a1a2b9bc" + }, + "repo_60": { + "url": "https://github.com/electronicvisions/releases-ebrains", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W005": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "softwareRequirements have more than one req, but it\u2019s written as one string" + } + }, + "commit ID": "fcd2149561ab1796fba4d2500facdd3e532a6b86" + }, + "repo_61": { + "url": "https://github.com/LanguageMachines/foliautils", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" + } + }, + "commit ID": "bdcfd01531c0b147bfc2cb08f9e8e351db6100fb" + }, + "repo_62": { + "url": "https://github.com/yt-project/unyt", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + }, + "P013": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "License does not have the specific version" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W007": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Identifier is empty" + } + }, + "commit ID": "969fc6a629d332568832b849c6cb058d405ad442" + }, + "repo_63": { + "url": "https://github.com/cristal-smac/ipd", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "40c86c7f7ad51599ed402ab03bbfad398d4cce61" + }, + "repo_64": { + "url": "https://github.com/grycap/im-client", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P015": { + "source_file": "codemeta.json", + "description": "contIntegration link returns 404" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "2e9f20e0a1326a63998b2c181042f5315515b98d" + }, + "repo_65": { + "url": "https://github.com/ashbythorpe/selenider", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + }, + "P015": { + "source_file": "codemeta.json", + "description": "contIntegration link returns 404" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "0f802fea4d6429786335a9f31ca53b0e941a80de" + }, + "repo_66": { + "url": "https://github.com/HumanBrainProject/kg-core-sdks", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "83b3091785a7e007408e463122cd64cd40049bad" + }, + "repo_67": { + "url": "https://github.com/ajpelu/likelihoodTools", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P013": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "License does not have the specific version" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "e0d8fdb5b69d27a641ffc4731e8c2e5b6a21b67c" + }, + "repo_68": { + "url": "https://github.com/KonradHoeffner/rickview", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "934e834915544005e0a0106d45d222d4e745f129" + }, + "repo_69": { + "url": "https://github.com/dankelley/oce", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + }, + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P013": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "License does not have the specific version" + }, + "P015": { + "source_file": "codemeta.json", + "description": "contIntegration link returns 404" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" + } + }, + "commit ID": "40904f6d5b9b1fd3d2d0631da59759283285a93f" + }, + "repo_70": { + "url": "https://github.com/jonas-ellert/linear-time-runs", + "pitfalls": {}, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "065dfae01cccc8fa7fa8b116cfa91f272c0b22ba" + }, + "repo_71": { + "url": "https://github.com/Miagarciaru/atlas-outreach-data-tools-for-lumi36", + "pitfalls": { + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "fc28e29316a373b917db9e88c778fb52697476cc" + }, + "repo_72": { + "url": "https://github.com/peterpolidoro/kicad_bom", + "pitfalls": { + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "9868eeec378a9a3723c963c66a4a5e77023903aa" + }, + "repo_73": { + "url": "https://github.com/FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization", + "pitfalls": { + "P011": { + "source_file": "codemeta.json", + "description": "IssueTracker violates the expected URL format" + }, + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "19cc44fd5204dcc32fdff9e1a2213e5aa74db5b2" + }, + "repo_74": { + "url": "https://github.com/Nowosad/rcartocolor", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "The file does not have any specific license except for copyright" + }, + "P015": { + "source_file": "codemeta.json", + "description": "contIntegration link returns 404" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "39298c7dd95fc9d661ec88fd8fe38f1eaefe0322" + }, + "repo_75": { + "url": "https://github.com/DanielSc4/inseq", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "5a217b0410ba73d0e6b2df712d04569497a3be97" + }, + "repo_76": { + "url": "https://github.com/aravind-j/EvaluateCore", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + }, + "P003": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "There are more than two authors but only one field for them (\"author\": \"Thomas Boch and Matthieu Baumann\") instead of a list" + }, + "P009": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "coderepository points to their homepage" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W008": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "GivenName in author field, has more than one name" + } + }, + "commit ID": "83f380c102022ddfd0fb275c821b9f16e2ec4cd4" + }, + "repo_77": { + "url": "https://github.com/matthiasprobst/pivmetalib", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "a8d2fafb200cb3663f77c21bf768b94c87a2618c" + }, + "repo_78": { + "url": "https://github.com/craddm/eegUtils", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "The file does not have any specific license except for copyright" + }, + "P015": { + "source_file": "codemeta.json", + "description": "contIntegration link returns 404" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" + } + }, + "commit ID": "2b2dbe123b1fabaac414aa0f62b8259194d40e5f" + }, + "repo_79": { + "url": "https://github.com/arviz-devs/preliz", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + } + }, + "warnings": {}, + "commit ID": "2fbd0c585d81faadbc5b9818c151323a89d890b4" + }, + "repo_80": { + "url": "https://github.com/JSadowska/testLille", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "a944981f43c1bd37710b8a41442754bdc95e339b" + }, + "repo_81": { + "url": "https://github.com/riatelab/tanaka", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "fd2efc3d9b417612c81c318f0223a40f5f4e6518" + }, + "repo_82": { + "url": "https://github.com/underworldcode/underworld2", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + }, + "P006": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "License pointing to a local file instead of stating the name. For example: \u201clicense\u201d: LICENSE.MD" + }, + "P013": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "License does not have the specific version" + }, + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + } + }, + "commit ID": "a017a16c73c7c8bbb2869ceb05080c5c5098ac8e" + }, + "repo_83": { + "url": "https://github.com/caltechlibrary/admin-shell-scripts", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "ba5753c86812f4230e2c68dcecaf825c22aeefd4" + }, + "repo_84": { + "url": "https://github.com/jvegreg/ESMValCore", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P009": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "coderepository points to their homepage" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "03eb1c942bf1dc3be98cb30c3592b42e82a94f16" + }, + "repo_85": { + "url": "https://github.com/sthanhe/ParticleDispersion", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + } + }, + "commit ID": "9eafc76b75a52846b9bf78aa8a2fd0c24c5f2b9d" + }, + "repo_86": { + "url": "https://github.com/Neplex/COveR", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P013": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "License does not have the specific version" + } + }, + "warnings": { + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "35423ec7f840c68070b73a9910350c1ac93e4a53" + }, + "repo_87": { + "url": "https://github.com/AI5GW/Goertzel", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + } + }, + "commit ID": "2eb355240d0a66147309c783c91877af350414a9" + }, + "repo_88": { + "url": "https://github.com/mdstephenserdc/network_representativeness", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + } + }, + "commit ID": "a0f9fc12d1bf44811423b1fc212c0b6d398b677c" + }, + "repo_89": { + "url": "https://github.com/matthiasprobst/h5RDMtoolbox", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "eaf66f66d23fcc6b7b1728f2fe7ac6d65c9d9d85" + }, + "repo_90": { + "url": "https://github.com/m-team-kit/cookiecutter-web", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + }, + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "728cf1ae38ce76aaaa31fd52bb46006144a2e5fa" + }, + "repo_91": { + "url": "https://github.com/ParaStation/psmpi", + "pitfalls": { + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "375f8ee387a70bb5e80b774c0ec8472f2ca7d840" + }, + "repo_92": { + "url": "https://github.com/LanguageMachines/frog", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + } + }, + "commit ID": "53da3bfd9958af5e7221348607f6db358edef486" + }, + "repo_93": { + "url": "https://github.com/LDEO-CREW/Pythonic-DISORT", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "eb92fb81d422e76c1501d196bf14db6756430d03" + }, + "repo_94": { + "url": "https://github.com/barbagroup/PetIBM", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + } + }, + "warnings": { + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W007": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Identifier is empty" + } + }, + "commit ID": "be91f218702ada7fe569fe77c258fa748f075713" + }, + "repo_95": { + "url": "https://github.com/DrMattG/SDGsR", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P009": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "coderepository points to their homepage" + } + }, + "commit ID": "fa1898e88b9a31a05c2b722f36d6993595536a12" + }, + "repo_96": { + "url": "https://github.com/tesselle/kairos", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P009": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "coderepository points to their homepage" + }, + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + } + }, + "warnings": { + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" + } + }, + "commit ID": "113e0be3cc9beb2895f0ff5ac95063aad219b536" + }, + "repo_97": { + "url": "https://github.com/SeUniVr/PLC-RE", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "a12a44cbc077dbd4c20b5f4764f9d53da5647b86" + }, + "repo_98": { + "url": "https://github.com/andrew-saydjari/mfouesneau.github.com", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "17fbd909db0122eeca39d0c313b11742e7fd8164" + }, + "repo_99": { + "url": "https://github.com/fran2410/AI-Open-Science", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "592afb0b0f8a64cb57b66ed4f79d2bca9f448fbc" + }, + "repo_100": { + "url": "https://github.com/umr-amap/StormR", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + }, + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + }, + "P018": { + "source_file": "codemeta.json", + "description": "Identifier uses raw SWHIDs without their resolvable URL" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "0f179f94caac8ee075473472cb0474f54e745947" + }, + "repo_101": { + "url": "https://github.com/viznuv/transforEmotion", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + } + }, + "commit ID": "f40dbf651f4361c2cd2dca4092e6e90b9bf4a073" + }, + "repo_102": { + "url": "https://github.com/rOpenGov/r311", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "commit ID": "1273245299f477b47754319cf0e22b8cdf4995a8" + }, + "repo_103": { + "url": "https://github.com/R3BRootGroup/sofia", + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W005": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "softwareRequirements have more than one req, but it\u2019s written as one string" + } + }, + "commit ID": "ce7e8f0296333ca952d5f5554c068cc44a500380" + }, + "repo_104": { + "url": "https://github.com/sorokinvld/LLFn", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "a8ec8da19a3cc5d8207d362add83181bffa18c4e" + }, + "repo_105": { + "url": "https://github.com/DeepRank/Deeprank-GNN", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + } + }, + "warnings": {}, + "commit ID": "544ee2b98a1d784047c25f4014f09a1effcdbcec" + }, + "repo_106": { + "url": "https://github.com/r-spatialecology/landscapemetrics", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + }, + "P009": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "coderepository points to their homepage" + }, + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + } + }, + "warnings": { + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + } + }, + "commit ID": "9e777a5c5ec568ebca8f5ddec7bed1c2d465a357" + }, + "repo_107": { + "url": "https://github.com/aloftdata/getRad", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package\u2019s" + } + }, + "warnings": { + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" + } + }, + "commit ID": "f4bc21602adecdae6dfd123e8d439933de426f7b" + }, + "repo_110": { + "url": "https://github.com/R-Lum/Luminescence", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + } + }, + "warnings": { + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" + } + }, + "commit ID": "3aca65758cd130df06afb274c6a419033ecdadd0" + }, + "repo_111": { + "url": "https://github.com/naaci/watermarking", + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don\u2019t have versions" + } + }, + "commit ID": "48211f102defdb16d0cd3cf6fc281518a4a96442" + } +} \ No newline at end of file diff --git a/docs/ground_truth/charts.html b/docs/ground_truth/charts.html new file mode 100644 index 0000000..aaa408f --- /dev/null +++ b/docs/ground_truth/charts.html @@ -0,0 +1,307 @@ + + + + + + RsMetaCheck — 0.3.0 vs 0.3.3 Charts + + + + +
+ ← Home + Ground Truth Report + Version Comparison +
+ +

0.3.0 vs 0.3.3 — Charts

+ +

+ Pitfall and warning detection distributions across 150 repositories evaluated by + RsMetaCheck versions 0.3.0 and 0.3.3. +

+ +
+

0.3.0 Pitfall & Warning Distribution

+ +
+
+

Pitfalls (P001–P019)

+ +
+
+

Warnings (W001–W010)

+ +
+
+ +
+

0.3.3 Pitfall & Warning Distribution

+ +
+
+

Pitfalls (P001–P019)

+ +
+
+

Warnings (W001–W010)

+ +
+
+ +
+

0.3.0 vs 0.3.3 — Side-by-Side

+ +
+
+

Pitfalls

+ +
+
+

Warnings

+ +
+
+ + + + + diff --git a/docs/ground_truth/comparison.html b/docs/ground_truth/comparison.html index 97f20ba..202265c 100644 --- a/docs/ground_truth/comparison.html +++ b/docs/ground_truth/comparison.html @@ -3,7 +3,7 @@ - RsMetaCheck — 0.3.0 vs 0.3.1 Comparison + RsMetaCheck — 0.3.0 vs 0.3.3 Comparison
- ← Ground Truth Report + ← Home + Ground Truth Report + Charts
-

0.3.0 vs 0.3.1 — Comparison

+

0.3.0 vs 0.3.3 — Comparison

This page compares the detection results of RsMetaCheck version 0.3.0 and - version 0.3.1 on the ground truth dataset, highlighting improvements and - corrections in pitfall and warning detection across the 85 openAIRE - repositories. + version 0.3.3 across 150 repositories. What is highlighed in red is what was previously falsly flagged and fixed in the latest + release, and what is highlighted in green is what was not being detected in the ealier version of RSMetaCheck and fixed in the latest + release.

-
-

0.3.0 Pitfall & Warning Distribution

- -
-
-

Pitfalls (P001–P019)

- -
-
-

Warnings (W001–W010)

- -
-
- -
-

0.3.1 Pitfall & Warning Distribution

- -
-
-

Pitfalls (P001–P019)

- -
-
-

Warnings (W001–W010)

- -
-
- -
-

The “Before & After” Comparison

- -
-
-

Pitfalls

- -
-
-

Warnings

- -
-
-

Repository-Level Comparison

@@ -204,37 +143,24 @@

Repository-Level Comparison

Code 0.3.0 Source 0.3.0 Description - 0.3.1 Source - 0.3.1 Description + 0.3.3 Source + 0.3.3 Description - - \ No newline at end of file + diff --git a/docs/ground_truth/summary_0_3_0.json b/docs/ground_truth/summary_0_3_0.json index 4c5616d..f69d03c 100644 --- a/docs/ground_truth/summary_0_3_0.json +++ b/docs/ground_truth/summary_0_3_0.json @@ -32,29 +32,6 @@ } } }, - "CardiacModelling/protocol-design-hERG": { - "url": "https://github.com/CardiacModelling/protocol-design-hERG", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.0.1' does not match release version '1.0'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/CardiacModelling/protocol-design-hERG" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: pints, myokit" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-10-18T00:00:00' is outdated compared to repository date '2025-07-10T09:56:55'" - } - } - }, "ComputationalBiomechanicsLab/opensim-creator": { "url": "https://github.com/ComputationalBiomechanicsLab/opensim-creator", "pitfalls": { @@ -120,29 +97,6 @@ } } }, - "Duke-GCB/calrissian": { - "url": "https://github.com/Duke-GCB/calrissian", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.16.0' does not match release version '0.18.1'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: hatchling" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-10-23T00:00:00' is outdated compared to repository date '2026-02-12T01:16:54'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python" - } - } - }, "EDIorg/ecocomDP": { "url": "https://github.com/EDIorg/ecocomDP", "pitfalls": {}, @@ -157,53 +111,6 @@ } } }, - "ElektraInitiative/libelektra": { - "url": "https://github.com/ElektraInitiative/libelektra", - "pitfalls": { - "P001": { - "source_file": "package.json", - "description": "version '2.0.0' does not match release version '0.10.0'" - }, - "P006": { - "source_file": "package.json", - "description": "License points to local file instead of license name: 'SEE LICENSE IN ../../../LICENSE.md'" - }, - "P009": { - "source_file": "setup.py", - "description": "codeRepository points to homepage instead of repository: https://www.libelektra.org" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'BSD'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/ElektraInitiative/libelektra" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.8.17' does not match version '2.0.0' in package.json" - } - }, - "warnings": { - "W001": { - "source_file": "package.json", - "description": "contains software requirements without versions: wheel" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-07-23T00:00:00' is outdated compared to repository date '2026-05-11T09:01:19'" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - }, - "W010": { - "source_file": "package.json", - "description": "codeRepository uses Git shorthand instead of full URL: 'github:ElektraInitiative/libelektra'" - } - } - }, "FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization": { "url": "https://github.com/FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization", "pitfalls": { @@ -356,33 +263,6 @@ } } }, - "LanguageMachines/foliautils": { - "url": "https://github.com/LanguageMachines/foliautils", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.24' does not match release version '0.23'" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: icu, libxml2, ticcutils, libfolia" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'foliautils'" - }, - "W009": { - "source_file": "metadata files", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, "LanguageMachines/frog": { "url": "https://github.com/LanguageMachines/frog", "pitfalls": { @@ -607,16 +487,6 @@ } } }, - "Pakillo/grateful": { - "url": "https://github.com/Pakillo/grateful", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: desc, knitr, remotes, renv, rmarkdown, rstudioapi, utils" - } - } - }, "ParaStation/psmpi": { "url": "https://github.com/ParaStation/psmpi", "pitfalls": { @@ -733,86 +603,6 @@ } } }, - "Unknown": { - "url": "https://gricad-gitlab.univ-grenoble-alpes.fr/bidegarb/nautil", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: Maple" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Maple 10" - } - } - }, - "aaronmck/Badread": { - "url": "https://github.com/aaronmck/Badread", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'GPL v3.0'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/aaronmck/Badread" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: edlib, numpy, matplotlib, scipy" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2019-03-01T00:00:00' is outdated compared to repository date '2021-11-20T03:09:52'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/aaronmck/Badread/main/LICENSE" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, - "ajpelu/likelihoodTools": { - "url": "https://github.com/ajpelu/likelihoodTools", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P013": { - "source_file": "DESCRIPTION", - "description": "License does not specify version: 'GPL (>= 3)'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.1.0' does not match version '1.0.0' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: dplyr, ggplot2, rlang" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/ajpelu/likelihoodTools/e0d8fdb5b69d27a641ffc4731e8c2e5b6a21b67c/LICENSE.md" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - } - } - }, "amd/mumps-build": { "url": "https://github.com/amd/mumps-build", "pitfalls": { @@ -842,41 +632,6 @@ } } }, - "aravind-j/EvaluateCore": { - "url": "https://github.com/aravind-j/EvaluateCore", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.1.3.9000' does not match release version 'CRAN_0.1.4'" - }, - "P003": { - "source_file": "codemeta.json", - "description": "Multiple authors found in single field: '['Dhammaprakash', 'Pandhari'] Wankhede'" - }, - "P009": { - "source_file": "DESCRIPTION", - "description": "codeRepository points to homepage instead of repository: https://github.com/aravind-j/EvaluateCore\n https://CRAN.R-project.org/package=EvaluateCore\n https://aravind-j.github.io/EvaluateCore/\n https://doi.org/10.5281/zenodo.3875930" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.1.3.9000' does not match version '0.1.4.9000' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: agricolae, boot, car, cluster, dplyr, entropy, ggcorrplot, ggplot2, ggtext, grDevices, gridExtra, kSamples, mathjaxr, missMDA, psych, reshape2, Rdpack, stats, tibble, vegan" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - }, - "W008": { - "source_file": "codemeta.json", - "description": "GivenName is a list instead of string: ['Dhammaprakash', 'Pandhari'] Wankhede" - } - } - }, "assume-framework/assume": { "url": "https://github.com/assume-framework/assume", "pitfalls": { @@ -919,45 +674,6 @@ } } }, - "bernd-mueller/snoke": { - "url": "https://github.com/bernd-mueller/snoke", - "pitfalls": { - "P001": { - "source_file": "pom.xml", - "description": "version '1.0-SNAPSHOT' does not match release version '1.1'" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'https://spdx.org/licenses/CC-BY-NC-SA-4.0'" - }, - "P014": { - "source_file": "metadata files", - "description": "Identifier uses bare DOI instead of full URL: '10.5281/zenodo.4680086\t'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '1.1' does not match version '1.0-SNAPSHOT' in pom.xml" - } - }, - "warnings": { - "W001": { - "source_file": "pom.xml", - "description": "contains software requirements without versions: Java 8" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2021-02-19T00:00:00' is outdated compared to repository date '2026-02-06T13:12:05'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/bernd-mueller/snoke/master/LICENSE" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Java" - } - } - }, "bioconductor-source/treeio": { "url": "https://github.com/bioconductor-source/treeio", "pitfalls": { @@ -981,28 +697,31 @@ } } }, - "brmanuel/calliope": { - "url": "https://github.com/brmanuel/calliope", - "pitfalls": { - "P009": { - "source_file": "setup.py", - "description": "codeRepository points to homepage instead of repository: https://www.callio.pe/" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/brmanuel/calliope" - } - }, + "caltechlibrary/admin-shell-scripts": { + "url": "https://github.com/caltechlibrary/admin-shell-scripts", + "pitfalls": {}, "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "contains software requirements without versions: bash, make, pandoc, mysql, makepasswd, jq" + }, "W002": { "source_file": "metadata files", - "description": "dateModified '2018-06-04T00:00:00' is outdated compared to repository date '2022-11-23T01:55:35'" + "description": "dateModified '2022-10-19T00:00:00' is outdated compared to repository date '2025-08-06T22:10:12'" + }, + "W004": { + "source_file": "metadata files", + "description": "Programming languages without versions: Bash, Make" } } }, - "c-torre/replication-recanatesi-2015": { - "url": "https://github.com/c-torre/replication-recanatesi-2015", + "caseyyoungflesh/MCMCvis": { + "url": "https://github.com/caseyyoungflesh/MCMCvis", "pitfalls": { + "P001": { + "source_file": "DESCRIPTION", + "description": "version '0.16.5' does not match release version '0.16.3'" + }, "P002": { "source_file": "LICENSE", "description": "file contains unreplaced template placeholders" @@ -1010,84 +729,12 @@ }, "warnings": { "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: Parabola GNU/Linux-libre-5.7.10 x86_64 (local), CentOS GNU/Linux 7.8.2003 (cluster), Python 3.7.7" + "source_file": "DESCRIPTION", + "description": "contains software requirements without versions: coda, rstan, methods, overlapping, colorspace" }, "W003": { "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/c-torre/replication-recanatesi-2015/full-replication/LICENSE" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python 3" - }, - "W005": { - "source_file": "codemeta.json", - "description": "Multiple requirements written as single string: 'Parabola GNU/Linux-libre-5.7.10 x86_64 (local)'" - } - } - }, - "caltechlibrary/admin-shell-scripts": { - "url": "https://github.com/caltechlibrary/admin-shell-scripts", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: bash, make, pandoc, mysql, makepasswd, jq" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2022-10-19T00:00:00' is outdated compared to repository date '2025-08-06T22:10:12'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Bash, Make" - } - } - }, - "capstone-insper/drone-swarm-search": { - "url": "https://github.com/capstone-insper/drone-swarm-search", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.0.3' does not match release version '0.2.6'" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: wheel, h5py, xarray, python-dotenv" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-04-25T00:00:00' is outdated compared to repository date '2026-05-15T17:16:03'" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, - "caseyyoungflesh/MCMCvis": { - "url": "https://github.com/caseyyoungflesh/MCMCvis", - "pitfalls": { - "P001": { - "source_file": "DESCRIPTION", - "description": "version '0.16.5' does not match release version '0.16.3'" - }, - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: coda, rstan, methods, overlapping, colorspace" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/caseyyoungflesh/MCMCvis/3c7b05282dbe3b509f2a101e0ac5fd397c283cfa/LICENSE.md" + "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/caseyyoungflesh/MCMCvis/3c7b05282dbe3b509f2a101e0ac5fd397c283cfa/LICENSE.md" }, "W004": { "source_file": "metadata files", @@ -1144,52 +791,6 @@ } } }, - "dbbs-lab/bsb": { - "url": "https://github.com/dbbs-lab/bsb", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: Python (version 3.10+), setuptools" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2026-04-16T00:00:00' is outdated compared to repository date '2026-05-05T18:14:57'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/dbbs-lab/bsb/main/LICENSE" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python" - } - } - }, - "dynamicslab/pysindy": { - "url": "https://github.com/dynamicslab/pysindy", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.2.3' does not match release version '2.1.0'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: scipy, typing_extensions, setuptools, setuptools-scm" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2021-10-21T00:00:00' is outdated compared to repository date '2026-05-21T17:35:55'" - } - } - }, "electronicvisions/releases-ebrains": { "url": "https://github.com/electronicvisions/releases-ebrains", "pitfalls": { @@ -1332,25 +933,6 @@ } } }, - "geospace-code/pymap3d": { - "url": "https://github.com/geospace-code/pymap3d", - "pitfalls": { - "P014": { - "source_file": "metadata files", - "description": "Identifier uses bare DOI instead of full URL: '10.21105/joss.00580'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python" - } - } - }, "grycap/im-client": { "url": "https://github.com/grycap/im-client", "pitfalls": { @@ -1382,39 +964,6 @@ } } }, - "iljah/hdintegrator": { - "url": "https://github.com/iljah/hdintegrator", - "pitfalls": {}, - "warnings": { - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/iljah/hdintegrator/f2ab7fb246ef88a79789e492d1f40d3a07b602d9/LICENSE" - } - } - }, - "instatdealii/idealii": { - "url": "https://github.com/instatdealii/idealii", - "pitfalls": { - "P008": { - "source_file": "codemeta.json", - "description": "Software requirements contain invalid URLs: www.github.com/dealii/dealii" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: www.github.com/dealii/dealii," - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-08-15T00:00:00' is outdated compared to repository date '2025-10-13T13:52:44'" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++, CMake, Hack" - } - } - }, "jonas-ellert/linear-time-runs": { "url": "https://github.com/jonas-ellert/linear-time-runs", "pitfalls": {}, @@ -1444,33 +993,6 @@ } } }, - "khinsen/MMTK": { - "url": "https://github.com/khinsen/MMTK", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '2.7.13' does not match release version 'rel2.7.13'" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: https://numpy.org/, https://github.com/khinsen/ScientificPython/" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-02-17T00:00:00' is outdated compared to repository date '2025-12-09T04:15:15'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/khinsen/MMTK/84547c238580201fe21bf3f227be7c02a1a2b9bc/README" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python 2" - } - } - }, "lecfab/rescience-gorder": { "url": "https://github.com/lecfab/rescience-gorder", "pitfalls": {}, @@ -1545,21 +1067,6 @@ } } }, - "mdstephenserdc/network_representativeness": { - "url": "https://github.com/mdstephenserdc/network_representativeness", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/mdstephenserdc/network_representativeness/a0f9fc12d1bf44811423b1fc212c0b6d398b677c/LICENSE" - } - } - }, "megasanjay/testrepository": { "url": "https://github.com/megasanjay/testrepository", "pitfalls": { @@ -1610,83 +1117,6 @@ } } }, - "mikldk/mitolina": { - "url": "https://github.com/mikldk/mitolina", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'GPL v2.0'" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: methods" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2019-02-18T00:00:00' is outdated compared to repository date '2022-01-19T12:39:43'" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, - "ms609/Quartet": { - "url": "https://github.com/ms609/Quartet", - "pitfalls": { - "P013": { - "source_file": "DESCRIPTION", - "description": "License does not specify version: 'GPL (>= 2)'" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: ape, lifecycle, PlotTools, viridisLite" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'Quartet'" - } - } - }, - "ms609/TreeDist": { - "url": "https://github.com/ms609/TreeDist", - "pitfalls": { - "P001": { - "source_file": "DESCRIPTION", - "description": "version '2.14.0.9000' does not match release version '2.14.0'" - }, - "P013": { - "source_file": "DESCRIPTION", - "description": "License does not specify version: 'GPL (>= 3)'" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: stats, colorspace, shiny, shinyjs" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'TreeDist'" - } - } - }, "ms609/TreeSearch": { "url": "https://github.com/ms609/TreeSearch", "pitfalls": { @@ -1722,25 +1152,6 @@ } } }, - "munich-quantum-toolkit/core": { - "url": "https://github.com/munich-quantum-toolkit/core", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '3.0.0' does not match release version '3.6.1'" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-11-07T00:00:00' is outdated compared to repository date '2026-05-21T12:30:23'" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, "naaci/watermarking": { "url": "https://github.com/naaci/watermarking", "pitfalls": { @@ -1838,66 +1249,8 @@ } } }, - "phreppo/bait": { - "url": "https://github.com/phreppo/bait", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/phreppo/bait" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2021-04-26T00:00:00' is outdated compared to repository date '2022-05-17T04:25:30'" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/phreppo/bait/master/LICENSE" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Java" - } - } - }, - "proycon/colibri-core": { - "url": "https://github.com/proycon/colibri-core", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel, Cython" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/proycon/colibri-core/master/LICENSE" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++, Cython" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'colibricore'" - }, - "W009": { - "source_file": "metadata files", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, - "r-spatialecology/landscapemetrics": { - "url": "https://github.com/r-spatialecology/landscapemetrics", + "r-spatialecology/landscapemetrics": { + "url": "https://github.com/r-spatialecology/landscapemetrics", "pitfalls": { "P001": { "source_file": "DESCRIPTION", @@ -1931,43 +1284,6 @@ } } }, - "rOpenGov/r311": { - "url": "https://github.com/rOpenGov/r311", - "pitfalls": { - "P017": { - "source_file": "codemeta.json", - "description": "version '0.4.3' does not match version '0.4.4' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: curl, jsonlite, tools, utils" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - } - } - }, - "rcsb/py-rcsbsearchapi": { - "url": "https://github.com/rcsb/py-rcsbsearchapi", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: tqdm" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/rcsb/py-rcsbsearchapi/master/README.md" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: Python 3" - } - } - }, "riatelab/tanaka": { "url": "https://github.com/riatelab/tanaka", "pitfalls": { @@ -1987,99 +1303,6 @@ } } }, - "rism-digital/verovio": { - "url": "https://github.com/rism-digital/verovio", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '6.3.0-dev' does not match release version 'ersion-6.2.0'" - }, - "P003": { - "source_file": "package.json", - "description": "Multiple authors found in single field: 'Laurent Pugin and others'" - }, - "P009": { - "source_file": "setup.py", - "description": "codeRepository points to homepage instead of repository: https://www.verovio.org" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '6.3.0-dev' does not match version '0.1.0' in pyproject.toml" - } - }, - "warnings": { - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: C++, Python, JavaScript, Java" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'Verovio'" - } - } - }, - "ropensci/CoordinateCleaner": { - "url": "https://github.com/ropensci/CoordinateCleaner", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '2.0.20' does not match release version '2.0-4'" - }, - "P008": { - "source_file": "codemeta.json", - "description": "Software requirements contain invalid URLs: https://sysreqs.r-hub.io/get/gdal" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '2.0.20' does not match version '3.0.1' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: dplyr, dplyr, geosphere, geosphere, ggplot2, ggplot2, graphics, graphics, grDevices, grDevices, methods, methods, raster, rgbif, rgbif, rgeos, rgdal, rnaturalearth, stats, stats, sp, tidyselect, tidyselect, utils, utils, https://sysreqs.r-hub.io/get/gdal, https://sysreqs.r-hub.io/get/libgdal, terra" - }, - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'CoordinateCleaner'" - }, - "W009": { - "source_file": "metadata files", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, - "ropensci/USAboundariesData": { - "url": "https://github.com/ropensci/USAboundariesData", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.5.0' does not match release version '0.5.1'" - }, - "P003": { - "source_file": "DESCRIPTION", - "description": "Multiple authors found in single field: 'Dr. William M. Scholl Center for American History and Culture,\n The Newberry Library'" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'https://spdx.org/licenses/CC-BY-NC-SA-4.0'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.5.0' does not match version '0.5.1' in DESCRIPTION" - } - }, - "warnings": { - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - } - } - }, "ropensci/geojson": { "url": "https://github.com/ropensci/geojson", "pitfalls": { @@ -2184,16 +1407,6 @@ } } }, - "sje30/rescience-hor": { - "url": "https://github.com/sje30/rescience-hor", - "pitfalls": {}, - "warnings": { - "W004": { - "source_file": "metadata files", - "description": "Programming languages without versions: R" - } - } - }, "sorokinvld/LLFn": { "url": "https://github.com/sorokinvld/LLFn", "pitfalls": {}, @@ -2204,33 +1417,6 @@ } } }, - "sourmash-bio/sourmash": { - "url": "https://github.com/sourmash-bio/sourmash", - "pitfalls": { - "P001": { - "source_file": "pyproject.toml", - "description": "version '4.9.5-dev' does not match release version '4.9.4'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version 'v1.0.0' does not match version '4.9.5-dev' in pyproject.toml" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: -e .[all], numpy, matplotlib, scipy, cffi" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-06-07T00:00:00' is outdated compared to repository date '2026-05-18T20:38:45'" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, "sscu-budapest/lead-contamination-hungary": { "url": "https://github.com/sscu-budapest/lead-contamination-hungary", "pitfalls": {}, @@ -2412,29 +1598,6 @@ } } }, - "vc1492a/PyNomaly": { - "url": "https://github.com/vc1492a/PyNomaly", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.2.0' does not match release version '0.3.5'" - }, - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository points to different repository: https://github.com/vc1492a/PyNomaly" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2018-05-07T00:00:00' is outdated compared to repository date '2026-05-16T16:32:24'" - }, - "W007": { - "source_file": "metadata files", - "description": "identifier field is empty or missing" - } - } - }, "viznuv/transforEmotion": { "url": "https://github.com/viznuv/transforEmotion", "pitfalls": { @@ -2488,5 +1651,1428 @@ "description": "identifier field is empty or missing" } } + }, + "Duke-GCB/calrissian": { + "url": "https://github.com/Duke-GCB/calrissian", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.16.0' does not match release version '0.18.1'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: hatchling" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2023-10-23T00:00:00' is outdated compared to repository date '2026-06-24T14:23:37'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python" + } + } + }, + "aravind-j/EvaluateCore": { + "url": "https://github.com/aravind-j/EvaluateCore", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.1.5', codemeta.json version '0.1.5' and DESCRIPTION version '0.1.5.900' does not match release version 'CRAN_0.1.5'" + }, + "P009": { + "source_file": "DESCRIPTION", + "description": "P009 detected: DESCRIPTION codeRepository points to homepage instead of repository: https://github.com/aravind-j/EvaluateCore\n https://CRAN.R-project.org/package=EvaluateCore\n https://aravind-j.github.io/EvaluateCore/\n https://doi.org/10.5281/zenodo.3875930" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.1.5' does not match DESCRIPTION version '0.1.5.900'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: agricolae, boot, car, cluster, dplyr, entropy, ggcorrplot, ggplot2, ggtext, grDevices, gridExtra, kSamples, mathjaxr, missMDA, psych, reshape2, Rdpack, stats, tibble, vegan" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "ms609/Quartet": { + "url": "https://github.com/ms609/Quartet", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: ape, PlotTools" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'Quartet'" + } + } + }, + "rOpenGov/r311": { + "url": "https://github.com/rOpenGov/r311", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.4.3' does not match release version '0.4.4'" + }, + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.4.3' does not match DESCRIPTION version '0.4.4'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: curl, jsonlite, tools, utils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "A-Klingenberg/VIPER": { + "url": "https://github.com/A-Klingenberg/VIPER", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.1089/cmb.2024.0866'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-03-27T00:00:00' is outdated compared to repository date '2025-05-15T15:50:26'" + } + } + }, + "AI4LAM/awesome-ai4lam": { + "url": "https://github.com/AI4LAM/awesome-ai4lam", + "pitfalls": { + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/AI4LAM/awesome-ai4lam, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/mhucka/awesome-ai4lam" + } + }, + "warnings": { + "W003": { + "source_file": "README.md", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/AI4LAM/awesome-ai4lam/main/README.md" + } + } + }, + "AgrDataSci/gosset": { + "url": "https://github.com/AgrDataSci/gosset", + "pitfalls": { + "P009": { + "source_file": "codemeta.json", + "description": "P009 detected: codemeta.json codeRepository points to homepage instead of repository: https://agrdatasci.github.io/gosset/" + }, + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/AgrDataSci/gosset, and the ones found in codemeta.json are mismatched: codemeta.json: https://agrdatasci.github.io/gosset/" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: methods, BradleyTerry2, DescTools, ggplot2, ggparty, ggrepel, lifecycle, partykit, PlackettLuce, psychotools, qvcalc, stats, tidyr, utils, patchwork, parallel" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'gosset'" + } + } + }, + "CSCfi/PID-MS-API": { + "url": "https://github.com/CSCfi/PID-MS-API", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and pom.xml version '1.1.' does not match pom.xml version '1.1.7'" + } + }, + "warnings": { + "W001": { + "source_file": "pom.xml", + "description": "W001 detected: pom.xml contains software requirements without versions: quarkus-hibernate-orm-rest-data-panache, quarkus-jdbc-mariadb, quarkus-config-yaml, quarkus-resteasy-jackson, quarkus-agroal, quarkus-smallrye-health, quarkus-micrometer-registry-prometheus, quarkus-arc, quarkus-junit5, rest-assured, quarkus-smallrye-openapi" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2023-05-24T00:00:00' is outdated compared to repository date '2025-04-22T10:09:05'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Java" + } + } + }, + "FC4E-CAT/fc4e-cat-ui": { + "url": "https://github.com/FC4E-CAT/fc4e-cat-ui", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.3.1' does not match release version '3.2.0'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and package.json version '1.3.1' does not match package.json version '3.2.0'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-09-11T00:00:00' is outdated compared to repository date '2025-09-23T11:10:28'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Typescript" + } + } + }, + "INM-6/beaverdam": { + "url": "https://github.com/INM-6/beaverdam", + "pitfalls": {}, + "warnings": {} + }, + "IPBES-Data/IPBES.R": { + "url": "https://github.com/IPBES-Data/IPBES.R", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: DESCRIPTION version '0.4.2' and codemeta.json version '0.2.8' does not match release version '0.4.0'" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/IPBES-Data/IPBES.R, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/rkrug/IPBES.R" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.2.8' does not match DESCRIPTION version '0.4.2'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: openalexR, dplyr, writexl, tidygraph, ggplot2, ggraph, networkD3, httr2, tibble, tidyterra, terra, countrycode, geodata, DT" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "JeffreyRStevens/cocoon": { + "url": "https://github.com/JeffreyRStevens/cocoon", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: cli, dplyr, lifecycle" + }, + "W003": { + "source_file": "metadata files", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/JeffreyRStevens/cocoon/main/LICENSE.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "JeremyGelb/geocmeans": { + "url": "https://github.com/JeremyGelb/geocmeans", + "pitfalls": { + "P001": { + "source_file": "DESCRIPTION", + "description": "P001 detected: DESCRIPTION version '0.3.4.1.9000' does not match release version '0.3.4'" + } + }, + "warnings": {} + }, + "LEEF-UZH/LEEF.archive.default": { + "url": "https://github.com/LEEF-UZH/LEEF.archive.default", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.0.0' and DESCRIPTION version '1.0.0' does not match release version '1.1.0'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: openssl, yaml" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "LEEF-UZH/LEEF.measurement.flowcam": { + "url": "https://github.com/LEEF-UZH/LEEF.measurement.flowcam", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.0.0' and DESCRIPTION version '1.0.0' does not match release version '1.1.0'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: data.table, yaml, utils, plyr, dplyr, purrr, magrittr, e1071, tidyselect, stats, loggit, randomForest" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "LanguageMachines/dimbl": { + "url": "https://github.com/LanguageMachines/dimbl", + "pitfalls": {}, + "warnings": {} + }, + "LanguageMachines/mbt": { + "url": "https://github.com/LanguageMachines/mbt", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: libxml2, ticcutils, timbl" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: C++" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'mbt'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "LanguageMachines/timbl": { + "url": "https://github.com/LanguageMachines/timbl", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: libxml2, ticcutils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: C++" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'timbl'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "MITDDC/plnr-1971-1982": { + "url": "https://github.com/MITDDC/plnr-1971-1982", + "pitfalls": {}, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Micro-Planner" + } + } + }, + "OneFineStarstuff/OneFineStarstuff.github.io": { + "url": "https://github.com/OneFineStarstuff/OneFineStarstuff.github.io", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json, Dockerfile and package.json version '1.2.0' does not match metadata files version '1.0.0', package.json version '1.0.0', metadata files version '1.0.0'" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: fastapi, uvicorn, torch, transformers, Pillow, whisper, ultralytics, pyttsx3, loguru, nest_asyncio, setuptools, wheel" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-12-18T00:00:00' is outdated compared to repository date '2026-06-23T06:29:43'" + } + } + }, + "R-Lum/xlum": { + "url": "https://github.com/R-Lum/xlum", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: utils, methods" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'xlum'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#Concept" + } + } + }, + "R3BRootGroup/frs": { + "url": "https://github.com/R3BRootGroup/frs", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version 'dec25' does not match release version 'jun26'" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: FairRoot, FairSoft, R3BRoot" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2025-12-22T00:00:00' is outdated compared to repository date '2026-06-03T15:22:25'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: C, C++" + }, + "W005": { + "source_file": "codemeta.json", + "description": "W005 detected: codemeta.json Multiple requirements written as single string: 'FairRoot, FairSoft, R3BRoot'" + } + } + }, + "adamhsparks/ChickpeaAscoDispersal": { + "url": "https://github.com/adamhsparks/ChickpeaAscoDispersal", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: graphics, mgcViz" + }, + "W003": { + "source_file": "README.md", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/adamhsparks/ChickpeaAscoDispersal/master/README.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'ChickpeaAscoDispersal'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.tidyverse.org/lifecycle/#stable" + } + } + }, + "adeverse/adephylo": { + "url": "https://github.com/adeverse/adephylo", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.1.17' does not match release version '1.1-17'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '1.1.17' does not match DESCRIPTION version '1.1-17'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: methods, phylobase, ape, adegenet" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "adrijmz/os_group_project": { + "url": "https://github.com/adrijmz/os_group_project", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.11200165'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-04-20T00:00:00' is outdated compared to repository date '2024-05-21T19:16:01'" + } + } + }, + "amasson84/costcalc": { + "url": "https://github.com/amasson84/costcalc", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: CODEMETA.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.1469035'" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/amasson84/costcalc, and the ones found in codemeta.json are mismatched: CODEMETA.json: https://github.com/epfllibrary/costcalc" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and package.json version '2.4' does not match package.json version '1.0.0'" + } + }, + "warnings": {} + }, + "aravind-j/rpcss": { + "url": "https://github.com/aravind-j/rpcss", + "pitfalls": { + "P009": { + "source_file": "DESCRIPTION", + "description": "P009 detected: DESCRIPTION codeRepository points to homepage instead of repository: https://github.com/aravind-j/rpcss\n https://cran.r-project.org/package=rpcss\n https://aravind-j.github.io/rpcss/\n https://doi.org/10.5281/zenodo.14889174" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json, DESCRIPTION and CITATION.cff version '0.1.1' does not match DESCRIPTION version '0.1.1.9000', metadata files version '0.1.1.9000'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: dplyr, FactoMineR, ggplot2, ggrepel, gslnls, mathjaxr, methods, Rdpack, stats, tidyr, utils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "atsyplenkov/rp5pik": { + "url": "https://github.com/atsyplenkov/rp5pik", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.0.2' does not match release version '0.0.2.2'" + }, + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.0.2' does not match DESCRIPTION version '0.0.2.2'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: cli, dplyr, lifecycle, lubridate, purrr, rvest, stringr, terra, tibble, tidyr" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://lifecycle.r-lib.org/articles/stages.html#experimental" + } + } + }, + "bihealth/vcfpy": { + "url": "https://github.com/bihealth/vcfpy", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.7.0' and pyproject.toml version '0.14.2' does not match release version '0.14.1'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and pyproject.toml version 'v0.7.0' does not match pyproject.toml version '0.14.2'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: hatchling" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2016-09-28T00:00:00' is outdated compared to repository date '2026-04-25T08:19:41'" + } + } + }, + "biogo/biogo": { + "url": "https://github.com/biogo/biogo", + "pitfalls": { + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'BSD-3 like'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2017-01-05T00:00:00' is outdated compared to repository date '2026-06-12T09:49:10'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "boydorr/TraitExtraction.jl": { + "url": "https://github.com/boydorr/TraitExtraction.jl", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and Project.toml version 'v0.1.0' does not match Project.toml version '0.1.0'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: julia" + } + } + }, + "caltechlibrary/irdm_harvester": { + "url": "https://github.com/caltechlibrary/irdm_harvester", + "pitfalls": { + "P008": { + "source_file": "requirements.txt", + "description": "P008 detected: requirements.txt Software requirements contain invalid URLs: https://github.com/caltechlibrary/dimcli@cris-auth" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: dimcli @ git+https://github.com/caltechlibrary/dimcli@cris-auth" + } + } + }, + "cetoolbox/cetoolbox": { + "url": "https://github.com/cetoolbox/cetoolbox", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.6.0' does not match release version '1.6.1'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Java" + } + } + }, + "daliwang/kmELM": { + "url": "https://github.com/daliwang/kmELM", + "pitfalls": {}, + "warnings": {} + }, + "destination-earth/DestinE_ESA_GFTS": { + "url": "https://github.com/destination-earth/DestinE_ESA_GFTS", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: https://github.com/destination-earth/DestinE_ESA_GFTS/blob/main/.binder/environment.yml, chartpress, click, conda-lock" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: Programming languages in metadata do not have version specifications" + } + } + }, + "donomii/quon-jupyter": { + "url": "https://github.com/donomii/quon-jupyter", + "pitfalls": { + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'GPL v3.0'" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/donomii/quon-jupyter, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/gopherdata/gophernotes" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2017-12-13T00:00:00' is outdated compared to repository date '2020-12-22T00:42:25'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "dutta-alankar/AstroPlasma": { + "url": "https://github.com/dutta-alankar/AstroPlasma", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: hatchling" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: C++" + } + } + }, + "elipousson/bingmapr": { + "url": "https://github.com/elipousson/bingmapr", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: httr2, magick, sf, utils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "elipousson/sharepointr": { + "url": "https://github.com/elipousson/sharepointr", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.1.0' does not match DESCRIPTION version '0.1.0.9000'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: AzureGraph, cli, glue, httr, httr2, lifecycle, Microsoft365R, rlang, stringr, utils, vctrs" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://lifecycle.r-lib.org/articles/stages.html#experimental" + } + } + }, + "epfllibrary/costcalc": { + "url": "https://github.com/epfllibrary/costcalc", + "pitfalls": { + "P001": { + "source_file": "package.json", + "description": "P001 detected: package.json version '1.0.0' does not match release version '2.4'" + }, + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: CODEMETA.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.1469035'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and package.json version '2.4' does not match package.json version '1.0.0'" + } + }, + "warnings": {} + }, + "explore-platform/s-disco": { + "url": "https://github.com/explore-platform/s-disco", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: Visualiser" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2023-07-01T00:00:00' is outdated compared to repository date '2024-05-21T13:59:28'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python, Java" + } + } + }, + "fairdataihub/SODA-for-SPARC": { + "url": "https://github.com/fairdataihub/SODA-for-SPARC", + "pitfalls": {}, + "warnings": {} + }, + "fchuffar/gse2study": { + "url": "https://github.com/fchuffar/gse2study", + "pitfalls": { + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/fchuffar/gse2study, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/fchuffar/ptlmapper" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "fospald/heamd": { + "url": "https://github.com/fospald/heamd", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'GPL'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2018-10-02T00:00:00' is outdated compared to repository date '2025-04-21T09:24:58'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "gabrielblain/SPIChanges": { + "url": "https://github.com/gabrielblain/SPIChanges", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: gamlss, gamlss.dist, lubridate, MuMIn, rlang, spsUtil, stats, brglm2, zoo" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "heuermh/sea-eagle": { + "url": "https://github.com/heuermh/sea-eagle", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.10', codemeta.json version '0.10' and pom.xml version '1.0-SNAPSHOT' does not match release version 'sea-eagle-0.10'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and pom.xml version '0.10' does not match pom.xml version '1.0-SNAPSHOT'" + } + }, + "warnings": { + "W001": { + "source_file": "pom.xml", + "description": "W001 detected: pom.xml contains software requirements without versions: tamboui-toolkit, tamboui-jline3-backend, picocli, dsh-compress, duckdb_jdbc, slf4j-api, slf4j-simple, athena, guava" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2026-06-26T00:00:00' is outdated compared to repository date '2026-06-30T01:43:38'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Java" + } + } + }, + "hykelvinlee42/RRLeo-Photometry": { + "url": "https://github.com/hykelvinlee42/RRLeo-Photometry", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.8190781'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python" + } + } + }, + "interTwin-eu/dcnios": { + "url": "https://github.com/interTwin-eu/dcnios", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.0.0' and package.json version '0.0.0' does not match release version '0.0.1'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and package.json version '1.0.0' does not match package.json version '0.0.0'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-02-01T00:00:00' is outdated compared to repository date '2025-12-11T14:27:54'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "janelia-kicad/trinamic-wiring": { + "url": "https://github.com/janelia-kicad/trinamic-wiring", + "pitfalls": {}, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-07-31T00:00:00' is outdated compared to repository date '2025-05-14T07:09:57'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: KiCad" + } + } + }, + "jimbrig/RPkg": { + "url": "https://github.com/jimbrig/RPkg", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: DBI, fs, glue, jsonlite, lubridate, plumber, pool, safer, sessioninfo, stringr, tibble, urltools, utils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "justinbois/bebi103": { + "url": "https://github.com/justinbois/bebi103", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.1.28' does not match release version '0.1.26'" + }, + "P013": { + "source_file": "setup.py", + "description": "P013 detected: setup.py License does not specify version: 'BSD'" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: contourpy, numpy, numba, xarray, scipy, pandas, polars, tqdm, matplotlib, colorcet, holoviews" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python" + } + } + }, + "karthik/wesanderson": { + "url": "https://github.com/karthik/wesanderson", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "leonawicz/rtrek": { + "url": "https://github.com/leonawicz/rtrek", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: downloader, dplyr, ggplot2, jpeg, jsonlite, memoise, png, purrr, rvest, tibble, tidyr, xml2" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "lifewatch/eva": { + "url": "https://github.com/lifewatch/eva", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.0.1' does not match release version '0.1.0'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python, R" + } + } + }, + "lionandjelka/QhX1": { + "url": "https://github.com/lionandjelka/QhX1", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: numpy, pandas, scipy, scikit-learn, scikit-optimize, libwwz, colorednoise, tqdm, panel, hvplot, bokeh, datashader, pyarrow, dask[dataframe], traitlets, wheel" + } + } + }, + "meng630/GMD_E3SM_SCM": { + "url": "https://github.com/meng630/GMD_E3SM_SCM", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: sphinx, sphinx_rtd_theme, nbsphinx, sphinx-reload" + } + } + }, + "meng630/e3sm_maint-2.0": { + "url": "https://github.com/meng630/e3sm_maint-2.0", + "pitfalls": {}, + "warnings": {} + }, + "mikemahoney218/mvdf": { + "url": "https://github.com/mikemahoney218/mvdf", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: methods, rlang, glue, proceduralnames" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "mlr-org/mcboost": { + "url": "https://github.com/mlr-org/mcboost", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: DESCRIPTION version '0.4.4.9000' and codemeta.json version '0.4.0' does not match release version '0.4.3'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.4.0' does not match DESCRIPTION version '0.4.4.9000'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: backports, rmarkdown, rpart, glmnet" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'mcboost'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://lifecycle.r-lib.org/articles/stages.html#experimental" + } + } + }, + "mscroggs/pyfax": { + "url": "https://github.com/mscroggs/pyfax", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: requests, feedparser, sphinx-autoapi" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-02-06T00:00:00' is outdated compared to repository date '2025-02-13T11:09:23'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "nkrofta/Topological-Groups": { + "url": "https://github.com/nkrofta/Topological-Groups", + "pitfalls": {}, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Isabelle" + } + } + }, + "riatelab/cartography": { + "url": "https://github.com/riatelab/cartography", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: classInt, curl, graphics, methods, png, raster, Rcpp, sf, sp, stats, utils, grDevices" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'cartography'" + } + } + }, + "riatelab/flows": { + "url": "https://github.com/riatelab/flows", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: igraph, graphics, mapsf, utils, stats" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "ropensci/ReLTER": { + "url": "https://github.com/ropensci/ReLTER", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: dplyr, dtplyr, ggforce, ggspatial, geojsonsf, ggplot2, httr2, jqr, jsonlite, lifecycle, lubridate, magrittr, purrr, qrcode, utils, units, tibble, stringr, terra" + }, + "W003": { + "source_file": "metadata files", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/ropensci/ReLTER/main/LICENSE.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "ropensci/sofa": { + "url": "https://github.com/ropensci/sofa", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.4.0' does not match release version '0.4.1'" + }, + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.4.0' does not match DESCRIPTION version '0.4.1'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: mime" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: http://www.repostatus.org/#active" + } + } + }, + "rreinecke/global-gradient-based-groundwater-model": { + "url": "https://github.com/rreinecke/global-gradient-based-groundwater-model", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.0.0' does not match release version '1.1'" + }, + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P009": { + "source_file": "codemeta.json", + "description": "P009 detected: codemeta.json codeRepository points to homepage instead of repository: http://globalgroundwatermodel.org/" + }, + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'GPL v3.0'" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/rreinecke/global-gradient-based-groundwater-model, and the ones found in codemeta.json are mismatched: codemeta.json: http://globalgroundwatermodel.org/" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2018-01-02T00:00:00' is outdated compared to repository date '2026-03-11T10:32:43'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "rsdoiel/gameset": { + "url": "https://github.com/rsdoiel/gameset", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Go" + } + } + }, + "slugb0t/FlaskBlog": { + "url": "https://github.com/slugb0t/FlaskBlog", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.1.2' and codemeta.json version '0.1.2' does not match release version '111.973987.123'" + }, + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.13942931'" + } + }, + "warnings": {} + }, + "usa-npn/rnpn": { + "url": "https://github.com/usa-npn/rnpn", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.4.0', codemeta.json version '1.4.0' and DESCRIPTION version '1.4.1.9000' does not match release version '1.4.1'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '1.4.0' does not match DESCRIPTION version '1.4.1.9000'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: dplyr, jsonlite, lifecycle, magrittr, readr, rlang, tibble, tidyr, xml2" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "vrineau/Agatta": { + "url": "https://github.com/vrineau/Agatta", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.8.1' does not match release version '1.0.2'" + }, + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: https://github.com/vrineau/Agatta/blob/main/requirements.txt" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-03-08T00:00:00' is outdated compared to repository date '2026-02-27T10:33:21'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: Programming languages in metadata do not have version specifications" + } + } + }, + "willgryan/PAVER": { + "url": "https://github.com/willgryan/PAVER", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: DESCRIPTION version '0.0.0.9000' and codemeta.json version '0.0.0.9000' does not match release version 'pre-release'" + }, + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/willgryan/PAVER, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/AliSajid/PAVER" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: circlize, ComplexHeatmap, dplyr, dynamicTreeCut, forcats, ggplot2, ggplotify, ggprism, ggpubr, ggrepel, grid, magrittr, purrr, randomcoloR, rlang, smacof, stringr, tibble, tidyr, umap" + }, + "W003": { + "source_file": "metadata files", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/willgryan/PAVER/main/LICENSE.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "ybarborini/jdev-t5A02": { + "url": "https://github.com/ybarborini/jdev-t5A02", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and bower.json version '1.0.0' does not match bower.json version '0.0.1'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-10-10T00:00:00' is outdated compared to repository date '2024-11-22T13:47:13'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: PHP, JS" + } + } + }, + "ypwong22/ELM_SPRUCE": { + "url": "https://github.com/ypwong22/ELM_SPRUCE", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: numpy, xarray, zarr, netCDF4, cftime" + } + } + }, + "zbmed-semtec/doc2vec-doc-relevance": { + "url": "https://github.com/zbmed-semtec/doc2vec-doc-relevance", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P018": { + "source_file": "codemeta.json", + "description": "P018 detected: codemeta.json Identifier uses raw SWHID without resolvable URL: 'swh:1:dir:5939540bdda33571b0969e520360b80d98b2bf2b'" + } + }, + "warnings": {} } } \ No newline at end of file diff --git a/docs/ground_truth/summary_0_3_1.json b/docs/ground_truth/summary_0_3_1.json index 1914775..243b324 100644 --- a/docs/ground_truth/summary_0_3_1.json +++ b/docs/ground_truth/summary_0_3_1.json @@ -28,25 +28,6 @@ } } }, - "CardiacModelling/protocol-design-hERG": { - "url": "https://github.com/CardiacModelling/protocol-design-hERG", - "pitfalls": { - "P016": { - "source_file": "", - "description": "the correct URL is https://github.com/CardiacModelling/protocol-design-hERG, and the one found in codemeta.json is https://github.com/SALib/SALib" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: pints, myokit" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-10-18T00:00:00' is outdated compared to repository date '2025-07-10T09:56:55'" - } - } - }, "ComputationalBiomechanicsLab/opensim-creator": { "url": "https://github.com/ComputationalBiomechanicsLab/opensim-creator", "pitfalls": { @@ -99,29 +80,6 @@ } } }, - "Duke-GCB/calrissian": { - "url": "https://github.com/Duke-GCB/calrissian", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.16.0' does not match release version '0.18.1'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: hatchling" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-10-23T00:00:00' is outdated compared to repository date '2026-02-12T01:16:54'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Python" - } - } - }, "EDIorg/ecocomDP": { "url": "https://github.com/EDIorg/ecocomDP", "pitfalls": { @@ -137,53 +95,6 @@ } } }, - "ElektraInitiative/libelektra": { - "url": "https://github.com/ElektraInitiative/libelektra", - "pitfalls": { - "P001": { - "source_file": "codemeta.json; package.json; pom.xml", - "description": "version '0.8.17' does not match release version '0.10.0'; version '2.0.0' does not match release version '0.10.0'; version '0.0.1-SNAPSHOT' does not match release version '0.10.0'" - }, - "P006": { - "source_file": "package.json", - "description": "License points to local file instead of license name: 'SEE LICENSE IN ../../../LICENSE.md'" - }, - "P009": { - "source_file": "setup.py", - "description": "codeRepository points to homepage instead of repository: https://www.libelektra.org" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'BSD'" - }, - "P016": { - "source_file": "", - "description": "the correct URL is https://github.com/ElektraInitiative/libelektra, and the one found in codemeta.json is https://www.libelektra.org" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.8.17' does not match version '2.0.0' in package.json" - } - }, - "warnings": { - "W001": { - "source_file": "package.json", - "description": "contains software requirements without versions: wheel" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-07-23T00:00:00' is outdated compared to repository date '2026-05-11T09:01:19'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - }, - "W010": { - "source_file": "package.json", - "description": "codeRepository uses Git shorthand instead of full URL: 'github:ElektraInitiative/libelektra'" - } - } - }, "FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization": { "url": "https://github.com/FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization", "pitfalls": {}, @@ -314,28 +225,6 @@ } } }, - "LanguageMachines/foliautils": { - "url": "https://github.com/LanguageMachines/foliautils", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: icu, libxml2, ticcutils, libfolia" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'foliautils'" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, "LanguageMachines/frog": { "url": "https://github.com/LanguageMachines/frog", "pitfalls": {}, @@ -527,16 +416,6 @@ } } }, - "Pakillo/grateful": { - "url": "https://github.com/Pakillo/grateful", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: desc, knitr, remotes, renv, rmarkdown, rstudioapi, utils" - } - } - }, "ParaStation/psmpi": { "url": "https://github.com/ParaStation/psmpi", "pitfalls": { @@ -644,74 +523,6 @@ } } }, - "Unknown": { - "url": "https://gricad-gitlab.univ-grenoble-alpes.fr/bidegarb/nautil", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: Maple" - }, - "W004": { - "source_file": "", - "description": "Programming languages in metadata do not have version specifications" - } - } - }, - "aaronmck/Badread": { - "url": "https://github.com/aaronmck/Badread", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'GPL v3.0'" - }, - "P016": { - "source_file": "", - "description": "the correct URL is https://github.com/aaronmck/Badread, and the one found in codemeta.json is https://github.com/rrwick/Badread" - } - }, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: edlib, numpy, matplotlib, scipy" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2019-03-01T00:00:00' is outdated compared to repository date '2021-11-20T03:09:52'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, - "ajpelu/likelihoodTools": { - "url": "https://github.com/ajpelu/likelihoodTools", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.1.0' does not match version '1.0.0' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: dplyr, ggplot2, rlang" - }, - "W003": { - "source_file": "", - "description": "Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/ajpelu/likelihoodTools/e0d8fdb5b69d27a641ffc4731e8c2e5b6a21b67c/LICENSE.md" - } - } - }, "amd/mumps-build": { "url": "https://github.com/amd/mumps-build", "pitfalls": { @@ -737,33 +548,6 @@ } } }, - "aravind-j/EvaluateCore": { - "url": "https://github.com/aravind-j/EvaluateCore", - "pitfalls": { - "P001": { - "source_file": "codemeta.json; codemeta.json; DESCRIPTION", - "description": "version '0.1.3.9000' does not match release version 'CRAN_0.1.4'; version '0.1.3.9000' does not match release version 'CRAN_0.1.4'; version '0.1.4.9000' does not match release version 'CRAN_0.1.4'" - }, - "P009": { - "source_file": "DESCRIPTION", - "description": "codeRepository points to homepage instead of repository: https://github.com/aravind-j/EvaluateCore\n https://CRAN.R-project.org/package=EvaluateCore\n https://aravind-j.github.io/EvaluateCore/\n https://doi.org/10.5281/zenodo.3875930" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.1.3.9000' does not match version '0.1.4.9000' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: agricolae, boot, car, cluster, dplyr, entropy, ggcorrplot, ggplot2, ggtext, grDevices, gridExtra, kSamples, mathjaxr, missMDA, psych, reshape2, Rdpack, stats, tibble, vegan" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: R" - } - } - }, "assume-framework/assume": { "url": "https://github.com/assume-framework/assume", "pitfalls": { @@ -806,41 +590,6 @@ } } }, - "bernd-mueller/snoke": { - "url": "https://github.com/bernd-mueller/snoke", - "pitfalls": { - "P001": { - "source_file": "pom.xml", - "description": "version '1.0-SNAPSHOT' does not match release version '1.1'" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'https://spdx.org/licenses/CC-BY-NC-SA-4.0'" - }, - "P014": { - "source_file": "codemeta.json", - "description": "Identifier uses bare DOI instead of full URL: '10.5281/zenodo.4680086\t'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '1.1' does not match version '1.0-SNAPSHOT' in pom.xml" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: Java 8" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2021-02-19T00:00:00' is outdated compared to repository date '2026-02-06T13:12:05'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Java" - } - } - }, "bioconductor-source/treeio": { "url": "https://github.com/bioconductor-source/treeio", "pitfalls": { @@ -860,40 +609,6 @@ } } }, - "brmanuel/calliope": { - "url": "https://github.com/brmanuel/calliope", - "pitfalls": { - "P009": { - "source_file": "setup.py", - "description": "codeRepository points to homepage instead of repository: https://www.callio.pe/" - }, - "P016": { - "source_file": "", - "description": "the correct URL is https://github.com/brmanuel/calliope, and the one found in codemeta.json is https://github.com/calliope-project/calliope" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2018-06-04T00:00:00' is outdated compared to repository date '2022-11-23T01:55:35'" - } - } - }, - "c-torre/replication-recanatesi-2015": { - "url": "https://github.com/c-torre/replication-recanatesi-2015", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W004": { - "source_file": "", - "description": "Programming languages in metadata do not have version specifications" - } - } - }, "caltechlibrary/admin-shell-scripts": { "url": "https://github.com/caltechlibrary/admin-shell-scripts", "pitfalls": {}, @@ -912,29 +627,6 @@ } } }, - "capstone-insper/drone-swarm-search": { - "url": "https://github.com/capstone-insper/drone-swarm-search", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.0.3' does not match release version '0.2.6'" - } - }, - "warnings": { - "W001": { - "source_file": "package.json", - "description": "contains software requirements without versions: wheel, h5py, xarray, python-dotenv" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-04-25T00:00:00' is outdated compared to repository date '2026-05-15T17:16:03'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, "caseyyoungflesh/MCMCvis": { "url": "https://github.com/caseyyoungflesh/MCMCvis", "pitfalls": { @@ -990,62 +682,12 @@ } } }, - "dbbs-lab/bsb": { - "url": "https://github.com/dbbs-lab/bsb", + "electronicvisions/releases-ebrains": { + "url": "https://github.com/electronicvisions/releases-ebrains", "pitfalls": { - "P001": { - "source_file": "pyproject.toml", - "description": "version '1.0.0' does not match release version '7.3.1'" - }, - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P017": { + "P014": { "source_file": "codemeta.json", - "description": "version '7.3.1' does not match version '1.0.0' in pyproject.toml" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: hatchling" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2026-04-16T00:00:00' is outdated compared to repository date '2026-05-05T18:14:57'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Python" - } - } - }, - "dynamicslab/pysindy": { - "url": "https://github.com/dynamicslab/pysindy", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.2.3' does not match release version '2.1.0'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: scipy, typing_extensions, setuptools, setuptools-scm" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2021-10-21T00:00:00' is outdated compared to repository date '2026-05-21T17:35:55'" - } - } - }, - "electronicvisions/releases-ebrains": { - "url": "https://github.com/electronicvisions/releases-ebrains", - "pitfalls": { - "P014": { - "source_file": "codemeta.json", - "description": "Identifier uses bare DOI instead of full URL: '10.5281/ZENODO.8375522'" + "description": "Identifier uses bare DOI instead of full URL: '10.5281/ZENODO.8375522'" } }, "warnings": { @@ -1161,25 +803,6 @@ } } }, - "geospace-code/pymap3d": { - "url": "https://github.com/geospace-code/pymap3d", - "pitfalls": { - "P014": { - "source_file": "codemeta.json", - "description": "Identifier uses bare DOI instead of full URL: '10.21105/joss.00580'" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Python" - } - } - }, "grycap/im-client": { "url": "https://github.com/grycap/im-client", "pitfalls": { @@ -1199,34 +822,6 @@ } } }, - "iljah/hdintegrator": { - "url": "https://github.com/iljah/hdintegrator", - "pitfalls": {}, - "warnings": {} - }, - "instatdealii/idealii": { - "url": "https://github.com/instatdealii/idealii", - "pitfalls": { - "P008": { - "source_file": "codemeta.json", - "description": "Software requirements contain invalid URLs: www.github.com/dealii/dealii" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: www.github.com/dealii/dealii" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-08-15T00:00:00' is outdated compared to repository date '2025-10-13T13:52:44'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++, CMake, Hack" - } - } - }, "jonas-ellert/linear-time-runs": { "url": "https://github.com/jonas-ellert/linear-time-runs", "pitfalls": {}, @@ -1252,29 +847,6 @@ } } }, - "khinsen/MMTK": { - "url": "https://github.com/khinsen/MMTK", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '2.7.13' does not match release version 'rel2.7.13'" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: https://numpy.org/, https://github.com/khinsen/ScientificPython/" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2023-02-17T00:00:00' is outdated compared to repository date '2025-12-09T04:15:15'" - }, - "W004": { - "source_file": "", - "description": "Programming languages in metadata do not have version specifications" - } - } - }, "lecfab/rescience-gorder": { "url": "https://github.com/lecfab/rescience-gorder", "pitfalls": {}, @@ -1324,16 +896,6 @@ } } }, - "mdstephenserdc/network_representativeness": { - "url": "https://github.com/mdstephenserdc/network_representativeness", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": {} - }, "megasanjay/testrepository": { "url": "https://github.com/megasanjay/testrepository", "pitfalls": {}, @@ -1362,66 +924,6 @@ } } }, - "mikldk/mitolina": { - "url": "https://github.com/mikldk/mitolina", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P013": { - "source_file": "codemeta.json", - "description": "License does not specify version: 'GPL v2.0'" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: methods" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2019-02-18T00:00:00' is outdated compared to repository date '2022-01-19T12:39:43'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, - "ms609/Quartet": { - "url": "https://github.com/ms609/Quartet", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: ape, lifecycle, PlotTools, viridisLite" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'Quartet'" - } - } - }, - "ms609/TreeDist": { - "url": "https://github.com/ms609/TreeDist", - "pitfalls": { - "P001": { - "source_file": "codemeta.json; DESCRIPTION", - "description": "version '2.14.0.9000' does not match release version '2.14.0'; version '2.14.0.9000' does not match release version '2.14.0'" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: stats, colorspace, shiny, shinyjs" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'TreeDist'" - } - } - }, "ms609/TreeSearch": { "url": "https://github.com/ms609/TreeSearch", "pitfalls": { @@ -1441,25 +943,6 @@ } } }, - "munich-quantum-toolkit/core": { - "url": "https://github.com/munich-quantum-toolkit/core", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '3.0.0' does not match release version '3.6.1'" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2024-11-07T00:00:00' is outdated compared to repository date '2026-05-21T12:30:23'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, "naaci/watermarking": { "url": "https://github.com/naaci/watermarking", "pitfalls": {}, @@ -1531,56 +1014,6 @@ } } }, - "phreppo/bait": { - "url": "https://github.com/phreppo/bait", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - }, - "P016": { - "source_file": "", - "description": "the correct URL is https://github.com/phreppo/bait, and the one found in codemeta.json is git+https://github.com/parof/bait" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2021-04-26T00:00:00' is outdated compared to repository date '2022-05-17T04:25:30'" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: Java" - } - } - }, - "proycon/colibri-core": { - "url": "https://github.com/proycon/colibri-core", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "file contains unreplaced template placeholders" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: wheel, Cython" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: C++, Cython" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'colibricore'" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, "r-spatialecology/landscapemetrics": { "url": "https://github.com/r-spatialecology/landscapemetrics", "pitfalls": { @@ -1604,39 +1037,6 @@ } } }, - "rOpenGov/r311": { - "url": "https://github.com/rOpenGov/r311", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.4.3' does not match release version '0.4.4'" - }, - "P010": { - "source_file": "LICENSE", - "description": "file only contains copyright information without actual license terms" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.4.3' does not match version '0.4.4' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: curl, jsonlite, tools, utils" - } - } - }, - "rcsb/py-rcsbsearchapi": { - "url": "https://github.com/rcsb/py-rcsbsearchapi", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "contains software requirements without versions: tqdm" - } - } - }, "riatelab/tanaka": { "url": "https://github.com/riatelab/tanaka", "pitfalls": {}, @@ -1647,115 +1047,35 @@ } } }, - "rism-digital/verovio": { - "url": "https://github.com/rism-digital/verovio", + "ropensci/geojson": { + "url": "https://github.com/ropensci/geojson", "pitfalls": { - "P001": { - "source_file": "pyproject.toml", - "description": "version '0.1.0' does not match release version 'ersion-6.2.0'" - }, - "P009": { - "source_file": "setup.py", - "description": "codeRepository points to homepage instead of repository: https://www.verovio.org" + "P010": { + "source_file": "LICENSE", + "description": "file only contains copyright information without actual license terms" }, "P017": { "source_file": "codemeta.json", - "description": "version '6.3.0-dev' does not match version '0.1.0' in pyproject.toml" + "description": "version '0.3.4' does not match version '0.3.5.9000' in DESCRIPTION" } }, "warnings": { - "W004": { + "W001": { "source_file": "codemeta.json", - "description": "Programming languages without versions: C++, Python, JavaScript, Java" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'Verovio'" + "description": "contains software requirements without versions: methods, methods, sp, sp, magrittr, magrittr, lazyeval, lazyeval" } } }, - "ropensci/CoordinateCleaner": { - "url": "https://github.com/ropensci/CoordinateCleaner", + "ropensci/tradestatistics": { + "url": "https://github.com/ropensci/tradestatistics", "pitfalls": { - "P001": { - "source_file": "DESCRIPTION; codemeta.json", - "description": "version '3.0.1' does not match release version '2.0-4'; version '2.0.20' does not match release version '2.0-4'" - }, - "P008": { + "P009": { "source_file": "codemeta.json", - "description": "Software requirements contain invalid URLs: https://sysreqs.r-hub.io/get/gdal" + "description": "codeRepository points to homepage instead of repository: https://docs.ropensci.org/tradestatistics/" }, "P017": { "source_file": "codemeta.json", - "description": "version '2.0.20' does not match version '3.0.1' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "DESCRIPTION", - "description": "contains software requirements without versions: dplyr, dplyr, geosphere, geosphere, ggplot2, ggplot2, graphics, graphics, grDevices, grDevices, methods, methods, rgbif, rgbif, stats, stats, terra, tidyselect, tidyselect, utils, utils, raster, rgeos, rgdal, rnaturalearth, sp, https://sysreqs.r-hub.io/get/gdal, https://sysreqs.r-hub.io/get/libgdal" - }, - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: R" - }, - "W006": { - "source_file": "metadata files", - "description": "Identifier is a name instead of valid unique identifier: 'CoordinateCleaner'" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" - } - } - }, - "ropensci/USAboundariesData": { - "url": "https://github.com/ropensci/USAboundariesData", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.5.0' does not match release version '0.5.1'" - }, - "P013": { - "source_file": "DESCRIPTION", - "description": "License does not specify version: 'CC BY-NC-SA 4.0'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.5.0' does not match version '0.5.1' in DESCRIPTION" - } - }, - "warnings": {} - }, - "ropensci/geojson": { - "url": "https://github.com/ropensci/geojson", - "pitfalls": { - "P010": { - "source_file": "LICENSE", - "description": "file only contains copyright information without actual license terms" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '0.3.4' does not match version '0.3.5.9000' in DESCRIPTION" - } - }, - "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "contains software requirements without versions: methods, methods, sp, sp, magrittr, magrittr, lazyeval, lazyeval" - } - } - }, - "ropensci/tradestatistics": { - "url": "https://github.com/ropensci/tradestatistics", - "pitfalls": { - "P009": { - "source_file": "codemeta.json", - "description": "codeRepository points to homepage instead of repository: https://docs.ropensci.org/tradestatistics/" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version '4.4.0' does not match version '5.0.0' in DESCRIPTION" + "description": "version '4.4.0' does not match version '5.0.0' in DESCRIPTION" } }, "warnings": { @@ -1807,16 +1127,6 @@ } } }, - "sje30/rescience-hor": { - "url": "https://github.com/sje30/rescience-hor", - "pitfalls": {}, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "Programming languages without versions: R" - } - } - }, "sorokinvld/LLFn": { "url": "https://github.com/sorokinvld/LLFn", "pitfalls": {}, @@ -1827,33 +1137,6 @@ } } }, - "sourmash-bio/sourmash": { - "url": "https://github.com/sourmash-bio/sourmash", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '1.0.0' does not match release version '4.9.4'" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version 'v1.0.0' does not match version '4.9.5-dev' in pyproject.toml" - } - }, - "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "contains software requirements without versions: numpy, matplotlib, scipy, cffi, -e .[all]" - }, - "W002": { - "source_file": "metadata files", - "description": "dateModified '2016-06-07T00:00:00' is outdated compared to repository date '2026-05-18T20:38:45'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, "sscu-budapest/lead-contamination-hungary": { "url": "https://github.com/sscu-budapest/lead-contamination-hungary", "pitfalls": {}, @@ -2002,25 +1285,6 @@ } } }, - "vc1492a/PyNomaly": { - "url": "https://github.com/vc1492a/PyNomaly", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "version '0.2.0' does not match release version '0.3.5'" - } - }, - "warnings": { - "W002": { - "source_file": "metadata files", - "description": "dateModified '2018-05-07T00:00:00' is outdated compared to repository date '2026-05-16T16:32:24'" - }, - "W007": { - "source_file": "codemeta.json", - "description": "identifier field is empty or missing" - } - } - }, "viznuv/transforEmotion": { "url": "https://github.com/viznuv/transforEmotion", "pitfalls": { @@ -2066,5 +1330,1428 @@ "description": "identifier field is empty or missing" } } + }, + "Duke-GCB/calrissian": { + "url": "https://github.com/Duke-GCB/calrissian", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.16.0' does not match release version '0.18.1'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: hatchling" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2023-10-23T00:00:00' is outdated compared to repository date '2026-06-24T14:23:37'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python" + } + } + }, + "aravind-j/EvaluateCore": { + "url": "https://github.com/aravind-j/EvaluateCore", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.1.5', codemeta.json version '0.1.5' and DESCRIPTION version '0.1.5.900' does not match release version 'CRAN_0.1.5'" + }, + "P009": { + "source_file": "DESCRIPTION", + "description": "P009 detected: DESCRIPTION codeRepository points to homepage instead of repository: https://github.com/aravind-j/EvaluateCore\n https://CRAN.R-project.org/package=EvaluateCore\n https://aravind-j.github.io/EvaluateCore/\n https://doi.org/10.5281/zenodo.3875930" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.1.5' does not match DESCRIPTION version '0.1.5.900'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: agricolae, boot, car, cluster, dplyr, entropy, ggcorrplot, ggplot2, ggtext, grDevices, gridExtra, kSamples, mathjaxr, missMDA, psych, reshape2, Rdpack, stats, tibble, vegan" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "ms609/Quartet": { + "url": "https://github.com/ms609/Quartet", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: ape, PlotTools" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'Quartet'" + } + } + }, + "rOpenGov/r311": { + "url": "https://github.com/rOpenGov/r311", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.4.3' does not match release version '0.4.4'" + }, + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.4.3' does not match DESCRIPTION version '0.4.4'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: curl, jsonlite, tools, utils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "A-Klingenberg/VIPER": { + "url": "https://github.com/A-Klingenberg/VIPER", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.1089/cmb.2024.0866'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-03-27T00:00:00' is outdated compared to repository date '2025-05-15T15:50:26'" + } + } + }, + "AI4LAM/awesome-ai4lam": { + "url": "https://github.com/AI4LAM/awesome-ai4lam", + "pitfalls": { + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/AI4LAM/awesome-ai4lam, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/mhucka/awesome-ai4lam" + } + }, + "warnings": { + "W003": { + "source_file": "README.md", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/AI4LAM/awesome-ai4lam/main/README.md" + } + } + }, + "AgrDataSci/gosset": { + "url": "https://github.com/AgrDataSci/gosset", + "pitfalls": { + "P009": { + "source_file": "codemeta.json", + "description": "P009 detected: codemeta.json codeRepository points to homepage instead of repository: https://agrdatasci.github.io/gosset/" + }, + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/AgrDataSci/gosset, and the ones found in codemeta.json are mismatched: codemeta.json: https://agrdatasci.github.io/gosset/" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: methods, BradleyTerry2, DescTools, ggplot2, ggparty, ggrepel, lifecycle, partykit, PlackettLuce, psychotools, qvcalc, stats, tidyr, utils, patchwork, parallel" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'gosset'" + } + } + }, + "CSCfi/PID-MS-API": { + "url": "https://github.com/CSCfi/PID-MS-API", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and pom.xml version '1.1.' does not match pom.xml version '1.1.7'" + } + }, + "warnings": { + "W001": { + "source_file": "pom.xml", + "description": "W001 detected: pom.xml contains software requirements without versions: quarkus-hibernate-orm-rest-data-panache, quarkus-jdbc-mariadb, quarkus-config-yaml, quarkus-resteasy-jackson, quarkus-agroal, quarkus-smallrye-health, quarkus-micrometer-registry-prometheus, quarkus-arc, quarkus-junit5, rest-assured, quarkus-smallrye-openapi" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2023-05-24T00:00:00' is outdated compared to repository date '2025-04-22T10:09:05'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Java" + } + } + }, + "FC4E-CAT/fc4e-cat-ui": { + "url": "https://github.com/FC4E-CAT/fc4e-cat-ui", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.3.1' does not match release version '3.2.0'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and package.json version '1.3.1' does not match package.json version '3.2.0'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-09-11T00:00:00' is outdated compared to repository date '2025-09-23T11:10:28'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Typescript" + } + } + }, + "INM-6/beaverdam": { + "url": "https://github.com/INM-6/beaverdam", + "pitfalls": {}, + "warnings": {} + }, + "IPBES-Data/IPBES.R": { + "url": "https://github.com/IPBES-Data/IPBES.R", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: DESCRIPTION version '0.4.2' and codemeta.json version '0.2.8' does not match release version '0.4.0'" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/IPBES-Data/IPBES.R, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/rkrug/IPBES.R" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.2.8' does not match DESCRIPTION version '0.4.2'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: openalexR, dplyr, writexl, tidygraph, ggplot2, ggraph, networkD3, httr2, tibble, tidyterra, terra, countrycode, geodata, DT" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "JeffreyRStevens/cocoon": { + "url": "https://github.com/JeffreyRStevens/cocoon", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: cli, dplyr, lifecycle" + }, + "W003": { + "source_file": "metadata files", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/JeffreyRStevens/cocoon/main/LICENSE.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "JeremyGelb/geocmeans": { + "url": "https://github.com/JeremyGelb/geocmeans", + "pitfalls": { + "P001": { + "source_file": "DESCRIPTION", + "description": "P001 detected: DESCRIPTION version '0.3.4.1.9000' does not match release version '0.3.4'" + } + }, + "warnings": {} + }, + "LEEF-UZH/LEEF.archive.default": { + "url": "https://github.com/LEEF-UZH/LEEF.archive.default", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.0.0' and DESCRIPTION version '1.0.0' does not match release version '1.1.0'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: openssl, yaml" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "LEEF-UZH/LEEF.measurement.flowcam": { + "url": "https://github.com/LEEF-UZH/LEEF.measurement.flowcam", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.0.0' and DESCRIPTION version '1.0.0' does not match release version '1.1.0'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: data.table, yaml, utils, plyr, dplyr, purrr, magrittr, e1071, tidyselect, stats, loggit, randomForest" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "LanguageMachines/dimbl": { + "url": "https://github.com/LanguageMachines/dimbl", + "pitfalls": {}, + "warnings": {} + }, + "LanguageMachines/mbt": { + "url": "https://github.com/LanguageMachines/mbt", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: libxml2, ticcutils, timbl" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: C++" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'mbt'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "LanguageMachines/timbl": { + "url": "https://github.com/LanguageMachines/timbl", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: libxml2, ticcutils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: C++" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'timbl'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "MITDDC/plnr-1971-1982": { + "url": "https://github.com/MITDDC/plnr-1971-1982", + "pitfalls": {}, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Micro-Planner" + } + } + }, + "OneFineStarstuff/OneFineStarstuff.github.io": { + "url": "https://github.com/OneFineStarstuff/OneFineStarstuff.github.io", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json, Dockerfile and package.json version '1.2.0' does not match metadata files version '1.0.0', package.json version '1.0.0', metadata files version '1.0.0'" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: fastapi, uvicorn, torch, transformers, Pillow, whisper, ultralytics, pyttsx3, loguru, nest_asyncio, setuptools, wheel" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-12-18T00:00:00' is outdated compared to repository date '2026-06-23T06:29:43'" + } + } + }, + "R-Lum/xlum": { + "url": "https://github.com/R-Lum/xlum", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: utils, methods" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'xlum'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#Concept" + } + } + }, + "R3BRootGroup/frs": { + "url": "https://github.com/R3BRootGroup/frs", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version 'dec25' does not match release version 'jun26'" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: FairRoot, FairSoft, R3BRoot" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2025-12-22T00:00:00' is outdated compared to repository date '2026-06-03T15:22:25'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: C, C++" + }, + "W005": { + "source_file": "codemeta.json", + "description": "W005 detected: codemeta.json Multiple requirements written as single string: 'FairRoot, FairSoft, R3BRoot'" + } + } + }, + "adamhsparks/ChickpeaAscoDispersal": { + "url": "https://github.com/adamhsparks/ChickpeaAscoDispersal", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: graphics, mgcViz" + }, + "W003": { + "source_file": "README.md", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/adamhsparks/ChickpeaAscoDispersal/master/README.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'ChickpeaAscoDispersal'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.tidyverse.org/lifecycle/#stable" + } + } + }, + "adeverse/adephylo": { + "url": "https://github.com/adeverse/adephylo", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.1.17' does not match release version '1.1-17'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '1.1.17' does not match DESCRIPTION version '1.1-17'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: methods, phylobase, ape, adegenet" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "adrijmz/os_group_project": { + "url": "https://github.com/adrijmz/os_group_project", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.11200165'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-04-20T00:00:00' is outdated compared to repository date '2024-05-21T19:16:01'" + } + } + }, + "amasson84/costcalc": { + "url": "https://github.com/amasson84/costcalc", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: CODEMETA.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.1469035'" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/amasson84/costcalc, and the ones found in codemeta.json are mismatched: CODEMETA.json: https://github.com/epfllibrary/costcalc" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and package.json version '2.4' does not match package.json version '1.0.0'" + } + }, + "warnings": {} + }, + "aravind-j/rpcss": { + "url": "https://github.com/aravind-j/rpcss", + "pitfalls": { + "P009": { + "source_file": "DESCRIPTION", + "description": "P009 detected: DESCRIPTION codeRepository points to homepage instead of repository: https://github.com/aravind-j/rpcss\n https://cran.r-project.org/package=rpcss\n https://aravind-j.github.io/rpcss/\n https://doi.org/10.5281/zenodo.14889174" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json, DESCRIPTION and CITATION.cff version '0.1.1' does not match DESCRIPTION version '0.1.1.9000', metadata files version '0.1.1.9000'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: dplyr, FactoMineR, ggplot2, ggrepel, gslnls, mathjaxr, methods, Rdpack, stats, tidyr, utils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "atsyplenkov/rp5pik": { + "url": "https://github.com/atsyplenkov/rp5pik", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.0.2' does not match release version '0.0.2.2'" + }, + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.0.2' does not match DESCRIPTION version '0.0.2.2'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: cli, dplyr, lifecycle, lubridate, purrr, rvest, stringr, terra, tibble, tidyr" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://lifecycle.r-lib.org/articles/stages.html#experimental" + } + } + }, + "bihealth/vcfpy": { + "url": "https://github.com/bihealth/vcfpy", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.7.0' and pyproject.toml version '0.14.2' does not match release version '0.14.1'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and pyproject.toml version 'v0.7.0' does not match pyproject.toml version '0.14.2'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: hatchling" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2016-09-28T00:00:00' is outdated compared to repository date '2026-04-25T08:19:41'" + } + } + }, + "biogo/biogo": { + "url": "https://github.com/biogo/biogo", + "pitfalls": { + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'BSD-3 like'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2017-01-05T00:00:00' is outdated compared to repository date '2026-06-12T09:49:10'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "boydorr/TraitExtraction.jl": { + "url": "https://github.com/boydorr/TraitExtraction.jl", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and Project.toml version 'v0.1.0' does not match Project.toml version '0.1.0'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: julia" + } + } + }, + "caltechlibrary/irdm_harvester": { + "url": "https://github.com/caltechlibrary/irdm_harvester", + "pitfalls": { + "P008": { + "source_file": "requirements.txt", + "description": "P008 detected: requirements.txt Software requirements contain invalid URLs: https://github.com/caltechlibrary/dimcli@cris-auth" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: dimcli @ git+https://github.com/caltechlibrary/dimcli@cris-auth" + } + } + }, + "cetoolbox/cetoolbox": { + "url": "https://github.com/cetoolbox/cetoolbox", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.6.0' does not match release version '1.6.1'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Java" + } + } + }, + "daliwang/kmELM": { + "url": "https://github.com/daliwang/kmELM", + "pitfalls": {}, + "warnings": {} + }, + "destination-earth/DestinE_ESA_GFTS": { + "url": "https://github.com/destination-earth/DestinE_ESA_GFTS", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: https://github.com/destination-earth/DestinE_ESA_GFTS/blob/main/.binder/environment.yml, chartpress, click, conda-lock" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: Programming languages in metadata do not have version specifications" + } + } + }, + "donomii/quon-jupyter": { + "url": "https://github.com/donomii/quon-jupyter", + "pitfalls": { + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'GPL v3.0'" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/donomii/quon-jupyter, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/gopherdata/gophernotes" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2017-12-13T00:00:00' is outdated compared to repository date '2020-12-22T00:42:25'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "dutta-alankar/AstroPlasma": { + "url": "https://github.com/dutta-alankar/AstroPlasma", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: hatchling" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: C++" + } + } + }, + "elipousson/bingmapr": { + "url": "https://github.com/elipousson/bingmapr", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: httr2, magick, sf, utils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "elipousson/sharepointr": { + "url": "https://github.com/elipousson/sharepointr", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.1.0' does not match DESCRIPTION version '0.1.0.9000'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: AzureGraph, cli, glue, httr, httr2, lifecycle, Microsoft365R, rlang, stringr, utils, vctrs" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://lifecycle.r-lib.org/articles/stages.html#experimental" + } + } + }, + "epfllibrary/costcalc": { + "url": "https://github.com/epfllibrary/costcalc", + "pitfalls": { + "P001": { + "source_file": "package.json", + "description": "P001 detected: package.json version '1.0.0' does not match release version '2.4'" + }, + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: CODEMETA.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.1469035'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and package.json version '2.4' does not match package.json version '1.0.0'" + } + }, + "warnings": {} + }, + "explore-platform/s-disco": { + "url": "https://github.com/explore-platform/s-disco", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: Visualiser" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2023-07-01T00:00:00' is outdated compared to repository date '2024-05-21T13:59:28'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python, Java" + } + } + }, + "fairdataihub/SODA-for-SPARC": { + "url": "https://github.com/fairdataihub/SODA-for-SPARC", + "pitfalls": {}, + "warnings": {} + }, + "fchuffar/gse2study": { + "url": "https://github.com/fchuffar/gse2study", + "pitfalls": { + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/fchuffar/gse2study, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/fchuffar/ptlmapper" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "fospald/heamd": { + "url": "https://github.com/fospald/heamd", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'GPL'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2018-10-02T00:00:00' is outdated compared to repository date '2025-04-21T09:24:58'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "gabrielblain/SPIChanges": { + "url": "https://github.com/gabrielblain/SPIChanges", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: gamlss, gamlss.dist, lubridate, MuMIn, rlang, spsUtil, stats, brglm2, zoo" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "heuermh/sea-eagle": { + "url": "https://github.com/heuermh/sea-eagle", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.10', codemeta.json version '0.10' and pom.xml version '1.0-SNAPSHOT' does not match release version 'sea-eagle-0.10'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and pom.xml version '0.10' does not match pom.xml version '1.0-SNAPSHOT'" + } + }, + "warnings": { + "W001": { + "source_file": "pom.xml", + "description": "W001 detected: pom.xml contains software requirements without versions: tamboui-toolkit, tamboui-jline3-backend, picocli, dsh-compress, duckdb_jdbc, slf4j-api, slf4j-simple, athena, guava" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2026-06-26T00:00:00' is outdated compared to repository date '2026-06-30T01:43:38'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Java" + } + } + }, + "hykelvinlee42/RRLeo-Photometry": { + "url": "https://github.com/hykelvinlee42/RRLeo-Photometry", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.8190781'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python" + } + } + }, + "interTwin-eu/dcnios": { + "url": "https://github.com/interTwin-eu/dcnios", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.0.0' and package.json version '0.0.0' does not match release version '0.0.1'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and package.json version '1.0.0' does not match package.json version '0.0.0'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-02-01T00:00:00' is outdated compared to repository date '2025-12-11T14:27:54'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "janelia-kicad/trinamic-wiring": { + "url": "https://github.com/janelia-kicad/trinamic-wiring", + "pitfalls": {}, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-07-31T00:00:00' is outdated compared to repository date '2025-05-14T07:09:57'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: KiCad" + } + } + }, + "jimbrig/RPkg": { + "url": "https://github.com/jimbrig/RPkg", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: DBI, fs, glue, jsonlite, lubridate, plumber, pool, safer, sessioninfo, stringr, tibble, urltools, utils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "justinbois/bebi103": { + "url": "https://github.com/justinbois/bebi103", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.1.28' does not match release version '0.1.26'" + }, + "P013": { + "source_file": "setup.py", + "description": "P013 detected: setup.py License does not specify version: 'BSD'" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: contourpy, numpy, numba, xarray, scipy, pandas, polars, tqdm, matplotlib, colorcet, holoviews" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python" + } + } + }, + "karthik/wesanderson": { + "url": "https://github.com/karthik/wesanderson", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "leonawicz/rtrek": { + "url": "https://github.com/leonawicz/rtrek", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: downloader, dplyr, ggplot2, jpeg, jsonlite, memoise, png, purrr, rvest, tibble, tidyr, xml2" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "lifewatch/eva": { + "url": "https://github.com/lifewatch/eva", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.0.1' does not match release version '0.1.0'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python, R" + } + } + }, + "lionandjelka/QhX1": { + "url": "https://github.com/lionandjelka/QhX1", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: numpy, pandas, scipy, scikit-learn, scikit-optimize, libwwz, colorednoise, tqdm, panel, hvplot, bokeh, datashader, pyarrow, dask[dataframe], traitlets, wheel" + } + } + }, + "meng630/GMD_E3SM_SCM": { + "url": "https://github.com/meng630/GMD_E3SM_SCM", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: sphinx, sphinx_rtd_theme, nbsphinx, sphinx-reload" + } + } + }, + "meng630/e3sm_maint-2.0": { + "url": "https://github.com/meng630/e3sm_maint-2.0", + "pitfalls": {}, + "warnings": {} + }, + "mikemahoney218/mvdf": { + "url": "https://github.com/mikemahoney218/mvdf", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: methods, rlang, glue, proceduralnames" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "mlr-org/mcboost": { + "url": "https://github.com/mlr-org/mcboost", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: DESCRIPTION version '0.4.4.9000' and codemeta.json version '0.4.0' does not match release version '0.4.3'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.4.0' does not match DESCRIPTION version '0.4.4.9000'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: backports, rmarkdown, rpart, glmnet" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'mcboost'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://lifecycle.r-lib.org/articles/stages.html#experimental" + } + } + }, + "mscroggs/pyfax": { + "url": "https://github.com/mscroggs/pyfax", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: requests, feedparser, sphinx-autoapi" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-02-06T00:00:00' is outdated compared to repository date '2025-02-13T11:09:23'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "nkrofta/Topological-Groups": { + "url": "https://github.com/nkrofta/Topological-Groups", + "pitfalls": {}, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Isabelle" + } + } + }, + "riatelab/cartography": { + "url": "https://github.com/riatelab/cartography", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: classInt, curl, graphics, methods, png, raster, Rcpp, sf, sp, stats, utils, grDevices" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'cartography'" + } + } + }, + "riatelab/flows": { + "url": "https://github.com/riatelab/flows", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: igraph, graphics, mapsf, utils, stats" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "ropensci/ReLTER": { + "url": "https://github.com/ropensci/ReLTER", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: dplyr, dtplyr, ggforce, ggspatial, geojsonsf, ggplot2, httr2, jqr, jsonlite, lifecycle, lubridate, magrittr, purrr, qrcode, utils, units, tibble, stringr, terra" + }, + "W003": { + "source_file": "metadata files", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/ropensci/ReLTER/main/LICENSE.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "ropensci/sofa": { + "url": "https://github.com/ropensci/sofa", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.4.0' does not match release version '0.4.1'" + }, + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.4.0' does not match DESCRIPTION version '0.4.1'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: mime" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: http://www.repostatus.org/#active" + } + } + }, + "rreinecke/global-gradient-based-groundwater-model": { + "url": "https://github.com/rreinecke/global-gradient-based-groundwater-model", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.0.0' does not match release version '1.1'" + }, + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P009": { + "source_file": "codemeta.json", + "description": "P009 detected: codemeta.json codeRepository points to homepage instead of repository: http://globalgroundwatermodel.org/" + }, + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'GPL v3.0'" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/rreinecke/global-gradient-based-groundwater-model, and the ones found in codemeta.json are mismatched: codemeta.json: http://globalgroundwatermodel.org/" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2018-01-02T00:00:00' is outdated compared to repository date '2026-03-11T10:32:43'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "rsdoiel/gameset": { + "url": "https://github.com/rsdoiel/gameset", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Go" + } + } + }, + "slugb0t/FlaskBlog": { + "url": "https://github.com/slugb0t/FlaskBlog", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.1.2' and codemeta.json version '0.1.2' does not match release version '111.973987.123'" + }, + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.13942931'" + } + }, + "warnings": {} + }, + "usa-npn/rnpn": { + "url": "https://github.com/usa-npn/rnpn", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.4.0', codemeta.json version '1.4.0' and DESCRIPTION version '1.4.1.9000' does not match release version '1.4.1'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '1.4.0' does not match DESCRIPTION version '1.4.1.9000'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: dplyr, jsonlite, lifecycle, magrittr, readr, rlang, tibble, tidyr, xml2" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "vrineau/Agatta": { + "url": "https://github.com/vrineau/Agatta", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.8.1' does not match release version '1.0.2'" + }, + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: https://github.com/vrineau/Agatta/blob/main/requirements.txt" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-03-08T00:00:00' is outdated compared to repository date '2026-02-27T10:33:21'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: Programming languages in metadata do not have version specifications" + } + } + }, + "willgryan/PAVER": { + "url": "https://github.com/willgryan/PAVER", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: DESCRIPTION version '0.0.0.9000' and codemeta.json version '0.0.0.9000' does not match release version 'pre-release'" + }, + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/willgryan/PAVER, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/AliSajid/PAVER" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: circlize, ComplexHeatmap, dplyr, dynamicTreeCut, forcats, ggplot2, ggplotify, ggprism, ggpubr, ggrepel, grid, magrittr, purrr, randomcoloR, rlang, smacof, stringr, tibble, tidyr, umap" + }, + "W003": { + "source_file": "metadata files", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/willgryan/PAVER/main/LICENSE.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "ybarborini/jdev-t5A02": { + "url": "https://github.com/ybarborini/jdev-t5A02", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and bower.json version '1.0.0' does not match bower.json version '0.0.1'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-10-10T00:00:00' is outdated compared to repository date '2024-11-22T13:47:13'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: PHP, JS" + } + } + }, + "ypwong22/ELM_SPRUCE": { + "url": "https://github.com/ypwong22/ELM_SPRUCE", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: numpy, xarray, zarr, netCDF4, cftime" + } + } + }, + "zbmed-semtec/doc2vec-doc-relevance": { + "url": "https://github.com/zbmed-semtec/doc2vec-doc-relevance", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P018": { + "source_file": "codemeta.json", + "description": "P018 detected: codemeta.json Identifier uses raw SWHID without resolvable URL: 'swh:1:dir:5939540bdda33571b0969e520360b80d98b2bf2b'" + } + }, + "warnings": {} } } \ No newline at end of file diff --git a/docs/ground_truth/summary_0_3_3.json b/docs/ground_truth/summary_0_3_3.json new file mode 100644 index 0000000..10cb0c3 --- /dev/null +++ b/docs/ground_truth/summary_0_3_3.json @@ -0,0 +1,1425 @@ +{ + "A-Klingenberg/VIPER": { + "url": "https://github.com/A-Klingenberg/VIPER", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.1089/cmb.2024.0866'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-03-27T00:00:00' is outdated compared to repository date '2025-05-15T15:50:26'" + } + } + }, + "AI4LAM/awesome-ai4lam": { + "url": "https://github.com/AI4LAM/awesome-ai4lam", + "pitfalls": { + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/AI4LAM/awesome-ai4lam, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/mhucka/awesome-ai4lam" + } + }, + "warnings": { + "W003": { + "source_file": "README.md", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/AI4LAM/awesome-ai4lam/main/README.md" + } + } + }, + "AgrDataSci/gosset": { + "url": "https://github.com/AgrDataSci/gosset", + "pitfalls": { + "P009": { + "source_file": "codemeta.json", + "description": "P009 detected: codemeta.json codeRepository points to homepage instead of repository: https://agrdatasci.github.io/gosset/" + }, + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/AgrDataSci/gosset, and the ones found in codemeta.json are mismatched: codemeta.json: https://agrdatasci.github.io/gosset/" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: methods, BradleyTerry2, DescTools, ggplot2, ggparty, ggrepel, lifecycle, partykit, PlackettLuce, psychotools, qvcalc, stats, tidyr, utils, patchwork, parallel" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'gosset'" + } + } + }, + "CSCfi/PID-MS-API": { + "url": "https://github.com/CSCfi/PID-MS-API", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and pom.xml version '1.1.' does not match pom.xml version '1.1.7'" + } + }, + "warnings": { + "W001": { + "source_file": "pom.xml", + "description": "W001 detected: pom.xml contains software requirements without versions: quarkus-hibernate-orm-rest-data-panache, quarkus-jdbc-mariadb, quarkus-config-yaml, quarkus-resteasy-jackson, quarkus-agroal, quarkus-smallrye-health, quarkus-micrometer-registry-prometheus, quarkus-arc, quarkus-junit5, rest-assured, quarkus-smallrye-openapi" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2023-05-24T00:00:00' is outdated compared to repository date '2025-04-22T10:09:05'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Java" + } + } + }, + "Duke-GCB/calrissian": { + "url": "https://github.com/Duke-GCB/calrissian", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.16.0' does not match release version '0.18.1'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: hatchling" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2023-10-23T00:00:00' is outdated compared to repository date '2026-06-24T14:23:37'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python" + } + } + }, + "FC4E-CAT/fc4e-cat-ui": { + "url": "https://github.com/FC4E-CAT/fc4e-cat-ui", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.3.1' does not match release version '3.2.0'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and package.json version '1.3.1' does not match package.json version '3.2.0'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-09-11T00:00:00' is outdated compared to repository date '2025-09-23T11:10:28'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Typescript" + } + } + }, + "INM-6/beaverdam": { + "url": "https://github.com/INM-6/beaverdam", + "pitfalls": {}, + "warnings": {} + }, + "IPBES-Data/IPBES.R": { + "url": "https://github.com/IPBES-Data/IPBES.R", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: DESCRIPTION version '0.4.2' and codemeta.json version '0.2.8' does not match release version '0.4.0'" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/IPBES-Data/IPBES.R, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/rkrug/IPBES.R" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.2.8' does not match DESCRIPTION version '0.4.2'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: openalexR, dplyr, writexl, tidygraph, ggplot2, ggraph, networkD3, httr2, tibble, tidyterra, terra, countrycode, geodata, DT" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "JeffreyRStevens/cocoon": { + "url": "https://github.com/JeffreyRStevens/cocoon", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: cli, dplyr, lifecycle" + }, + "W003": { + "source_file": "metadata files", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/JeffreyRStevens/cocoon/main/LICENSE.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "JeremyGelb/geocmeans": { + "url": "https://github.com/JeremyGelb/geocmeans", + "pitfalls": { + "P001": { + "source_file": "DESCRIPTION", + "description": "P001 detected: DESCRIPTION version '0.3.4.1.9000' does not match release version '0.3.4'" + } + }, + "warnings": {} + }, + "LEEF-UZH/LEEF.archive.default": { + "url": "https://github.com/LEEF-UZH/LEEF.archive.default", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.0.0' and DESCRIPTION version '1.0.0' does not match release version '1.1.0'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: openssl, yaml" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "LEEF-UZH/LEEF.measurement.flowcam": { + "url": "https://github.com/LEEF-UZH/LEEF.measurement.flowcam", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.0.0' and DESCRIPTION version '1.0.0' does not match release version '1.1.0'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: data.table, yaml, utils, plyr, dplyr, purrr, magrittr, e1071, tidyselect, stats, loggit, randomForest" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "LanguageMachines/dimbl": { + "url": "https://github.com/LanguageMachines/dimbl", + "pitfalls": {}, + "warnings": {} + }, + "LanguageMachines/mbt": { + "url": "https://github.com/LanguageMachines/mbt", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: libxml2, ticcutils, timbl" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: C++" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'mbt'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "LanguageMachines/timbl": { + "url": "https://github.com/LanguageMachines/timbl", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: libxml2, ticcutils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: C++" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'timbl'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "MITDDC/plnr-1971-1982": { + "url": "https://github.com/MITDDC/plnr-1971-1982", + "pitfalls": {}, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Micro-Planner" + } + } + }, + "OneFineStarstuff/OneFineStarstuff.github.io": { + "url": "https://github.com/OneFineStarstuff/OneFineStarstuff.github.io", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json, Dockerfile and package.json version '1.2.0' does not match metadata files version '1.0.0', package.json version '1.0.0', metadata files version '1.0.0'" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: fastapi, uvicorn, torch, transformers, Pillow, whisper, ultralytics, pyttsx3, loguru, nest_asyncio, setuptools, wheel" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-12-18T00:00:00' is outdated compared to repository date '2026-06-23T06:29:43'" + } + } + }, + "R-Lum/xlum": { + "url": "https://github.com/R-Lum/xlum", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: utils, methods" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'xlum'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#Concept" + } + } + }, + "R3BRootGroup/frs": { + "url": "https://github.com/R3BRootGroup/frs", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version 'dec25' does not match release version 'jun26'" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: FairRoot, FairSoft, R3BRoot" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2025-12-22T00:00:00' is outdated compared to repository date '2026-06-03T15:22:25'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: C, C++" + }, + "W005": { + "source_file": "codemeta.json", + "description": "W005 detected: codemeta.json Multiple requirements written as single string: 'FairRoot, FairSoft, R3BRoot'" + } + } + }, + "adamhsparks/ChickpeaAscoDispersal": { + "url": "https://github.com/adamhsparks/ChickpeaAscoDispersal", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: graphics, mgcViz" + }, + "W003": { + "source_file": "README.md", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/adamhsparks/ChickpeaAscoDispersal/master/README.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'ChickpeaAscoDispersal'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.tidyverse.org/lifecycle/#stable" + } + } + }, + "adeverse/adephylo": { + "url": "https://github.com/adeverse/adephylo", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.1.17' does not match release version '1.1-17'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '1.1.17' does not match DESCRIPTION version '1.1-17'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: methods, phylobase, ape, adegenet" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" + } + } + }, + "adrijmz/os_group_project": { + "url": "https://github.com/adrijmz/os_group_project", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.11200165'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-04-20T00:00:00' is outdated compared to repository date '2024-05-21T19:16:01'" + } + } + }, + "amasson84/costcalc": { + "url": "https://github.com/amasson84/costcalc", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: CODEMETA.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.1469035'" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/amasson84/costcalc, and the ones found in codemeta.json are mismatched: CODEMETA.json: https://github.com/epfllibrary/costcalc" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and package.json version '2.4' does not match package.json version '1.0.0'" + } + }, + "warnings": {} + }, + "aravind-j/EvaluateCore": { + "url": "https://github.com/aravind-j/EvaluateCore", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.1.5', codemeta.json version '0.1.5' and DESCRIPTION version '0.1.5.900' does not match release version 'CRAN_0.1.5'" + }, + "P009": { + "source_file": "DESCRIPTION", + "description": "P009 detected: DESCRIPTION codeRepository points to homepage instead of repository: https://github.com/aravind-j/EvaluateCore\n https://CRAN.R-project.org/package=EvaluateCore\n https://aravind-j.github.io/EvaluateCore/\n https://doi.org/10.5281/zenodo.3875930" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.1.5' does not match DESCRIPTION version '0.1.5.900'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: agricolae, boot, car, cluster, dplyr, entropy, ggcorrplot, ggplot2, ggtext, grDevices, gridExtra, kSamples, mathjaxr, missMDA, psych, reshape2, Rdpack, stats, tibble, vegan" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "aravind-j/rpcss": { + "url": "https://github.com/aravind-j/rpcss", + "pitfalls": { + "P009": { + "source_file": "DESCRIPTION", + "description": "P009 detected: DESCRIPTION codeRepository points to homepage instead of repository: https://github.com/aravind-j/rpcss\n https://cran.r-project.org/package=rpcss\n https://aravind-j.github.io/rpcss/\n https://doi.org/10.5281/zenodo.14889174" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json, DESCRIPTION and CITATION.cff version '0.1.1' does not match DESCRIPTION version '0.1.1.9000', metadata files version '0.1.1.9000'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: dplyr, FactoMineR, ggplot2, ggrepel, gslnls, mathjaxr, methods, Rdpack, stats, tidyr, utils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "atsyplenkov/rp5pik": { + "url": "https://github.com/atsyplenkov/rp5pik", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.0.2' does not match release version '0.0.2.2'" + }, + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.0.2' does not match DESCRIPTION version '0.0.2.2'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: cli, dplyr, lifecycle, lubridate, purrr, rvest, stringr, terra, tibble, tidyr" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://lifecycle.r-lib.org/articles/stages.html#experimental" + } + } + }, + "bihealth/vcfpy": { + "url": "https://github.com/bihealth/vcfpy", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.7.0' and pyproject.toml version '0.14.2' does not match release version '0.14.1'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and pyproject.toml version 'v0.7.0' does not match pyproject.toml version '0.14.2'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: hatchling" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2016-09-28T00:00:00' is outdated compared to repository date '2026-04-25T08:19:41'" + } + } + }, + "biogo/biogo": { + "url": "https://github.com/biogo/biogo", + "pitfalls": { + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'BSD-3 like'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2017-01-05T00:00:00' is outdated compared to repository date '2026-06-12T09:49:10'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "boydorr/TraitExtraction.jl": { + "url": "https://github.com/boydorr/TraitExtraction.jl", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and Project.toml version 'v0.1.0' does not match Project.toml version '0.1.0'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: julia" + } + } + }, + "caltechlibrary/irdm_harvester": { + "url": "https://github.com/caltechlibrary/irdm_harvester", + "pitfalls": { + "P008": { + "source_file": "requirements.txt", + "description": "P008 detected: requirements.txt Software requirements contain invalid URLs: https://github.com/caltechlibrary/dimcli@cris-auth" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: dimcli @ git+https://github.com/caltechlibrary/dimcli@cris-auth" + } + } + }, + "cetoolbox/cetoolbox": { + "url": "https://github.com/cetoolbox/cetoolbox", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.6.0' does not match release version '1.6.1'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Java" + } + } + }, + "daliwang/kmELM": { + "url": "https://github.com/daliwang/kmELM", + "pitfalls": {}, + "warnings": {} + }, + "destination-earth/DestinE_ESA_GFTS": { + "url": "https://github.com/destination-earth/DestinE_ESA_GFTS", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: https://github.com/destination-earth/DestinE_ESA_GFTS/blob/main/.binder/environment.yml, chartpress, click, conda-lock" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: Programming languages in metadata do not have version specifications" + } + } + }, + "donomii/quon-jupyter": { + "url": "https://github.com/donomii/quon-jupyter", + "pitfalls": { + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'GPL v3.0'" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/donomii/quon-jupyter, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/gopherdata/gophernotes" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2017-12-13T00:00:00' is outdated compared to repository date '2020-12-22T00:42:25'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "dutta-alankar/AstroPlasma": { + "url": "https://github.com/dutta-alankar/AstroPlasma", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: hatchling" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: C++" + } + } + }, + "elipousson/bingmapr": { + "url": "https://github.com/elipousson/bingmapr", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: httr2, magick, sf, utils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "elipousson/sharepointr": { + "url": "https://github.com/elipousson/sharepointr", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.1.0' does not match DESCRIPTION version '0.1.0.9000'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: AzureGraph, cli, glue, httr, httr2, lifecycle, Microsoft365R, rlang, stringr, utils, vctrs" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://lifecycle.r-lib.org/articles/stages.html#experimental" + } + } + }, + "epfllibrary/costcalc": { + "url": "https://github.com/epfllibrary/costcalc", + "pitfalls": { + "P001": { + "source_file": "package.json", + "description": "P001 detected: package.json version '1.0.0' does not match release version '2.4'" + }, + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: CODEMETA.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.1469035'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and package.json version '2.4' does not match package.json version '1.0.0'" + } + }, + "warnings": {} + }, + "explore-platform/s-disco": { + "url": "https://github.com/explore-platform/s-disco", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: Visualiser" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2023-07-01T00:00:00' is outdated compared to repository date '2024-05-21T13:59:28'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python, Java" + } + } + }, + "fairdataihub/SODA-for-SPARC": { + "url": "https://github.com/fairdataihub/SODA-for-SPARC", + "pitfalls": {}, + "warnings": {} + }, + "fchuffar/gse2study": { + "url": "https://github.com/fchuffar/gse2study", + "pitfalls": { + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/fchuffar/gse2study, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/fchuffar/ptlmapper" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "fospald/heamd": { + "url": "https://github.com/fospald/heamd", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'GPL'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2018-10-02T00:00:00' is outdated compared to repository date '2025-04-21T09:24:58'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "gabrielblain/SPIChanges": { + "url": "https://github.com/gabrielblain/SPIChanges", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: gamlss, gamlss.dist, lubridate, MuMIn, rlang, spsUtil, stats, brglm2, zoo" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "heuermh/sea-eagle": { + "url": "https://github.com/heuermh/sea-eagle", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.10', codemeta.json version '0.10' and pom.xml version '1.0-SNAPSHOT' does not match release version 'sea-eagle-0.10'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and pom.xml version '0.10' does not match pom.xml version '1.0-SNAPSHOT'" + } + }, + "warnings": { + "W001": { + "source_file": "pom.xml", + "description": "W001 detected: pom.xml contains software requirements without versions: tamboui-toolkit, tamboui-jline3-backend, picocli, dsh-compress, duckdb_jdbc, slf4j-api, slf4j-simple, athena, guava" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2026-06-26T00:00:00' is outdated compared to repository date '2026-06-30T01:43:38'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Java" + } + } + }, + "hykelvinlee42/RRLeo-Photometry": { + "url": "https://github.com/hykelvinlee42/RRLeo-Photometry", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.8190781'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python" + } + } + }, + "interTwin-eu/dcnios": { + "url": "https://github.com/interTwin-eu/dcnios", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.0.0' and package.json version '0.0.0' does not match release version '0.0.1'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and package.json version '1.0.0' does not match package.json version '0.0.0'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-02-01T00:00:00' is outdated compared to repository date '2025-12-11T14:27:54'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "janelia-kicad/trinamic-wiring": { + "url": "https://github.com/janelia-kicad/trinamic-wiring", + "pitfalls": {}, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-07-31T00:00:00' is outdated compared to repository date '2025-05-14T07:09:57'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: KiCad" + } + } + }, + "jimbrig/RPkg": { + "url": "https://github.com/jimbrig/RPkg", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: DBI, fs, glue, jsonlite, lubridate, plumber, pool, safer, sessioninfo, stringr, tibble, urltools, utils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "justinbois/bebi103": { + "url": "https://github.com/justinbois/bebi103", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.1.28' does not match release version '0.1.26'" + }, + "P013": { + "source_file": "setup.py", + "description": "P013 detected: setup.py License does not specify version: 'BSD'" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: contourpy, numpy, numba, xarray, scipy, pandas, polars, tqdm, matplotlib, colorcet, holoviews" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python" + } + } + }, + "karthik/wesanderson": { + "url": "https://github.com/karthik/wesanderson", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "leonawicz/rtrek": { + "url": "https://github.com/leonawicz/rtrek", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: downloader, dplyr, ggplot2, jpeg, jsonlite, memoise, png, purrr, rvest, tibble, tidyr, xml2" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "lifewatch/eva": { + "url": "https://github.com/lifewatch/eva", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.0.1' does not match release version '0.1.0'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python, R" + } + } + }, + "lionandjelka/QhX1": { + "url": "https://github.com/lionandjelka/QhX1", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: numpy, pandas, scipy, scikit-learn, scikit-optimize, libwwz, colorednoise, tqdm, panel, hvplot, bokeh, datashader, pyarrow, dask[dataframe], traitlets, wheel" + } + } + }, + "meng630/GMD_E3SM_SCM": { + "url": "https://github.com/meng630/GMD_E3SM_SCM", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: sphinx, sphinx_rtd_theme, nbsphinx, sphinx-reload" + } + } + }, + "meng630/e3sm_maint-2.0": { + "url": "https://github.com/meng630/e3sm_maint-2.0", + "pitfalls": {}, + "warnings": {} + }, + "mikemahoney218/mvdf": { + "url": "https://github.com/mikemahoney218/mvdf", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: methods, rlang, glue, proceduralnames" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "mlr-org/mcboost": { + "url": "https://github.com/mlr-org/mcboost", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: DESCRIPTION version '0.4.4.9000' and codemeta.json version '0.4.0' does not match release version '0.4.3'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.4.0' does not match DESCRIPTION version '0.4.4.9000'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: backports, rmarkdown, rpart, glmnet" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'mcboost'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://lifecycle.r-lib.org/articles/stages.html#experimental" + } + } + }, + "ms609/Quartet": { + "url": "https://github.com/ms609/Quartet", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: ape, PlotTools" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'Quartet'" + } + } + }, + "mscroggs/pyfax": { + "url": "https://github.com/mscroggs/pyfax", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: requests, feedparser, sphinx-autoapi" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-02-06T00:00:00' is outdated compared to repository date '2025-02-13T11:09:23'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "nkrofta/Topological-Groups": { + "url": "https://github.com/nkrofta/Topological-Groups", + "pitfalls": {}, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Isabelle" + } + } + }, + "rOpenGov/r311": { + "url": "https://github.com/rOpenGov/r311", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.4.3' does not match release version '0.4.4'" + }, + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.4.3' does not match DESCRIPTION version '0.4.4'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: curl, jsonlite, tools, utils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "riatelab/cartography": { + "url": "https://github.com/riatelab/cartography", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: classInt, curl, graphics, methods, png, raster, Rcpp, sf, sp, stats, utils, grDevices" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'cartography'" + } + } + }, + "riatelab/flows": { + "url": "https://github.com/riatelab/flows", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: igraph, graphics, mapsf, utils, stats" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "ropensci/ReLTER": { + "url": "https://github.com/ropensci/ReLTER", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: dplyr, dtplyr, ggforce, ggspatial, geojsonsf, ggplot2, httr2, jqr, jsonlite, lifecycle, lubridate, magrittr, purrr, qrcode, utils, units, tibble, stringr, terra" + }, + "W003": { + "source_file": "metadata files", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/ropensci/ReLTER/main/LICENSE.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "ropensci/sofa": { + "url": "https://github.com/ropensci/sofa", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.4.0' does not match release version '0.4.1'" + }, + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.4.0' does not match DESCRIPTION version '0.4.1'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: mime" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: http://www.repostatus.org/#active" + } + } + }, + "rreinecke/global-gradient-based-groundwater-model": { + "url": "https://github.com/rreinecke/global-gradient-based-groundwater-model", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.0.0' does not match release version '1.1'" + }, + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P009": { + "source_file": "codemeta.json", + "description": "P009 detected: codemeta.json codeRepository points to homepage instead of repository: http://globalgroundwatermodel.org/" + }, + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'GPL v3.0'" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/rreinecke/global-gradient-based-groundwater-model, and the ones found in codemeta.json are mismatched: codemeta.json: http://globalgroundwatermodel.org/" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2018-01-02T00:00:00' is outdated compared to repository date '2026-03-11T10:32:43'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + } + }, + "rsdoiel/gameset": { + "url": "https://github.com/rsdoiel/gameset", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Go" + } + } + }, + "slugb0t/FlaskBlog": { + "url": "https://github.com/slugb0t/FlaskBlog", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.1.2' and codemeta.json version '0.1.2' does not match release version '111.973987.123'" + }, + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.13942931'" + } + }, + "warnings": {} + }, + "usa-npn/rnpn": { + "url": "https://github.com/usa-npn/rnpn", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.4.0', codemeta.json version '1.4.0' and DESCRIPTION version '1.4.1.9000' does not match release version '1.4.1'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '1.4.0' does not match DESCRIPTION version '1.4.1.9000'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: dplyr, jsonlite, lifecycle, magrittr, readr, rlang, tibble, tidyr, xml2" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "vrineau/Agatta": { + "url": "https://github.com/vrineau/Agatta", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.8.1' does not match release version '1.0.2'" + }, + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: https://github.com/vrineau/Agatta/blob/main/requirements.txt" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-03-08T00:00:00' is outdated compared to repository date '2026-02-27T10:33:21'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: Programming languages in metadata do not have version specifications" + } + } + }, + "willgryan/PAVER": { + "url": "https://github.com/willgryan/PAVER", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: DESCRIPTION version '0.0.0.9000' and codemeta.json version '0.0.0.9000' does not match release version 'pre-release'" + }, + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/willgryan/PAVER, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/AliSajid/PAVER" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: circlize, ComplexHeatmap, dplyr, dynamicTreeCut, forcats, ggplot2, ggplotify, ggprism, ggpubr, ggrepel, grid, magrittr, purrr, randomcoloR, rlang, smacof, stringr, tibble, tidyr, umap" + }, + "W003": { + "source_file": "metadata files", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/willgryan/PAVER/main/LICENSE.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + } + }, + "ybarborini/jdev-t5A02": { + "url": "https://github.com/ybarborini/jdev-t5A02", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and bower.json version '1.0.0' does not match bower.json version '0.0.1'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-10-10T00:00:00' is outdated compared to repository date '2024-11-22T13:47:13'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: PHP, JS" + } + } + }, + "ypwong22/ELM_SPRUCE": { + "url": "https://github.com/ypwong22/ELM_SPRUCE", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: numpy, xarray, zarr, netCDF4, cftime" + } + } + }, + "zbmed-semtec/doc2vec-doc-relevance": { + "url": "https://github.com/zbmed-semtec/doc2vec-doc-relevance", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P018": { + "source_file": "codemeta.json", + "description": "P018 detected: codemeta.json Identifier uses raw SWHID without resolvable URL: 'swh:1:dir:5939540bdda33571b0969e520360b80d98b2bf2b'" + } + }, + "warnings": {} + } +} \ No newline at end of file diff --git a/docs/ground_truth/summary_pitfalls_warnings.json b/docs/ground_truth/summary_pitfalls_warnings.json index be9f631..0413aa5 100644 --- a/docs/ground_truth/summary_pitfalls_warnings.json +++ b/docs/ground_truth/summary_pitfalls_warnings.json @@ -1,120 +1,106 @@ { "repo_1": { - "url": "https://github.com/ComputationalGenomics/Reveal", + "url": "https://github.com/AI5GW/Goertzel", "pitfalls": { "P002": { "source_file": "LICENSE", "description": "Copyright section taken as template without modification" } }, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - } - }, - "commit ID": "245b109d77370eec2eb7c4dce0370638887aa7c6" + "commit ID": "2eb355240d0a66147309c783c91877af350414a9" }, "repo_2": { - "url": "https://github.com/damiendevienne/phylter", + "url": "https://github.com/BM32ESRF/LaueNN", + "pitfalls": {}, "warnings": { - "W009": { + "W001": { + "source_file": "requirements.txt", + "description": "SoftwareRequirements don’t have versions" + }, + "W002": { "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" } }, - "commit ID": "4d74241169be3882da9d5f08da47bd40604764eb" + "commit ID": "9033ffbf5c5257b0e22289bf6fb175dc678e1c84" }, "repo_3": { - "url": "https://github.com/gavinsimpson/data.adapt.multi.test", + "url": "https://github.com/ComputationalBiomechanicsLab/opensim-creator", "pitfalls": { - "P016": { - "source_file": "codemeta.json", - "description": "codeRepository does not point to the same repository" - }, "P017": { "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" + "description": "version does not match the package’s" } }, "warnings": { - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W007": { - "source_file": "codemeta.json", - "description": "Identifier is empty" + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" } }, - "commit ID": "b33e222ddb9e05da62afb0bbfd88bd8a3567ac89" + "commit ID": "824222911d158f0ffc6929605f8a925ff08fcf64" }, "repo_4": { - "url": "https://github.com/FairRootGroup/FairMQ", + "url": "https://github.com/ComputationalGenomics/Reveal", "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "Version does not correspond to the version used in the latest release" - }, - "P006": { - "source_file": "codemeta.json", - "description": "License pointing to a local file instead of stating the name. For example: \u201clicense\u201d: LICENSE.MD" + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" } }, - "warnings": {}, - "commit ID": "fa64faf3f755e9b00e0af738826718bf5117c8ea" - }, - "repo_5": { - "url": "https://github.com/neuronsimulator/nrn", - "pitfalls": {}, "warnings": { "W001": { - "source_file": "pyproject.toml", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" } }, - "commit ID": "aba5057b527587f1ca9a43b772edf47346d41e5a" + "commit ID": "245b109d77370eec2eb7c4dce0370638887aa7c6" }, - "repo_6": { - "url": "https://github.com/gabrielblain/CropWaterBalance", + "repo_5": { + "url": "https://github.com/DrMattG/SDGsR", "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "Version does not correspond to the version used in the latest release" + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" + "P009": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "coderepository points to their homepage" } }, + "commit ID": "fa1898e88b9a31a05c2b722f36d6993595536a12" + }, + "repo_6": { + "url": "https://github.com/EDIorg/ecocomDP", + "pitfalls": {}, "warnings": { "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" } }, - "commit ID": "6b6a27d027b3508b62aff062cb8fd66f3942951e" + "commit ID": "531bbefc6a584cfde708c8112ac08b9c63b810bc" }, "repo_7": { - "url": "https://github.com/instatdealii/idealii", + "url": "https://github.com/FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization", "pitfalls": { - "P008": { + "P011": { "source_file": "codemeta.json", - "description": "softwareRequirement points to an invalid page" + "description": "IssueTracker violates the expected URL format" + }, + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" } }, "warnings": { "W001": { - "source_file": "codemeta.json", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" }, "W002": { "source_file": "codemeta.json", @@ -125,61 +111,80 @@ "description": "programmingLanguages do not have versions" } }, - "commit ID": "8f6d66b22dfcf276cce0eb275f46fdb2f6c5d59e" + "commit ID": "19cc44fd5204dcc32fdff9e1a2213e5aa74db5b2" }, "repo_8": { - "url": "https://github.com/sillyplots/spotifyr", + "url": "https://github.com/FairRootGroup/DDS", "pitfalls": { - "P010": { - "source_file": "LICENSE", - "description": "The file does not have any specific license except for copyright" + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" } }, - "warnings": { - "W006": { + "warnings": {}, + "commit ID": "39e33651d1fe319411d7c50ff44b5ede31d75f9d" + }, + "repo_9": { + "url": "https://github.com/FairRootGroup/FairMQ", + "pitfalls": { + "P001": { "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + "description": "Version does not correspond to the version used in the latest release" + }, + "P006": { + "source_file": "codemeta.json", + "description": "License pointing to a local file instead of stating the name. For example: “license”: LICENSE.MD" } }, - "commit ID": "68bc0ae54ee5f727b9ff6b70483f9b4b1fddaf3e" + "warnings": {}, + "commit ID": "fa64faf3f755e9b00e0af738826718bf5117c8ea" }, - "repo_9": { - "url": "https://github.com/Materials-Data-Science-and-Informatics/dirschema", - "pitfalls": {}, + "repo_10": { + "url": "https://github.com/HumanBrainProject/kg-core-sdks", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package’s" + } + }, "warnings": { "W001": { - "source_file": "pyproject.toml", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" }, - "W009": { + "W002": { "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" } }, - "commit ID": "297c914fa277e2c720ae08a758707ef8ebe51ef6" + "commit ID": "83b3091785a7e007408e463122cd64cd40049bad" }, "repo_11": { - "url": "https://github.com/gemini3d/gemini3d", + "url": "https://github.com/IBM/multi-variate-parallel-transformer", "pitfalls": { - "P014": { - "source_file": "codemeta.json", - "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" } }, "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "W001": { + "source_file": "requirements.txt", + "description": "SoftwareRequirements don’t have versions" } }, - "commit ID": "ee89832c620c05101751759f3fbaf1ba9e7d7b74" + "commit ID": "9f5357bb55d53c66e9cfc63ef39fddb05c1c1ad7" }, "repo_12": { - "url": "https://github.com/Sprinterzzj/ggstatsplot", + "url": "https://github.com/JSadowska/testLille", "pitfalls": { - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" }, "P016": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", @@ -187,60 +192,68 @@ } }, "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - }, - "W009": { + "W004": { "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" + "description": "programmingLanguages do not have versions" } }, - "commit ID": "150a4bd2bb66bd1bdbe19eadec3bb6a6f00c66b7" + "commit ID": "a944981f43c1bd37710b8a41442754bdc95e339b" }, "repo_13": { - "url": "https://github.com/bioconductor-source/treeio", + "url": "https://github.com/Kaffeegangster/tclf", "pitfalls": { - "P017": { - "source_file": "codemeta.json & DESCRIPTION", - "description": "version does not match the package\u2019s" + "P006": { + "source_file": "pyproject.toml", + "description": "License pointing to a local file instead of stating the name. For example: “license”: LICENSE.MD" } }, "warnings": { "W001": { - "source_file": "DESCRIPTION", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "pyproject.toml", + "description": "SoftwareRequirements don’t have versions" } }, - "commit ID": "df013a97e144086980317527de6fab39dc54e9fa" + "commit ID": "d44b74f990c3e2d03d9a3ced3a89ffa619b59d63" }, "repo_14": { - "url": "https://github.com/Kaffeegangster/tclf", + "url": "https://github.com/KonradHoeffner/rickview", "pitfalls": { - "P006": { - "source_file": "pyproject.toml", - "description": "License pointing to a local file instead of stating the name. For example: \u201clicense\u201d: LICENSE.MD" + "P014": { + "source_file": "codemeta.json", + "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" } }, "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "SoftwareRequirements don\u2019t have versions" + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" } }, - "commit ID": "d44b74f990c3e2d03d9a3ced3a89ffa619b59d63" + "commit ID": "934e834915544005e0a0106d45d222d4e745f129" }, "repo_15": { - "url": "https://github.com/BM32ESRF/LaueNN", + "url": "https://github.com/LDEO-CREW/Pythonic-DISORT", "pitfalls": {}, "warnings": { "W001": { - "source_file": "requirements.txt", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" + } + }, + "commit ID": "eb92fb81d422e76c1501d196bf14db6756430d03" + }, + "repo_16": { + "url": "https://github.com/LanguageMachines/frog", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" }, "W002": { "source_file": "codemeta.json", @@ -249,19 +262,13 @@ "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" + }, + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" } }, - "commit ID": "9033ffbf5c5257b0e22289bf6fb175dc678e1c84" - }, - "repo_16": { - "url": "https://github.com/Ruitao-Terry/GA-cal", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "commit ID": "62f5b3a8bcd3ae2e3c3e639bd6ad856d2b001d04" + "commit ID": "53da3bfd9958af5e7221348607f6db358edef486" }, "repo_17": { "url": "https://github.com/LanguageMachines/ucto", @@ -269,7 +276,7 @@ "warnings": { "W001": { "source_file": "codemeta.json", - "description": "SoftwareRequirements don\u2019t have versions" + "description": "SoftwareRequirements don’t have versions" }, "W002": { "source_file": "codemeta.json", @@ -287,100 +294,117 @@ "commit ID": "a57692225c4693a4229f7cd74f39465aaa96b4a7" }, "repo_18": { - "url": "https://github.com/eebrown/workloopR", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - }, - "P016": { + "url": "https://github.com/Mariizero/ECGRat", + "pitfalls": {}, + "warnings": { + "W004": { "source_file": "codemeta.json", - "description": "codeRepository does not point to the same repository" + "description": "programmingLanguages do not have versions" } }, - "warnings": { - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" - } - }, - "commit ID": "51ca63341023a996fecaa6057109aa8c16029b51" + "commit ID": "eaeb1758e791926d267c69807ad5b3dab75c98a9" }, "repo_19": { - "url": "https://gricad-gitlab.univ-grenoble-alpes.fr/bidegarb/nautil/", - "pitfalls": {}, + "url": "https://github.com/Miagarciaru/atlas-outreach-data-tools-for-lumi36", + "pitfalls": { + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + } + }, "warnings": { "W001": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "description": "SoftwareRequirements don’t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" }, "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" } }, - "commit ID": "5d60f004a965a016cf40cca42cc696e33296969a" + "commit ID": "fc28e29316a373b917db9e88c778fb52697476cc" }, "repo_20": { - "url": "https://github.com/lecfab/rescience-gorder", - "pitfalls": {}, + "url": "https://github.com/MiguelRodo/Slides24STA5069Z", + "pitfalls": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package’s" + } + }, "warnings": { "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" } }, - "commit ID": "305d28dc1584b152ff981ee81be0de12598b402e" + "commit ID": "44fa1574b3dd34eee6eda27fb8428e44c4a9dd51" }, "repo_21": { - "url": "https://github.com/arthurcuri/flixfinder-tis1", - "pitfalls": {}, - "commit ID": "8771f700fd168e2e6c16a4f85b6631ca6b9c569f" - }, - "repo_22": { - "url": "https://github.com/ComputationalBiomechanicsLab/opensim-creator", + "url": "https://github.com/MolSSI/QCEngine", "pitfalls": { - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" } }, "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" } }, - "commit ID": "824222911d158f0ffc6929605f8a925ff08fcf64" + "commit ID": "cdda3660afee241968907c3020ee368ef8230b99" }, - "repo_23": { - "url": "https://github.com/nazar-mykolyshyn/TikTok-Api", - "pitfalls": {}, + "repo_22": { + "url": "https://github.com/Neplex/ArchiTXT", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + } + }, "warnings": { "W001": { - "source_file": "requirements.txt", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "pyproject.toml", + "description": "SoftwareRequirements don’t have versions" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + }, + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + }, + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" } }, - "commit ID": "3973da62a683b34548d07acb48e334ac5b4cfe6d" + "commit ID": "e82e532453dff78fe5ea2475774be167521c0fca" }, - "repo_25": { - "url": "https://github.com/peterpolidoro/kicad_netlist_reader", + "repo_23": { + "url": "https://github.com/Neplex/COveR", "pitfalls": { "P002": { "source_file": "LICENSE", "description": "Copyright section taken as template without modification" + }, + "P013": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "License does not have the specific version" } }, "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "SoftwareRequirement don\u2019t have versions" - }, "W002": { "source_file": "codemeta.json", "description": "dateModified is outdated" @@ -390,76 +414,77 @@ "description": "programmingLanguages do not have versions" } }, - "commit ID": "1b2108e0a8da04acdb595c724f3272a73f1ab755" + "commit ID": "35423ec7f840c68070b73a9910350c1ac93e4a53" }, - "repo_26": { - "url": "https://github.com/ropensci/geojson", + "repo_24": { + "url": "https://github.com/NeuralEnsemble/PyNN", "pitfalls": { "P001": { - "source_file": "DESCRIPTION", + "source_file": "codemeta", "description": "Version does not correspond to the version used in the latest release" - }, - "P010": { - "source_file": "LICENSE", - "description": "The file does not have any specific license except for copyright" - }, - "P017": { - "source_file": "codemeta.json, DESCRIPTION", - "description": "version does not match the package\u2019s" } }, "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "pyproject.toml ", + "description": "SoftwareRequirements don’t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" }, "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" } }, - "commit ID": "3881c7df07e924b3afce2270b78e316e5e47e79d" + "commit ID": "5a53a5144e5c8c739a0ad65435cea23579574a19" }, - "repo_27": { - "url": "https://github.com/Neplex/ArchiTXT", + "repo_25": { + "url": "https://github.com/PRIDE-Archive/pridepy", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "SoftwareRequirements don’t have versions" + } + }, + "commit ID": "b046bd00569ae3930b51581d559cc5c5afde866a" + }, + "repo_26": { + "url": "https://github.com/ParaStation/psmpi", "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package’s" } }, "warnings": { "W001": { - "source_file": "pyproject.toml", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" }, - "W006": { + "W002": { "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + "description": "dateModified is outdated" }, - "W009": { + "W004": { "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" + "description": "programmingLanguages do not have versions" } }, - "commit ID": "e82e532453dff78fe5ea2475774be167521c0fca" + "commit ID": "375f8ee387a70bb5e80b774c0ec8472f2ca7d840" }, - "repo_28": { - "url": "https://github.com/NeuralEnsemble/PyNN", - "pitfalls": { - "P001": { - "source_file": "codemeta", - "description": "Version does not correspond to the version used in the latest release" - } - }, + "repo_27": { + "url": "https://github.com/R3BRootGroup/sofia", "warnings": { "W001": { - "source_file": "pyproject.toml ", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" }, "W002": { "source_file": "codemeta.json", @@ -468,11 +493,15 @@ "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" + }, + "W005": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "softwareRequirements have more than one req, but it’s written as one string" } }, - "commit ID": "5a53a5144e5c8c739a0ad65435cea23579574a19" + "commit ID": "ce7e8f0296333ca952d5f5554c068cc44a500380" }, - "repo_29": { + "repo_28": { "url": "https://github.com/Rbfinch/grepq", "pitfalls": { "P001": { @@ -481,7 +510,7 @@ }, "P017": { "source_file": "codemeta.json, Cargo.toml", - "description": "version does not match the package\u2019s" + "description": "version does not match the package’s" } }, "warnings": { @@ -492,71 +521,80 @@ }, "commit ID": "3251219d23b1242a562a593f4e9f2f98ce797fad" }, - "repo_30": { - "url": "https://github.com/ms609/TreeSearch", - "pitfalls": { - "P001": { - "source_file": "codemeta.json", - "description": "Version does not correspond to the version used in the latest release" - }, - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" + "repo_29": { + "url": "https://github.com/SeUniVr/PLC-RE", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" } }, + "commit ID": "a12a44cbc077dbd4c20b5f4764f9d53da5647b86" + }, + "repo_30": { + "url": "https://github.com/SedFoam/sedfoam", + "pitfalls": {}, "warnings": { - "W004": { + "W001": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "SoftwareRequirements don’t have versions" }, - "W006": { + "W002": { "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" } }, - "commit ID": "d4af0fba212c8490e2c0250d3872f4b9e0d630c2" + "commit ID": "08a5552af912fa8c89a265329484618ae7919be9" }, "repo_31": { - "url": "https://github.com/inbo/archivaltag", - "pitfalls": { - "P003": { + "url": "https://github.com/Simple-Robotics/proxsuite", + "pitfalls": {}, + "warnings": { + "W001": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "There are more than two authors but only one field for them (\"author\": \"Thomas Boch and Matthieu Baumann\") instead of a list" - }, - "P015": { + "description": "SoftwareRequirements don’t have versions" + } + }, + "commit ID": "00a6eff9dcb21f31b8990d232d46fba5d6b18cbf" + }, + "repo_32": { + "url": "https://github.com/amd/mumps-build", + "pitfalls": { + "P014": { "source_file": "codemeta.json", - "description": "contIntegration link returns 404" + "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" + }, + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" } }, "warnings": { "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" } }, - "commit ID": "ad337685076bb7eae906bee4dae6067812564284" + "commit ID": "a9af8ebc5a24c075f62464daf03b30ce6ab1945b" }, - "repo_32": { - "url": "https://github.com/ms609/Quartet", + "repo_33": { + "url": "https://github.com/andrew-saydjari/mfouesneau.github.com", "pitfalls": {}, "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" } }, - "commit ID": "8b81f549be20f251f71f2be402c5ff6d90dada3f" + "commit ID": "17fbd909db0122eeca39d0c313b11742e7fd8164" }, - "repo_33": { - "url": "https://github.com/tvwenger/bayes_spec", + "repo_34": { + "url": "https://github.com/assume-framework/assume", "pitfalls": { "P001": { "source_file": "codemeta.json", @@ -565,184 +603,132 @@ }, "warnings": { "W001": { - "source_file": "requirements.txt", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "pyproject.toml", + "description": "SoftwareRequirements don’t have versions" }, "W002": { "source_file": "codemeta.json", "description": "dateModified is outdated" - }, - "W007": { - "source_file": "codemeta.json", - "description": "Identifier is empty" } }, - "commit ID": "2dc53e3fc9302b8a40fcaec6384ee152c700590a" - }, - "repo_34": { - "url": "https://github.com/caseyyoungflesh/MCMCvis", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - } - }, - "commit ID": "3c7b05282dbe3b509f2a101e0ac5fd397c283cfa" + "commit ID": "aaa904c603ef267aaab6872d67cd87affcb17688" }, "repo_35": { - "url": "https://github.com/sep-developers/sep", + "url": "https://github.com/barbagroup/PetIBM", "pitfalls": { "P001": { - "source_file": "codemeta.json", + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", "description": "Version does not correspond to the version used in the latest release" } }, "warnings": { - "W001": { - "source_file": "pyproject.toml", - "description": "SoftwareRequirements don\u2019t have versions" - }, "W002": { "source_file": "codemeta.json", "description": "dateModified is outdated" + }, + "W007": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Identifier is empty" } }, - "commit ID": "93b3ac52e0f6cb26449204dc8bc8c3cf65602f0f" + "commit ID": "be91f218702ada7fe569fe77c258fa748f075713" }, "repo_36": { - "url": "https://github.com/ropensci/tradestatistics", + "url": "https://github.com/bioconductor-source/treeio", "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P009": { - "source_file": "codemeta.json", - "description": "coderepository points to their homepage" - }, "P017": { - "source_file": "codemeta.json, DESCRIPTION", - "description": "version does not match the package\u2019s" + "source_file": "codemeta.json & DESCRIPTION", + "description": "version does not match the package’s" } }, "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "W001": { + "source_file": "DESCRIPTION", + "description": "SoftwareRequirements don’t have versions" } }, - "commit ID": "4c0b85989f0085f4eb4c16eaefab6214b7854b6b" + "commit ID": "df013a97e144086980317527de6fab39dc54e9fa" }, "repo_37": { - "url": "https://github.com/bioc/BioCor", - "pitfalls": { - "P010": { - "source_file": "LICENSE", - "description": "The file does not have any specific license except for copyright" - }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, + "url": "https://github.com/caltechlibrary/admin-shell-scripts", + "pitfalls": {}, "warnings": { "W001": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "description": "SoftwareRequirements don’t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" }, "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" } }, - "commit ID": "e26910ce2bb0f6e1b4edcde1b0fa925d78c837a0" + "commit ID": "ba5753c86812f4230e2c68dcecaf825c22aeefd4" }, "repo_38": { - "url": "https://github.com/ropensci-archive/tidytags", + "url": "https://github.com/caseyyoungflesh/MCMCvis", "pitfalls": { - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" } }, "warnings": { "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" + }, + "W006": { + "source_file": "codemeta.json", + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" } }, - "commit ID": "65c40bcb0e6721b55be676c42b524e33ea59885e" + "commit ID": "3c7b05282dbe3b509f2a101e0ac5fd397c283cfa" }, "repo_39": { - "url": "https://github.com/giscience-fsu/sperrorest", - "pitfalls": { - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - } - }, + "url": "https://github.com/cristal-smac/ipd", + "pitfalls": {}, "warnings": { - "W004": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" + }, + "W002": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "dateModified is outdated" }, - "W009": { + "W004": { "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" + "description": "programmingLanguages do not have versions" } }, - "commit ID": "b4d2a1426bfcbb2f5630c6182ff946b926f96e4a" + "commit ID": "40c86c7f7ad51599ed402ab03bbfad398d4cce61" }, "repo_40": { - "url": "https://github.com/IBM/multi-variate-parallel-transformer", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, + "url": "https://github.com/damiendevienne/phylter", "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "SoftwareRequirements don\u2019t have versions" + "W009": { + "source_file": "codemeta.json", + "description": "developmentStatus is a URL instead of a string" } }, - "commit ID": "9f5357bb55d53c66e9cfc63ef39fddb05c1c1ad7" + "commit ID": "4d74241169be3882da9d5f08da47bd40604764eb" }, "repo_41": { - "url": "https://github.com/mia-jinns/jinns", + "url": "https://github.com/electronicvisions/releases-ebrains", "pitfalls": { - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" + "P014": { + "source_file": "codemeta.json", + "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" } }, "warnings": { "W001": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "description": "SoftwareRequirements don’t have versions" }, "W002": { "source_file": "codemeta.json", @@ -751,66 +737,88 @@ "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" + }, + "W005": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "softwareRequirements have more than one req, but it’s written as one string" } }, - "commit ID": "dbd98a4fe05f04b8f96d1bf23ea977a3938c8d66" + "commit ID": "fcd2149561ab1796fba4d2500facdd3e532a6b86" }, "repo_42": { - "url": "https://github.com/PRIDE-Archive/pridepy", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "requirements.txt", - "description": "SoftwareRequirements don\u2019t have versions" + "url": "https://github.com/felixsc1/COSplay", + "pitfalls": { + "P013": { + "source_file": "codemeta.json", + "description": "License does not have the specific version" } }, - "commit ID": "b046bd00569ae3930b51581d559cc5c5afde866a" - }, - "repo_44": { - "url": "https://github.com/SedFoam/sedfoam", - "pitfalls": {}, "warnings": { - "W001": { - "source_file": "codemeta.json", - "description": "SoftwareRequirements don\u2019t have versions" - }, "W002": { "source_file": "codemeta.json", "description": "dateModified is outdated" }, - "W004": { + "W007": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "Identifier is empty" } }, - "commit ID": "08a5552af912fa8c89a265329484618ae7919be9" + "commit ID": "9a10c3f55b1f80c916d55acb3110402cdfda6fa5" }, - "repo_45": { - "url": "https://github.com/assume-framework/assume", + "repo_43": { + "url": "https://github.com/fhdsl/conrad", "pitfalls": { "P001": { - "source_file": "codemeta.json", + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", "description": "Version does not correspond to the version used in the latest release" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package’s" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" + } + }, + "commit ID": "f7bda1bcc042e61b96ff84c860f3bb0ff5d690b1" + }, + "repo_44": { + "url": "https://github.com/fran2410/AI-Open-Science", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" } }, "warnings": { "W001": { - "source_file": "pyproject.toml", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" }, "W002": { "source_file": "codemeta.json", "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" } }, - "commit ID": "aaa904c603ef267aaab6872d67cd87affcb17688" + "commit ID": "592afb0b0f8a64cb57b66ed4f79d2bca9f448fbc" }, - "repo_46": { - "url": "https://github.com/felixsc1/COSplay", + "repo_45": { + "url": "https://github.com/gavinsimpson/data.adapt.multi.test", "pitfalls": { - "P013": { + "P016": { "source_file": "codemeta.json", - "description": "License does not have the specific version" + "description": "codeRepository does not point to the same repository" + }, + "P017": { + "source_file": "codemeta.json", + "description": "version does not match the package’s" } }, "warnings": { @@ -823,18 +831,14 @@ "description": "Identifier is empty" } }, - "commit ID": "9a10c3f55b1f80c916d55acb3110402cdfda6fa5" + "commit ID": "b33e222ddb9e05da62afb0bbfd88bd8a3567ac89" }, - "repo_47": { - "url": "https://github.com/megasanjay/testrepository", + "repo_46": { + "url": "https://github.com/gemini3d/gemini3d", "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P011": { + "P014": { "source_file": "codemeta.json", - "description": "IssueTracker violates the expected URL format" + "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" } }, "warnings": { @@ -843,14 +847,14 @@ "description": "programmingLanguages do not have versions" } }, - "commit ID": "b589e13fb3a725d82d6d0f9a8c68de51b765e546" + "commit ID": "ee89832c620c05101751759f3fbaf1ba9e7d7b74" }, - "repo_48": { - "url": "https://github.com/GlobalEcologyLab/poems", + "repo_47": { + "url": "https://github.com/grycap/im-client", "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" }, "P015": { "source_file": "codemeta.json", @@ -858,19 +862,19 @@ } }, "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" + }, "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" } }, - "commit ID": "129b021c42b726a9cb3e8b2b0786a1bc9513f4d9" + "commit ID": "2e9f20e0a1326a63998b2c181042f5315515b98d" }, - "repo_49": { - "url": "https://github.com/EDIorg/ecocomDP", + "repo_48": { + "url": "https://github.com/jonas-ellert/linear-time-runs", "pitfalls": {}, "warnings": { "W004": { @@ -878,38 +882,49 @@ "description": "programmingLanguages do not have versions" } }, - "commit ID": "531bbefc6a584cfde708c8112ac08b9c63b810bc" + "commit ID": "065dfae01cccc8fa7fa8b116cfa91f272c0b22ba" }, - "repo_50": { - "url": "https://github.com/fhdsl/conrad", + "repo_49": { + "url": "https://github.com/jvegreg/ESMValCore", "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } + "P009": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "coderepository points to their homepage" + } + }, + "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" + } }, + "commit ID": "03eb1c942bf1dc3be98cb30c3592b42e82a94f16" + }, + "repo_50": { + "url": "https://github.com/lecfab/rescience-gorder", + "pitfalls": {}, "warnings": { "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" } }, - "commit ID": "f7bda1bcc042e61b96ff84c860f3bb0ff5d690b1" + "commit ID": "305d28dc1584b152ff981ee81be0de12598b402e" }, "repo_51": { - "url": "https://github.com/MiguelRodo/Slides24STA5069Z", + "url": "https://github.com/m-team-kit/cookiecutter-web", "pitfalls": { "P001": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", "description": "Version does not correspond to the version used in the latest release" }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" } }, "warnings": { @@ -918,45 +933,48 @@ "description": "programmingLanguages do not have versions" } }, - "commit ID": "44fa1574b3dd34eee6eda27fb8428e44c4a9dd51" + "commit ID": "728cf1ae38ce76aaaa31fd52bb46006144a2e5fa" }, "repo_52": { - "url": "https://github.com/FairRootGroup/DDS", - "pitfalls": { - "P001": { + "url": "https://github.com/matthiasprobst/h5RDMtoolbox", + "pitfalls": {}, + "warnings": { + "W001": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" + "description": "SoftwareRequirements don’t have versions" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" } }, - "warnings": {}, - "commit ID": "39e33651d1fe319411d7c50ff44b5ede31d75f9d" + "commit ID": "eaf66f66d23fcc6b7b1728f2fe7ac6d65c9d9d85" }, "repo_53": { - "url": "https://github.com/amd/mumps-build", - "pitfalls": { - "P014": { - "source_file": "codemeta.json", - "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" - }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - } - }, + "url": "https://github.com/matthiasprobst/pivmetalib", + "pitfalls": {}, "warnings": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" + }, "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" } }, - "commit ID": "a9af8ebc5a24c075f62464daf03b30ce6ab1945b" + "commit ID": "a8d2fafb200cb3663f77c21bf768b94c87a2618c" }, "repo_54": { - "url": "https://github.com/MolSSI/QCEngine", + "url": "https://github.com/megasanjay/testrepository", "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P011": { + "source_file": "codemeta.json", + "description": "IssueTracker violates the expected URL format" } }, "warnings": { @@ -965,29 +983,42 @@ "description": "programmingLanguages do not have versions" } }, - "commit ID": "cdda3660afee241968907c3020ee368ef8230b99" + "commit ID": "b589e13fb3a725d82d6d0f9a8c68de51b765e546" }, "repo_55": { - "url": "https://github.com/Simple-Robotics/proxsuite", - "pitfalls": {}, + "url": "https://github.com/mia-jinns/jinns", + "pitfalls": { + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" + } + }, "warnings": { "W001": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "description": "SoftwareRequirements don’t have versions" + }, + "W002": { + "source_file": "codemeta.json", + "description": "dateModified is outdated" + }, + "W004": { + "source_file": "codemeta.json", + "description": "programmingLanguages do not have versions" } }, - "commit ID": "00a6eff9dcb21f31b8990d232d46fba5d6b18cbf" + "commit ID": "dbd98a4fe05f04b8f96d1bf23ea977a3938c8d66" }, "repo_56": { - "url": "https://github.com/ropensci/occCite", + "url": "https://github.com/ms609/TreeSearch", "pitfalls": { - "P015": { + "P001": { "source_file": "codemeta.json", - "description": "contIntegration link returns 404" + "description": "Version does not correspond to the version used in the latest release" }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" } }, "warnings": { @@ -998,49 +1029,38 @@ "W006": { "source_file": "codemeta.json", "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" } }, - "commit ID": "b1af9efcf9a6b892591297c08bc2f0e1c00b573a" + "commit ID": "d4af0fba212c8490e2c0250d3872f4b9e0d630c2" }, "repo_57": { - "url": "https://github.com/sscu-budapest/lead-contamination-hungary", - "pitfalls": {}, + "url": "https://github.com/naaci/watermarking", "warnings": { "W001": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "description": "SoftwareRequirements don’t have versions" } }, - "commit ID": "17db2298e25bb439873e3746ddab6aad05b9014f" + "commit ID": "48211f102defdb16d0cd3cf6fc281518a4a96442" }, "repo_58": { - "url": "https://github.com/Mariizero/ECGRat", - "pitfalls": { - }, + "url": "https://github.com/nazar-mykolyshyn/TikTok-Api", + "pitfalls": {}, "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "W001": { + "source_file": "requirements.txt", + "description": "SoftwareRequirements don’t have versions" } }, - "commit ID": "eaeb1758e791926d267c69807ad5b3dab75c98a9" + "commit ID": "3973da62a683b34548d07acb48e334ac5b4cfe6d" }, "repo_59": { - "url": "https://github.com/khinsen/MMTK", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - } - }, + "url": "https://github.com/neuronsimulator/nrn", + "pitfalls": {}, "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "pyproject.toml", + "description": "SoftwareRequirements don’t have versions" }, "W002": { "source_file": "codemeta.json", @@ -1051,20 +1071,20 @@ "description": "programmingLanguages do not have versions" } }, - "commit ID": "84547c238580201fe21bf3f227be7c02a1a2b9bc" + "commit ID": "aba5057b527587f1ca9a43b772edf47346d41e5a" }, "repo_60": { - "url": "https://github.com/electronicvisions/releases-ebrains", + "url": "https://github.com/peterpolidoro/kicad_bom", "pitfalls": { - "P014": { - "source_file": "codemeta.json", - "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" } }, "warnings": { "W001": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "description": "SoftwareRequirements don’t have versions" }, "W002": { "source_file": "codemeta.json", @@ -1073,131 +1093,116 @@ "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" - }, - "W005": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "softwareRequirements have more than one req, but it\u2019s written as one string" } }, - "commit ID": "fcd2149561ab1796fba4d2500facdd3e532a6b86" + "commit ID": "9868eeec378a9a3723c963c66a4a5e77023903aa" }, "repo_61": { - "url": "https://github.com/LanguageMachines/foliautils", + "url": "https://github.com/peterpolidoro/kicad_netlist_reader", "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" } }, "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "source_file": "pyproject.toml", + "description": "SoftwareRequirement don’t have versions" }, - "W006": { + "W002": { "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + "description": "dateModified is outdated" }, - "W009": { + "W004": { "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" + "description": "programmingLanguages do not have versions" } }, - "commit ID": "bdcfd01531c0b147bfc2cb08f9e8e351db6100fb" + "commit ID": "1b2108e0a8da04acdb595c724f3272a73f1ab755" }, "repo_62": { - "url": "https://github.com/yt-project/unyt", + "url": "https://github.com/r-spatialecology/landscapemetrics", "pitfalls": { "P001": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", "description": "Version does not correspond to the version used in the latest release" }, - "P013": { + "P009": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "License does not have the specific version" + "description": "coderepository points to their homepage" }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" } }, "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { + "W006": { "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, - "W007": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Identifier is empty" + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" } }, - "commit ID": "969fc6a629d332568832b849c6cb058d405ad442" + "commit ID": "9e777a5c5ec568ebca8f5ddec7bed1c2d465a357" }, "repo_63": { - "url": "https://github.com/cristal-smac/ipd", - "pitfalls": {}, - "warnings": { - "W001": { + "url": "https://github.com/riatelab/tanaka", + "pitfalls": { + "P001": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, + "description": "Version does not correspond to the version used in the latest release" + } + }, + "warnings": { "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" } }, - "commit ID": "40c86c7f7ad51599ed402ab03bbfad398d4cce61" + "commit ID": "fd2efc3d9b417612c81c318f0223a40f5f4e6518" }, "repo_64": { - "url": "https://github.com/grycap/im-client", + "url": "https://github.com/ropensci/geojson", "pitfalls": { - "P002": { + "P001": { + "source_file": "DESCRIPTION", + "description": "Version does not correspond to the version used in the latest release" + }, + "P010": { "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" + "description": "The file does not have any specific license except for copyright" }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" + "P017": { + "source_file": "codemeta.json, DESCRIPTION", + "description": "version does not match the package’s" } }, "warnings": { "W001": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "description": "SoftwareRequirements don’t have versions" }, "W004": { "source_file": "codemeta.json", "description": "programmingLanguages do not have versions" } }, - "commit ID": "2e9f20e0a1326a63998b2c181042f5315515b98d" + "commit ID": "3881c7df07e924b3afce2270b78e316e5e47e79d" }, "repo_65": { - "url": "https://github.com/ashbythorpe/selenider", + "url": "https://github.com/ropensci/tradestatistics", "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" }, - "P015": { + "P009": { "source_file": "codemeta.json", - "description": "contIntegration link returns 404" + "description": "coderepository points to their homepage" }, "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" + "source_file": "codemeta.json, DESCRIPTION", + "description": "version does not match the package’s" } }, "warnings": { @@ -1206,183 +1211,152 @@ "description": "programmingLanguages do not have versions" } }, - "commit ID": "0f802fea4d6429786335a9f31ca53b0e941a80de" + "commit ID": "4c0b85989f0085f4eb4c16eaefab6214b7854b6b" }, "repo_66": { - "url": "https://github.com/HumanBrainProject/kg-core-sdks", + "url": "https://github.com/sep-developers/sep", "pitfalls": { - "P017": { + "P001": { "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" + "description": "Version does not correspond to the version used in the latest release" } }, "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "pyproject.toml", + "description": "SoftwareRequirements don’t have versions" }, "W002": { "source_file": "codemeta.json", "description": "dateModified is outdated" - }, - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" } }, - "commit ID": "83b3091785a7e007408e463122cd64cd40049bad" + "commit ID": "93b3ac52e0f6cb26449204dc8bc8c3cf65602f0f" }, "repo_67": { - "url": "https://github.com/ajpelu/likelihoodTools", + "url": "https://github.com/sillyplots/spotifyr", "pitfalls": { - "P002": { + "P010": { "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P013": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "License does not have the specific version" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" + "description": "The file does not have any specific license except for copyright" } }, "warnings": { - "W004": { + "W006": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" } }, - "commit ID": "e0d8fdb5b69d27a641ffc4731e8c2e5b6a21b67c" + "commit ID": "68bc0ae54ee5f727b9ff6b70483f9b4b1fddaf3e" }, "repo_68": { - "url": "https://github.com/KonradHoeffner/rickview", - "pitfalls": { - "P014": { - "source_file": "codemeta.json", - "description": "uses bare DOIs in the identifier field instead of full https://doi.org/ URL" - } - }, + "url": "https://github.com/sorokinvld/LLFn", + "pitfalls": {}, "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" } }, - "commit ID": "934e834915544005e0a0106d45d222d4e745f129" + "commit ID": "a8ec8da19a3cc5d8207d362add83181bffa18c4e" }, "repo_69": { - "url": "https://github.com/dankelley/oce", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - }, - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P013": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "License does not have the specific version" - }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" - } - }, + "url": "https://github.com/sscu-budapest/lead-contamination-hungary", + "pitfalls": {}, "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" } }, - "commit ID": "40904f6d5b9b1fd3d2d0631da59759283285a93f" + "commit ID": "17db2298e25bb439873e3746ddab6aad05b9014f" }, "repo_70": { - "url": "https://github.com/jonas-ellert/linear-time-runs", - "pitfalls": {}, - "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "url": "https://github.com/sthanhe/ParticleDispersion", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" } }, - "commit ID": "065dfae01cccc8fa7fa8b116cfa91f272c0b22ba" + "commit ID": "9eafc76b75a52846b9bf78aa8a2fd0c24c5f2b9d" }, "repo_71": { - "url": "https://github.com/Miagarciaru/atlas-outreach-data-tools-for-lumi36", + "url": "https://github.com/tesselle/kairos", "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P009": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "coderepository points to their homepage" + }, "P016": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", "description": "codeRepository does not point to the same repository" } }, "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { + "W006": { "source_file": "codemeta.json", - "description": "dateModified is outdated" + "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" }, - "W004": { + "W009": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "developmentStatus is a URL instead of a string" } }, - "commit ID": "fc28e29316a373b917db9e88c778fb52697476cc" + "commit ID": "113e0be3cc9beb2895f0ff5ac95063aad219b536" }, "repo_72": { - "url": "https://github.com/peterpolidoro/kicad_bom", + "url": "https://github.com/tvwenger/bayes_spec", "pitfalls": { - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" + "P001": { + "source_file": "codemeta.json", + "description": "Version does not correspond to the version used in the latest release" } }, "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "requirements.txt", + "description": "SoftwareRequirements don’t have versions" }, "W002": { "source_file": "codemeta.json", "description": "dateModified is outdated" }, - "W004": { + "W007": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "Identifier is empty" } }, - "commit ID": "9868eeec378a9a3723c963c66a4a5e77023903aa" + "commit ID": "2dc53e3fc9302b8a40fcaec6384ee152c700590a" }, "repo_73": { - "url": "https://github.com/FIPE18-007-VERMEULEN/csdvp-evolutionary-algorithm-optimization", + "url": "https://github.com/umr-amap/StormR", "pitfalls": { - "P011": { + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" + }, + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" + }, + "P017": { "source_file": "codemeta.json", - "description": "IssueTracker violates the expected URL format" + "description": "version does not match the package’s" }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" + "P018": { + "source_file": "codemeta.json", + "description": "Identifier uses raw SWHIDs without their resolvable URL" } }, "warnings": { "W001": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "description": "SoftwareRequirements don’t have versions" }, "W002": { "source_file": "codemeta.json", @@ -1393,680 +1367,1577 @@ "description": "programmingLanguages do not have versions" } }, - "commit ID": "19cc44fd5204dcc32fdff9e1a2213e5aa74db5b2" + "commit ID": "0f179f94caac8ee075473472cb0474f54e745947" }, "repo_74": { - "url": "https://github.com/Nowosad/rcartocolor", + "url": "https://github.com/underworldcode/underworld2", "pitfalls": { - "P010": { - "source_file": "LICENSE", - "description": "The file does not have any specific license except for copyright" + "P001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "Version does not correspond to the version used in the latest release" }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" + "P006": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "License pointing to a local file instead of stating the name. For example: “license”: LICENSE.MD" }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" + "P013": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "License does not have the specific version" + }, + "P016": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "codeRepository does not point to the same repository" } }, "warnings": { "W001": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "description": "SoftwareRequirements don’t have versions" }, - "W004": { + "W002": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "dateModified is outdated" } }, - "commit ID": "39298c7dd95fc9d661ec88fd8fe38f1eaefe0322" + "commit ID": "a017a16c73c7c8bbb2869ceb05080c5c5098ac8e" }, "repo_75": { - "url": "https://github.com/DanielSc4/inseq", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "url": "https://github.com/viznuv/transforEmotion", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "Copyright section taken as template without modification" } }, - "commit ID": "5a217b0410ba73d0e6b2df712d04569497a3be97" + "commit ID": "f40dbf651f4361c2cd2dca4092e6e90b9bf4a073" }, "repo_76": { - "url": "https://github.com/aravind-j/EvaluateCore", + "url": "https://github.com/yt-project/unyt", "pitfalls": { "P001": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", "description": "Version does not correspond to the version used in the latest release" }, - "P003": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "There are more than two authors but only one field for them (\"author\": \"Thomas Boch and Matthieu Baumann\") instead of a list" - }, - "P009": { + "P013": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "coderepository points to their homepage" + "description": "License does not have the specific version" }, "P017": { "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" + "description": "version does not match the package’s" } }, "warnings": { - "W004": { + "W001": { + "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", + "description": "SoftwareRequirements don’t have versions" + }, + "W002": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "dateModified is outdated" }, - "W008": { + "W007": { "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "GivenName in author field, has more than one name" + "description": "Identifier is empty" } }, - "commit ID": "83f380c102022ddfd0fb275c821b9f16e2ec4cd4" + "commit ID": "969fc6a629d332568832b849c6cb058d405ad442" }, "repo_77": { - "url": "https://github.com/matthiasprobst/pivmetalib", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W004": { + "url": "https://github.com/A-Klingenberg/VIPER", + "pitfalls": { + "P014": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.1089/cmb.2024.0866'" } }, - "commit ID": "a8d2fafb200cb3663f77c21bf768b94c87a2618c" + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-03-27T00:00:00' is outdated compared to repository date '2025-05-15T15:50:26'" + } + }, + "commit ID": "" }, "repo_78": { - "url": "https://github.com/craddm/eegUtils", + "url": "https://github.com/AI4LAM/awesome-ai4lam", "pitfalls": { - "P010": { - "source_file": "LICENSE", - "description": "The file does not have any specific license except for copyright" - }, - "P015": { - "source_file": "codemeta.json", - "description": "contIntegration link returns 404" - }, - "P017": { - "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/AI4LAM/awesome-ai4lam, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/mhucka/awesome-ai4lam" } }, "warnings": { - "W004": { - "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" - }, - "W006": { - "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" - }, - "W009": { - "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" + "W003": { + "source_file": "README.md", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/AI4LAM/awesome-ai4lam/main/README.md" } }, - "commit ID": "2b2dbe123b1fabaac414aa0f62b8259194d40e5f" + "commit ID": "" }, "repo_79": { - "url": "https://github.com/arviz-devs/preliz", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, - "warnings": {}, - "commit ID": "2fbd0c585d81faadbc5b9818c151323a89d890b4" - }, - "repo_80": { - "url": "https://github.com/JSadowska/testLille", + "url": "https://github.com/AgrDataSci/gosset", "pitfalls": { - "P002": { + "P009": { + "source_file": "codemeta.json", + "description": "P009 detected: codemeta.json codeRepository points to homepage instead of repository: https://agrdatasci.github.io/gosset/" + }, + "P010": { "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" }, "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/AgrDataSci/gosset, and the ones found in codemeta.json are mismatched: codemeta.json: https://agrdatasci.github.io/gosset/" } }, "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: methods, BradleyTerry2, DescTools, ggplot2, ggparty, ggrepel, lifecycle, partykit, PlackettLuce, psychotools, qvcalc, stats, tidyr, utils, patchwork, parallel" + }, "W004": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'gosset'" } }, - "commit ID": "a944981f43c1bd37710b8a41442754bdc95e339b" + "commit ID": "" }, - "repo_81": { - "url": "https://github.com/riatelab/tanaka", + "repo_80": { + "url": "https://github.com/CSCfi/PID-MS-API", "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and pom.xml version '1.1.' does not match pom.xml version '1.1.7'" } }, "warnings": { + "W001": { + "source_file": "pom.xml", + "description": "W001 detected: pom.xml contains software requirements without versions: quarkus-hibernate-orm-rest-data-panache, quarkus-jdbc-mariadb, quarkus-config-yaml, quarkus-resteasy-jackson, quarkus-agroal, quarkus-smallrye-health, quarkus-micrometer-registry-prometheus, quarkus-arc, quarkus-junit5, rest-assured, quarkus-smallrye-openapi" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2023-05-24T00:00:00' is outdated compared to repository date '2025-04-22T10:09:05'" + }, "W004": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "W004 detected: codemeta.json Programming languages without versions: Java" } }, - "commit ID": "fd2efc3d9b417612c81c318f0223a40f5f4e6518" + "commit ID": "" }, - "repo_82": { - "url": "https://github.com/underworldcode/underworld2", + "repo_81": { + "url": "https://github.com/Duke-GCB/calrissian", "pitfalls": { "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" - }, - "P006": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "License pointing to a local file instead of stating the name. For example: \u201clicense\u201d: LICENSE.MD" - }, - "P013": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "License does not have the specific version" - }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.16.0' does not match release version '0.18.1'" } }, "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: hatchling" }, "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2023-10-23T00:00:00' is outdated compared to repository date '2026-06-24T14:23:37'" + }, + "W004": { "source_file": "codemeta.json", - "description": "dateModified is outdated" + "description": "W004 detected: codemeta.json Programming languages without versions: Python" } }, - "commit ID": "a017a16c73c7c8bbb2869ceb05080c5c5098ac8e" + "commit ID": "" }, - "repo_83": { - "url": "https://github.com/caltechlibrary/admin-shell-scripts", - "pitfalls": {}, - "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "repo_82": { + "url": "https://github.com/FC4E-CAT/fc4e-cat-ui", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.3.1' does not match release version '3.2.0'" }, - "W002": { + "P017": { "source_file": "codemeta.json", - "description": "dateModified is outdated" + "description": "P017 detected: codemeta.json and package.json version '1.3.1' does not match package.json version '3.2.0'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-09-11T00:00:00' is outdated compared to repository date '2025-09-23T11:10:28'" }, "W004": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "W004 detected: codemeta.json Programming languages without versions: Typescript" } }, - "commit ID": "ba5753c86812f4230e2c68dcecaf825c22aeefd4" + "commit ID": "" + }, + "repo_83": { + "url": "https://github.com/INM-6/beaverdam", + "pitfalls": {}, + "warnings": {}, + "commit ID": "" }, "repo_84": { - "url": "https://github.com/jvegreg/ESMValCore", + "url": "https://github.com/IPBES-Data/IPBES.R", "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: DESCRIPTION version '0.4.2' and codemeta.json version '0.2.8' does not match release version '0.4.0'" }, - "P009": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "coderepository points to their homepage" + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/IPBES-Data/IPBES.R, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/rkrug/IPBES.R" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.2.8' does not match DESCRIPTION version '0.4.2'" } }, "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: openalexR, dplyr, writexl, tidygraph, ggplot2, ggraph, networkD3, httr2, tibble, tidyterra, terra, countrycode, geodata, DT" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" } }, - "commit ID": "03eb1c942bf1dc3be98cb30c3592b42e82a94f16" + "commit ID": "" }, "repo_85": { - "url": "https://github.com/sthanhe/ParticleDispersion", + "url": "https://github.com/JeffreyRStevens/cocoon", "pitfalls": { "P002": { "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" } }, - "commit ID": "9eafc76b75a52846b9bf78aa8a2fd0c24c5f2b9d" + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: cli, dplyr, lifecycle" + }, + "W003": { + "source_file": "metadata files", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/JeffreyRStevens/cocoon/main/LICENSE.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + }, + "commit ID": "" }, "repo_86": { - "url": "https://github.com/Neplex/COveR", + "url": "https://github.com/JeremyGelb/geocmeans", "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P013": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "License does not have the specific version" + "P001": { + "source_file": "DESCRIPTION", + "description": "P001 detected: DESCRIPTION version '0.3.4.1.9000' does not match release version '0.3.4'" } }, - "warnings": { - "W002": { + "warnings": {}, + "commit ID": "" + }, + "repo_87": { + "url": "https://github.com/LEEF-UZH/LEEF.archive.default", + "pitfalls": { + "P001": { "source_file": "codemeta.json", - "description": "dateModified is outdated" + "description": "P001 detected: codemeta.json version '1.0.0' and DESCRIPTION version '1.0.0' does not match release version '1.1.0'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: openssl, yaml" }, "W004": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "W004 detected: codemeta.json Programming languages without versions: R" } }, - "commit ID": "35423ec7f840c68070b73a9910350c1ac93e4a53" + "commit ID": "" }, - "repo_87": { - "url": "https://github.com/AI5GW/Goertzel", + "repo_88": { + "url": "https://github.com/LEEF-UZH/LEEF.measurement.flowcam", "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.0.0' and DESCRIPTION version '1.0.0' does not match release version '1.1.0'" } }, - "commit ID": "2eb355240d0a66147309c783c91877af350414a9" - }, - "repo_88": { - "url": "https://github.com/mdstephenserdc/network_representativeness", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: data.table, yaml, utils, plyr, dplyr, purrr, magrittr, e1071, tidyselect, stats, loggit, randomForest" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" } }, - "commit ID": "a0f9fc12d1bf44811423b1fc212c0b6d398b677c" + "commit ID": "" }, "repo_89": { - "url": "https://github.com/matthiasprobst/h5RDMtoolbox", + "url": "https://github.com/LanguageMachines/dimbl", + "pitfalls": {}, + "warnings": {}, + "commit ID": "" + }, + "repo_90": { + "url": "https://github.com/LanguageMachines/mbt", "pitfalls": {}, "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: libxml2, ticcutils, timbl" }, "W004": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "W004 detected: codemeta.json Programming languages without versions: C++" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'mbt'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" } }, - "commit ID": "eaf66f66d23fcc6b7b1728f2fe7ac6d65c9d9d85" + "commit ID": "" }, - "repo_90": { - "url": "https://github.com/m-team-kit/cookiecutter-web", - "pitfalls": { - "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" + "repo_91": { + "url": "https://github.com/LanguageMachines/timbl", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: libxml2, ticcutils" }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: C++" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'timbl'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" } }, + "commit ID": "" + }, + "repo_92": { + "url": "https://github.com/MITDDC/plnr-1971-1982", + "pitfalls": {}, "warnings": { "W004": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "W004 detected: codemeta.json Programming languages without versions: Micro-Planner" } }, - "commit ID": "728cf1ae38ce76aaaa31fd52bb46006144a2e5fa" + "commit ID": "" }, - "repo_91": { - "url": "https://github.com/ParaStation/psmpi", + "repo_93": { + "url": "https://github.com/OneFineStarstuff/OneFineStarstuff.github.io", "pitfalls": { - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" - }, "P017": { "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" + "description": "P017 detected: codemeta.json, Dockerfile and package.json version '1.2.0' does not match metadata files version '1.0.0', package.json version '1.0.0', metadata files version '1.0.0'" } }, "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: fastapi, uvicorn, torch, transformers, Pillow, whisper, ultralytics, pyttsx3, loguru, nest_asyncio, setuptools, wheel" }, "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-12-18T00:00:00' is outdated compared to repository date '2026-06-23T06:29:43'" + } + }, + "commit ID": "" + }, + "repo_94": { + "url": "https://github.com/R-Lum/xlum", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: utils, methods" }, "W004": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'xlum'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#Concept" } }, - "commit ID": "375f8ee387a70bb5e80b774c0ec8472f2ca7d840" + "commit ID": "" }, - "repo_92": { - "url": "https://github.com/LanguageMachines/frog", + "repo_95": { + "url": "https://github.com/R3BRootGroup/frs", "pitfalls": { "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version 'dec25' does not match release version 'jun26'" } }, "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: FairRoot, FairSoft, R3BRoot" }, "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2025-12-22T00:00:00' is outdated compared to repository date '2026-06-03T15:22:25'" }, "W004": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "W004 detected: codemeta.json Programming languages without versions: C, C++" }, - "W006": { + "W005": { "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + "description": "W005 detected: codemeta.json Multiple requirements written as single string: 'FairRoot, FairSoft, R3BRoot'" } }, - "commit ID": "53da3bfd9958af5e7221348607f6db358edef486" + "commit ID": "" }, - "repo_93": { - "url": "https://github.com/LDEO-CREW/Pythonic-DISORT", + "repo_96": { + "url": "https://github.com/adamhsparks/ChickpeaAscoDispersal", "pitfalls": {}, "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: graphics, mgcViz" + }, + "W003": { + "source_file": "README.md", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/adamhsparks/ChickpeaAscoDispersal/master/README.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'ChickpeaAscoDispersal'" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.tidyverse.org/lifecycle/#stable" } }, - "commit ID": "eb92fb81d422e76c1501d196bf14db6756430d03" + "commit ID": "" }, - "repo_94": { - "url": "https://github.com/barbagroup/PetIBM", + "repo_97": { + "url": "https://github.com/adeverse/adephylo", "pitfalls": { "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.1.17' does not match release version '1.1-17'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '1.1.17' does not match DESCRIPTION version '1.1-17'" } }, "warnings": { - "W002": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: methods, phylobase, ape, adegenet" + }, + "W004": { "source_file": "codemeta.json", - "description": "dateModified is outdated" + "description": "W004 detected: codemeta.json Programming languages without versions: R" }, - "W007": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Identifier is empty" + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://www.repostatus.org/#active" } }, - "commit ID": "be91f218702ada7fe569fe77c258fa748f075713" + "commit ID": "" }, - "repo_95": { - "url": "https://github.com/DrMattG/SDGsR", + "repo_98": { + "url": "https://github.com/adrijmz/os_group_project", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.11200165'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-04-20T00:00:00' is outdated compared to repository date '2024-05-21T19:16:01'" + } + }, + "commit ID": "" + }, + "repo_99": { + "url": "https://github.com/amasson84/costcalc", "pitfalls": { "P002": { "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: CODEMETA.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.1469035'" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/amasson84/costcalc, and the ones found in codemeta.json are mismatched: CODEMETA.json: https://github.com/epfllibrary/costcalc" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and package.json version '2.4' does not match package.json version '1.0.0'" + } + }, + "warnings": {}, + "commit ID": "" + }, + "repo_100": { + "url": "https://github.com/aravind-j/EvaluateCore", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.1.5', codemeta.json version '0.1.5' and DESCRIPTION version '0.1.5.900' does not match release version 'CRAN_0.1.5'" }, "P009": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "coderepository points to their homepage" + "source_file": "DESCRIPTION", + "description": "P009 detected: DESCRIPTION codeRepository points to homepage instead of repository: https://github.com/aravind-j/EvaluateCore\n https://CRAN.R-project.org/package=EvaluateCore\n https://aravind-j.github.io/EvaluateCore/\n https://doi.org/10.5281/zenodo.3875930" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.1.5' does not match DESCRIPTION version '0.1.5.900'" } }, - "commit ID": "fa1898e88b9a31a05c2b722f36d6993595536a12" + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: agricolae, boot, car, cluster, dplyr, entropy, ggcorrplot, ggplot2, ggtext, grDevices, gridExtra, kSamples, mathjaxr, missMDA, psych, reshape2, Rdpack, stats, tibble, vegan" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + }, + "commit ID": "" + }, + "repo_101": { + "url": "https://github.com/aravind-j/rpcss", + "pitfalls": { + "P009": { + "source_file": "DESCRIPTION", + "description": "P009 detected: DESCRIPTION codeRepository points to homepage instead of repository: https://github.com/aravind-j/rpcss\n https://cran.r-project.org/package=rpcss\n https://aravind-j.github.io/rpcss/\n https://doi.org/10.5281/zenodo.14889174" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json, DESCRIPTION and CITATION.cff version '0.1.1' does not match DESCRIPTION version '0.1.1.9000', metadata files version '0.1.1.9000'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: dplyr, FactoMineR, ggplot2, ggrepel, gslnls, mathjaxr, methods, Rdpack, stats, tidyr, utils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + }, + "commit ID": "" + }, + "repo_102": { + "url": "https://github.com/atsyplenkov/rp5pik", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.0.2' does not match release version '0.0.2.2'" + }, + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.0.2' does not match DESCRIPTION version '0.0.2.2'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: cli, dplyr, lifecycle, lubridate, purrr, rvest, stringr, terra, tibble, tidyr" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://lifecycle.r-lib.org/articles/stages.html#experimental" + } + }, + "commit ID": "" + }, + "repo_103": { + "url": "https://github.com/bihealth/vcfpy", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.7.0' and pyproject.toml version '0.14.2' does not match release version '0.14.1'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and pyproject.toml version 'v0.7.0' does not match pyproject.toml version '0.14.2'" + } + }, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: hatchling" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2016-09-28T00:00:00' is outdated compared to repository date '2026-04-25T08:19:41'" + } + }, + "commit ID": "" + }, + "repo_104": { + "url": "https://github.com/biogo/biogo", + "pitfalls": { + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'BSD-3 like'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2017-01-05T00:00:00' is outdated compared to repository date '2026-06-12T09:49:10'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + }, + "commit ID": "" + }, + "repo_105": { + "url": "https://github.com/boydorr/TraitExtraction.jl", + "pitfalls": { + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and Project.toml version 'v0.1.0' does not match Project.toml version '0.1.0'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: julia" + } + }, + "commit ID": "" + }, + "repo_106": { + "url": "https://github.com/caltechlibrary/irdm_harvester", + "pitfalls": { + "P008": { + "source_file": "requirements.txt", + "description": "P008 detected: requirements.txt Software requirements contain invalid URLs: https://github.com/caltechlibrary/dimcli@cris-auth" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: dimcli @ git+https://github.com/caltechlibrary/dimcli@cris-auth" + } + }, + "commit ID": "" + }, + "repo_107": { + "url": "https://github.com/cetoolbox/cetoolbox", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.6.0' does not match release version '1.6.1'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Java" + } + }, + "commit ID": "" + }, + "repo_108": { + "url": "https://github.com/daliwang/kmELM", + "pitfalls": {}, + "warnings": {}, + "commit ID": "" + }, + "repo_109": { + "url": "https://github.com/destination-earth/DestinE_ESA_GFTS", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: https://github.com/destination-earth/DestinE_ESA_GFTS/blob/main/.binder/environment.yml, chartpress, click, conda-lock" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: Programming languages in metadata do not have version specifications" + } + }, + "commit ID": "" + }, + "repo_110": { + "url": "https://github.com/donomii/quon-jupyter", + "pitfalls": { + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'GPL v3.0'" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/donomii/quon-jupyter, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/gopherdata/gophernotes" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2017-12-13T00:00:00' is outdated compared to repository date '2020-12-22T00:42:25'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + }, + "commit ID": "" + }, + "repo_111": { + "url": "https://github.com/dutta-alankar/AstroPlasma", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: hatchling" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: C++" + } + }, + "commit ID": "" + }, + "repo_112": { + "url": "https://github.com/elipousson/bingmapr", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: httr2, magick, sf, utils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + }, + "commit ID": "" + }, + "repo_113": { + "url": "https://github.com/elipousson/sharepointr", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.1.0' does not match DESCRIPTION version '0.1.0.9000'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: AzureGraph, cli, glue, httr, httr2, lifecycle, Microsoft365R, rlang, stringr, utils, vctrs" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W009": { + "source_file": "codemeta.json", + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://lifecycle.r-lib.org/articles/stages.html#experimental" + } + }, + "commit ID": "" + }, + "repo_114": { + "url": "https://github.com/epfllibrary/costcalc", + "pitfalls": { + "P001": { + "source_file": "package.json", + "description": "P001 detected: package.json version '1.0.0' does not match release version '2.4'" + }, + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: CODEMETA.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.1469035'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and package.json version '2.4' does not match package.json version '1.0.0'" + } + }, + "warnings": {}, + "commit ID": "" + }, + "repo_115": { + "url": "https://github.com/explore-platform/s-disco", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: Visualiser" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2023-07-01T00:00:00' is outdated compared to repository date '2024-05-21T13:59:28'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python, Java" + } + }, + "commit ID": "" + }, + "repo_116": { + "url": "https://github.com/fairdataihub/SODA-for-SPARC", + "pitfalls": {}, + "warnings": {}, + "commit ID": "" + }, + "repo_117": { + "url": "https://github.com/fchuffar/gse2study", + "pitfalls": { + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/fchuffar/gse2study, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/fchuffar/ptlmapper" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + }, + "commit ID": "" + }, + "repo_118": { + "url": "https://github.com/fospald/heamd", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'GPL'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2018-10-02T00:00:00' is outdated compared to repository date '2025-04-21T09:24:58'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + }, + "commit ID": "" + }, + "repo_119": { + "url": "https://github.com/gabrielblain/SPIChanges", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: gamlss, gamlss.dist, lubridate, MuMIn, rlang, spsUtil, stats, brglm2, zoo" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + }, + "commit ID": "" + }, + "repo_120": { + "url": "https://github.com/heuermh/sea-eagle", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.10', codemeta.json version '0.10' and pom.xml version '1.0-SNAPSHOT' does not match release version 'sea-eagle-0.10'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and pom.xml version '0.10' does not match pom.xml version '1.0-SNAPSHOT'" + } + }, + "warnings": { + "W001": { + "source_file": "pom.xml", + "description": "W001 detected: pom.xml contains software requirements without versions: tamboui-toolkit, tamboui-jline3-backend, picocli, dsh-compress, duckdb_jdbc, slf4j-api, slf4j-simple, athena, guava" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2026-06-26T00:00:00' is outdated compared to repository date '2026-06-30T01:43:38'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Java" + } + }, + "commit ID": "" + }, + "repo_121": { + "url": "https://github.com/hykelvinlee42/RRLeo-Photometry", + "pitfalls": { + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.8190781'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python" + } + }, + "commit ID": "" + }, + "repo_122": { + "url": "https://github.com/interTwin-eu/dcnios", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.0.0' and package.json version '0.0.0' does not match release version '0.0.1'" + }, + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and package.json version '1.0.0' does not match package.json version '0.0.0'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-02-01T00:00:00' is outdated compared to repository date '2025-12-11T14:27:54'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" + } + }, + "commit ID": "" + }, + "repo_123": { + "url": "https://github.com/janelia-kicad/trinamic-wiring", + "pitfalls": {}, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-07-31T00:00:00' is outdated compared to repository date '2025-05-14T07:09:57'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: KiCad" + } + }, + "commit ID": "" + }, + "repo_124": { + "url": "https://github.com/jimbrig/RPkg", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: DBI, fs, glue, jsonlite, lubridate, plumber, pool, safer, sessioninfo, stringr, tibble, urltools, utils" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + }, + "commit ID": "" + }, + "repo_125": { + "url": "https://github.com/justinbois/bebi103", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.1.28' does not match release version '0.1.26'" + }, + "P013": { + "source_file": "setup.py", + "description": "P013 detected: setup.py License does not specify version: 'BSD'" + } + }, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: contourpy, numpy, numba, xarray, scipy, pandas, polars, tqdm, matplotlib, colorcet, holoviews" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python" + } + }, + "commit ID": "" + }, + "repo_126": { + "url": "https://github.com/karthik/wesanderson", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + }, + "commit ID": "" + }, + "repo_127": { + "url": "https://github.com/leonawicz/rtrek", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: downloader, dplyr, ggplot2, jpeg, jsonlite, memoise, png, purrr, rvest, tibble, tidyr, xml2" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + }, + "commit ID": "" + }, + "repo_128": { + "url": "https://github.com/lifewatch/eva", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.0.1' does not match release version '0.1.0'" + } + }, + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Python, R" + } + }, + "commit ID": "" + }, + "repo_129": { + "url": "https://github.com/lionandjelka/QhX1", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: numpy, pandas, scipy, scikit-learn, scikit-optimize, libwwz, colorednoise, tqdm, panel, hvplot, bokeh, datashader, pyarrow, dask[dataframe], traitlets, wheel" + } + }, + "commit ID": "" + }, + "repo_130": { + "url": "https://github.com/meng630/GMD_E3SM_SCM", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: sphinx, sphinx_rtd_theme, nbsphinx, sphinx-reload" + } + }, + "commit ID": "" + }, + "repo_131": { + "url": "https://github.com/meng630/e3sm_maint-2.0", + "pitfalls": {}, + "warnings": {}, + "commit ID": "" + }, + "repo_132": { + "url": "https://github.com/mikemahoney218/mvdf", + "pitfalls": { + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + } + }, + "warnings": { + "W001": { + "source_file": "codemeta.json", + "description": "W001 detected: codemeta.json contains software requirements without versions: methods, rlang, glue, proceduralnames" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + }, + "commit ID": "" }, - "repo_96": { - "url": "https://github.com/tesselle/kairos", + "repo_133": { + "url": "https://github.com/mlr-org/mcboost", "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - }, - "P009": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "coderepository points to their homepage" + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: DESCRIPTION version '0.4.4.9000' and codemeta.json version '0.4.0' does not match release version '0.4.3'" }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.4.0' does not match DESCRIPTION version '0.4.4.9000'" } }, "warnings": { - "W006": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: backports, rmarkdown, rpart, glmnet" + }, + "W004": { "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'mcboost'" }, "W009": { "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: https://lifecycle.r-lib.org/articles/stages.html#experimental" } }, - "commit ID": "113e0be3cc9beb2895f0ff5ac95063aad219b536" + "commit ID": "" }, - "repo_97": { - "url": "https://github.com/SeUniVr/PLC-RE", + "repo_134": { + "url": "https://github.com/ms609/Quartet", "pitfalls": {}, "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: ape, PlotTools" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'Quartet'" } }, - "commit ID": "a12a44cbc077dbd4c20b5f4764f9d53da5647b86" + "commit ID": "" }, - "repo_98": { - "url": "https://github.com/andrew-saydjari/mfouesneau.github.com", + "repo_135": { + "url": "https://github.com/mscroggs/pyfax", "pitfalls": {}, "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "pyproject.toml", + "description": "W001 detected: pyproject.toml contains software requirements without versions: requests, feedparser, sphinx-autoapi" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-02-06T00:00:00' is outdated compared to repository date '2025-02-13T11:09:23'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" } }, - "commit ID": "17fbd909db0122eeca39d0c313b11742e7fd8164" + "commit ID": "" }, - "repo_99": { - "url": "https://github.com/fran2410/AI-Open-Science", - "pitfalls": { - "P002": { - "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" - } - }, + "repo_136": { + "url": "https://github.com/nkrofta/Topological-Groups", + "pitfalls": {}, "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" - }, - "W002": { - "source_file": "codemeta.json", - "description": "dateModified is outdated" - }, "W004": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "W004 detected: codemeta.json Programming languages without versions: Isabelle" } }, - "commit ID": "592afb0b0f8a64cb57b66ed4f79d2bca9f448fbc" + "commit ID": "" }, - "repo_100": { - "url": "https://github.com/umr-amap/StormR", + "repo_137": { + "url": "https://github.com/rOpenGov/r311", "pitfalls": { "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.4.3' does not match release version '0.4.4'" }, - "P002": { + "P010": { "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" }, "P017": { "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.4.3' does not match DESCRIPTION version '0.4.4'" + } + }, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: curl, jsonlite, tools, utils" }, - "P018": { + "W004": { "source_file": "codemeta.json", - "description": "Identifier uses raw SWHIDs without their resolvable URL" + "description": "W004 detected: codemeta.json Programming languages without versions: R" } }, + "commit ID": "" + }, + "repo_138": { + "url": "https://github.com/riatelab/cartography", + "pitfalls": {}, "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: classInt, curl, graphics, methods, png, raster, Rcpp, sf, sp, stats, utils, grDevices" }, - "W002": { + "W004": { "source_file": "codemeta.json", - "description": "dateModified is outdated" + "description": "W004 detected: codemeta.json Programming languages without versions: R" + }, + "W006": { + "source_file": "metadata files", + "description": "W006 detected: codemeta.json Identifier is a name instead of valid unique identifier: 'cartography'" + } + }, + "commit ID": "" + }, + "repo_139": { + "url": "https://github.com/riatelab/flows", + "pitfalls": {}, + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: igraph, graphics, mapsf, utils, stats" }, "W004": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "W004 detected: codemeta.json Programming languages without versions: R" } }, - "commit ID": "0f179f94caac8ee075473472cb0474f54e745947" + "commit ID": "" }, - "repo_101": { - "url": "https://github.com/viznuv/transforEmotion", + "repo_140": { + "url": "https://github.com/ropensci/ReLTER", "pitfalls": { "P002": { "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" } }, - "commit ID": "f40dbf651f4361c2cd2dca4092e6e90b9bf4a073" + "warnings": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: dplyr, dtplyr, ggforce, ggspatial, geojsonsf, ggplot2, httr2, jqr, jsonlite, lifecycle, lubridate, magrittr, purrr, qrcode, utils, units, tibble, stringr, terra" + }, + "W003": { + "source_file": "metadata files", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/ropensci/ReLTER/main/LICENSE.md" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + }, + "commit ID": "" }, - "repo_102": { - "url": "https://github.com/rOpenGov/r311", + "repo_141": { + "url": "https://github.com/ropensci/sofa", "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.4.0' does not match release version '0.4.1'" + }, + "P010": { + "source_file": "LICENSE", + "description": "P010 detected: LICENSE file only contains copyright information without actual license terms" + }, "P017": { "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" + "description": "P017 detected: codemeta.json and DESCRIPTION version '0.4.0' does not match DESCRIPTION version '0.4.1'" } }, - "commit ID": "1273245299f477b47754319cf0e22b8cdf4995a8" - }, - "repo_103": { - "url": "https://github.com/R3BRootGroup/sofia", "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: mime" }, - "W002": { + "W009": { "source_file": "codemeta.json", - "description": "dateModified is outdated" + "description": "W009 detected: codemeta.json developmentStatus is a URL instead of status string: http://www.repostatus.org/#active" + } + }, + "commit ID": "" + }, + "repo_142": { + "url": "https://github.com/rreinecke/global-gradient-based-groundwater-model", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.0.0' does not match release version '1.1'" }, - "W004": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P009": { "source_file": "codemeta.json", - "description": "programmingLanguages do not have versions" + "description": "P009 detected: codemeta.json codeRepository points to homepage instead of repository: http://globalgroundwatermodel.org/" }, - "W005": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "softwareRequirements have more than one req, but it\u2019s written as one string" + "P013": { + "source_file": "codemeta.json", + "description": "P013 detected: codemeta.json License does not specify version: 'GPL v3.0'" + }, + "P016": { + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/rreinecke/global-gradient-based-groundwater-model, and the ones found in codemeta.json are mismatched: codemeta.json: http://globalgroundwatermodel.org/" } }, - "commit ID": "ce7e8f0296333ca952d5f5554c068cc44a500380" - }, - "repo_104": { - "url": "https://github.com/sorokinvld/LLFn", - "pitfalls": {}, "warnings": { - "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2018-01-02T00:00:00' is outdated compared to repository date '2026-03-11T10:32:43'" + }, + "W007": { + "source_file": "codemeta.json", + "description": "W007 detected: codemeta.json identifier field is empty or missing" } }, - "commit ID": "a8ec8da19a3cc5d8207d362add83181bffa18c4e" + "commit ID": "" }, - "repo_105": { - "url": "https://github.com/DeepRank/Deeprank-GNN", + "repo_143": { + "url": "https://github.com/rsdoiel/gameset", "pitfalls": { "P002": { "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" } }, - "warnings": {}, - "commit ID": "544ee2b98a1d784047c25f4014f09a1effcdbcec" + "warnings": { + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: Go" + } + }, + "commit ID": "" }, - "repo_106": { - "url": "https://github.com/r-spatialecology/landscapemetrics", + "repo_144": { + "url": "https://github.com/slugb0t/FlaskBlog", "pitfalls": { "P001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "Version does not correspond to the version used in the latest release" + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '0.1.2' and codemeta.json version '0.1.2' does not match release version '111.973987.123'" }, - "P009": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "coderepository points to their homepage" + "P014": { + "source_file": "codemeta.json", + "description": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.13942931'" + } + }, + "warnings": {}, + "commit ID": "" + }, + "repo_145": { + "url": "https://github.com/usa-npn/rnpn", + "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: codemeta.json version '1.4.0', codemeta.json version '1.4.0' and DESCRIPTION version '1.4.1.9000' does not match release version '1.4.1'" }, - "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" + "P017": { + "source_file": "codemeta.json", + "description": "P017 detected: codemeta.json and DESCRIPTION version '1.4.0' does not match DESCRIPTION version '1.4.1.9000'" } }, "warnings": { - "W006": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: dplyr, jsonlite, lifecycle, magrittr, readr, rlang, tibble, tidyr, xml2" + }, + "W004": { "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + "description": "W004 detected: codemeta.json Programming languages without versions: R" } }, - "commit ID": "9e777a5c5ec568ebca8f5ddec7bed1c2d465a357" + "commit ID": "" }, - "repo_107": { - "url": "https://github.com/aloftdata/getRad", + "repo_146": { + "url": "https://github.com/vrineau/Agatta", "pitfalls": { - "P017": { + "P001": { "source_file": "codemeta.json", - "description": "version does not match the package\u2019s" + "description": "P001 detected: codemeta.json version '0.8.1' does not match release version '1.0.2'" + }, + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" } }, "warnings": { - "W009": { + "W001": { "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" + "description": "W001 detected: codemeta.json contains software requirements without versions: https://github.com/vrineau/Agatta/blob/main/requirements.txt" + }, + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-03-08T00:00:00' is outdated compared to repository date '2026-02-27T10:33:21'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: Programming languages in metadata do not have version specifications" } }, - "commit ID": "f4bc21602adecdae6dfd123e8d439933de426f7b" + "commit ID": "" }, - "repo_110": { - "url": "https://github.com/R-Lum/Luminescence", + "repo_147": { + "url": "https://github.com/willgryan/PAVER", "pitfalls": { + "P001": { + "source_file": "codemeta.json", + "description": "P001 detected: DESCRIPTION version '0.0.0.9000' and codemeta.json version '0.0.0.9000' does not match release version 'pre-release'" + }, "P002": { "source_file": "LICENSE", - "description": "Copyright section taken as template without modification" + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" }, "P016": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "codeRepository does not point to the same repository" + "source_file": "", + "description": "P016 detected: the correct URL is https://github.com/willgryan/PAVER, and the ones found in codemeta.json are mismatched: codemeta.json: https://github.com/AliSajid/PAVER" } }, "warnings": { - "W006": { + "W001": { + "source_file": "DESCRIPTION", + "description": "W001 detected: DESCRIPTION contains software requirements without versions: circlize, ComplexHeatmap, dplyr, dynamicTreeCut, forcats, ggplot2, ggplotify, ggprism, ggpubr, ggrepel, grid, magrittr, purrr, randomcoloR, rlang, smacof, stringr, tibble, tidyr, umap" + }, + "W003": { + "source_file": "metadata files", + "description": "W003 detected: Repository has multiple licenses but metadata files only lists one. Found in: https://raw.githubusercontent.com/willgryan/PAVER/main/LICENSE.md" + }, + "W004": { "source_file": "codemeta.json", - "description": "Identifier is a name instead of a valid unique identifier, but an identifier exist (e.g., in a badge)" + "description": "W004 detected: codemeta.json Programming languages without versions: R" + } + }, + "commit ID": "" + }, + "repo_148": { + "url": "https://github.com/ybarborini/jdev-t5A02", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" }, - "W009": { + "P017": { "source_file": "codemeta.json", - "description": "developmentStatus is a URL instead of a string" + "description": "P017 detected: codemeta.json and bower.json version '1.0.0' does not match bower.json version '0.0.1'" + } + }, + "warnings": { + "W002": { + "source_file": "metadata files", + "description": "W002 detected: metadata files dateModified '2024-10-10T00:00:00' is outdated compared to repository date '2024-11-22T13:47:13'" + }, + "W004": { + "source_file": "codemeta.json", + "description": "W004 detected: codemeta.json Programming languages without versions: PHP, JS" } }, - "commit ID": "3aca65758cd130df06afb274c6a419033ecdadd0" + "commit ID": "" }, - "repo_111": { - "url": "https://github.com/naaci/watermarking", + "repo_149": { + "url": "https://github.com/ypwong22/ELM_SPRUCE", + "pitfalls": {}, "warnings": { "W001": { - "source_file": "Metadata files (codemeta.json, setup.py, pom.xml etc...)", - "description": "SoftwareRequirements don\u2019t have versions" + "source_file": "requirements.txt", + "description": "W001 detected: requirements.txt contains software requirements without versions: numpy, xarray, zarr, netCDF4, cftime" } }, - "commit ID": "48211f102defdb16d0cd3cf6fc281518a4a96442" + "commit ID": "" + }, + "repo_150": { + "url": "https://github.com/zbmed-semtec/doc2vec-doc-relevance", + "pitfalls": { + "P002": { + "source_file": "LICENSE", + "description": "P002 detected: LICENSE file contains unreplaced template placeholders" + }, + "P018": { + "source_file": "codemeta.json", + "description": "P018 detected: codemeta.json Identifier uses raw SWHID without resolvable URL: 'swh:1:dir:5939540bdda33571b0969e520360b80d98b2bf2b'" + } + }, + "warnings": {}, + "commit ID": "" } } \ No newline at end of file