From 1d877cb83b56f32e08c5440e2fdfd7d46262d9aa Mon Sep 17 00:00:00 2001 From: Damian Martinez Date: Tue, 16 Jun 2026 11:15:24 +0100 Subject: [PATCH 1/2] Change epitope sequence to match new triskelion models --- examples/article_figures/fig4_ccs.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/examples/article_figures/fig4_ccs.py b/examples/article_figures/fig4_ccs.py index 2b8879a..c1ea728 100644 --- a/examples/article_figures/fig4_ccs.py +++ b/examples/article_figures/fig4_ccs.py @@ -139,7 +139,7 @@ def download_cif_file( probe_template = "Antibody", probe_name="custom", probe_target_type = "Sequence", - probe_target_value = "NNRIA", + probe_target_value = "ATETQ", probe_distante_to_epitope = 0, probe_DoL=4, ) From 09f91e3610de14cca8948016c3e87d279b013400 Mon Sep 17 00:00:00 2001 From: Damian Martinez Date: Tue, 16 Jun 2026 16:35:59 +0100 Subject: [PATCH 2/2] Update URL for version 2 of CCS models --- examples/article_figures/fig4_ccs.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/examples/article_figures/fig4_ccs.py b/examples/article_figures/fig4_ccs.py index c1ea728..d60bc5c 100644 --- a/examples/article_figures/fig4_ccs.py +++ b/examples/article_figures/fig4_ccs.py @@ -129,8 +129,8 @@ def download_cif_file( ########################## random_seed = 24 -dome_url = "https://zenodo.org/records/20377070/files/Dome_model.cif" -flat_url = "https://zenodo.org/records/20377070/files/Flat_lattice_model.cif" +dome_url = "https://zenodo.org/records/20719843/files/Dome_model_v2.0.cif" +flat_url = "https://zenodo.org/records/20719843/files/Flat_lattice_model_v2.0.cif" # Download the CIF files dome_model = download_cif_file(dome_url)